cluster # 3525

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Anopheles gambiae
cluster # 3525 cluster # 3525 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3525#0 length = 824 sequences # 2

consensus_3525#1 length = 654 sequences # 1

consensusID : consensus_3525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 824
fasta sequence

                              [CCGCCCACGCGTCCGGCGAAAAAAATAAAGATTGGTCAGCGAATAGCTCTGCCCCCTGCGTATGGCATTGTGAAATATTTAGCGATGTTTGCCTCATCACACTACCATCTCAGTAGTGCCCGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAAGGCTGCATTCCCCTTGTAAACACTACGCCCAGAACCATCCCGTCCCGCAAATCATTCTCCACACGGCGCACACACACACACACACTCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAGCAGGGCTCGAGGGAAGTAGTCGCAATTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTTCGTTTCCGTTTCCTTCCGTCGTCGCACTAGTCGTCGTTTGCTGCCGATCGA---GCGAAGGAAAAGCACCGCGACCGCTGGCGACGACGGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAAAAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGACTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACCATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAAGTGAAGGATCTTATCTTTTACCTGCAGTCGAAGCACATTTCCACGTCCGGTTGCGTCGAAAAAGACGACCTGATAAATCTGGTGATTGCTCATGTAAACTCTGGCGGCAGCTCGCCCCGCACGCCCGGCAGCTTCAGTGCCACCTCGTCCAACACGGAGTCGGCATCCGGTGGCTCATCCCGGTACGGCAGCTTCTATCGG]

[+] EMBL BM614848             [CCGCCCACGCGTCCGGCGAAAAAAATAAAGATTGGTCAGCGAATAGCTCTGCCCCCTGCGTATGGCATTGTGAAATATTTAGCGATGTTTGCCTCATCACACTACCATCTCAGTAGTGCCCGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAAGGCTGCATTCCCCTTGTAAACACTACGCCCAGAACCATCCCGTCCCGCAAATCATTCTCCACACGGCGCACACACACACACACACTCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAGCAGGGCTCGAGGGAAGTAGTCGCAATTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTTCGTTTCCGTTTCCTTCCGTCGTCGCACTAGTCGTCGTTTGCTGCCGATCGA   GCGAAGGAAAAGCACCGCGACCGCTGGCGACGACGGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAAAAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGACTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACCATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAAGTGAAGGATCTTATCTTTTACCTGCAGTCGAAG                                                                                                                                                                        ]
[+] EMBL BM652954             [                                                                                                                                                                                                                                                        ccgGTGGTGCCAGCAAGTGTGTGGCAGCAGGGCTCGAGGGAAGTAGTCGCAATCTCTCCAGCTCGTCCGTGCGTCAATGGTTGCGTTCGTTTCCGTTTCGTTCCGTCGCCGCACTAGCCGTCGTTTGCTGCCGATCGAAGCGCGAAGGAAAAGCACCGCGACCGCTGGCAACGACGGTGCCGCGCACCCGAACACGCGATGCCCTGCGAAAAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGATTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACCATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAAGTGAAGGATCTTATCTTTTACCTGCAGTCGAAGCACATTTCCACGTCCGGTTGCGTCGAAAAAGACGACCTGATAAATCTGGTGATTGCTCATGTAAACTCTGGCGGCAGCTCGCCCCGCACGCCCGGCAGCTTCAGTGCCACCTCGTCCAACACGGAGTCGGCATCCGGTGGCTCATCCCGGTACGGCAGCTTCTATCGG]




>consensus_3525#0
CCGCCCACGCGTCCGGCGAAAAAAATAAAGATTGGTCAGCGAATAGCTCTGCCCCCTGCG
TATGGCATTGTGAAATATTTAGCGATGTTTGCCTCATCACACTACCATCTCAGTAGTGCC
CGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAAGGCTGCATTCCCCTTGTAAACACTA
CGCCCAGAACCATCCCGTCCCGCAAATCATTCTCCACACGGCGCACACACACACACACAC
TCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAGCAGGGCTCGAGGGAAGTAGTCGCAA
TTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTTCGTTTCCGTTTCCTTCCGTCGTCGC
ACTAGTCGTCGTTTGCTGCCGATCGAGCGAAGGAAAAGCACCGCGACCGCTGGCGACGAC
GGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAAAAGTGCAATGTGAAGTTCGGCATCA
TAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGACTGTTCTGCCGGAACTGCCTGTCGA
AGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACCATCTTCACCAAGCGGCCTCTATCGC
GCATCGATCTGGCCCAGCTAAAAGTGAAGGATCTTATCTTTTACCTGCAGTCGAAGCACA
TTTCCACGTCCGGTTGCGTCGAAAAAGACGACCTGATAAATCTGGTGATTGCTCATGTAA
ACTCTGGCGGCAGCTCGCCCCGCACGCCCGGCAGCTTCAGTGCCACCTCGTCCAACACGG
AGTCGGCATCCGGTGGCTCATCCCGGTACGGCAGCTTCTATCGG

consensusID : consensus_3525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CCGCCCACGCGTCCGGGAACTGTCAACAAAACAAAAGTTAGCGAAAAAAATAAAGATTGGTCAGCGAATAGCTCTGCCCCCTGCGTATGGCATTGTGAAATATTTAGCGATGTTTGCCTCATCACACTACCATCTCAGTAGTGCCCGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAAGGCTGCATTCCCCTTGTAAACACTACGCCCAGAACCATCCCGTCCCGCAAATCATTCTCCACACGGCGCACACACACACACACACTCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAGCAGGGCTCGAGGGAAGTAGTCGCAATTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTTCGTTTCCGTTTCCTTCCGTCGTCGCACTAGTCGTCGTTTGCTGCCGATCGAGCGAAGGAAAAGCACCGCGACCGCTGGCGACGACGGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAAAAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGACTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACCATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAAAGTGAA]

[+] EMBL BM645562             [CCGCCCACGCGTCCGGGAACTGTCAACAAAACAAAAGTTAGCGAAAAAAATAAAGATTGGTCAGCGAATAGCTCTGCCCCCTGCGTATGGCATTGTGAAATATTTAGCGATGTTTGCCTCATCACACTACCATCTCAGTAGTGCCCGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAAGGCTGCATTCCCCTTGTAAACACTACGCCCAGAACCATCCCGTCCCGCAAATCATTCTCCACACGGCGCACACACACACACACACTCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAGCAGGGCTCGAGGGAAGTAGTCGCAATTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTTCGTTTCCGTTTCCTTCCGTCGTCGCACTAGTCGTCGTTTGCTGCCGATCGAGCGAAGGAAAAGCACCGCGACCGCTGGCGACGACGGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAAAAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGACTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACCATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAAAGTGAA]




>consensus_3525#1
CCGCCCACGCGTCCGGGAACTGTCAACAAAACAAAAGTTAGCGAAAAAAATAAAGATTGG
TCAGCGAATAGCTCTGCCCCCTGCGTATGGCATTGTGAAATATTTAGCGATGTTTGCCTC
ATCACACTACCATCTCAGTAGTGCCCGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAA
GGCTGCATTCCCCTTGTAAACACTACGCCCAGAACCATCCCGTCCCGCAAATCATTCTCC
ACACGGCGCACACACACACACACACTCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAG
CAGGGCTCGAGGGAAGTAGTCGCAATTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTT
CGTTTCCGTTTCCTTCCGTCGTCGCACTAGTCGTCGTTTGCTGCCGATCGAGCGAAGGAA
AAGCACCGCGACCGCTGGCGACGACGGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAA
AAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGA
CTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACC
ATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAAAGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3525#0      -------------------CCGCCCACGCGTC------CGGCGAAAAAAATAAAGATTGG 35
consensus_3525#1      CCGCCCACGCGTCCGGGAACTGTCAACAAAACAAAAGTTAGCGAAAAAAATAAAGATTGG 60
                                         * * * **    *        ********************

consensus_3525#0      TCAGCGAATAGCTCTGCCCCCTGCGTATGGCATTGTGAAATATTTAGCGATGTTTGCCTC 95
consensus_3525#1      TCAGCGAATAGCTCTGCCCCCTGCGTATGGCATTGTGAAATATTTAGCGATGTTTGCCTC 120
                      ************************************************************

consensus_3525#0      ATCACACTACCATCTCAGTAGTGCCCGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAA 155
consensus_3525#1      ATCACACTACCATCTCAGTAGTGCCCGTGCCACAATCGCTTGTTCCGTCGAGAAGGGAAA 180
                      ************************************************************

consensus_3525#0      GGCTGCATTCCCCTTGTAAACACTACGCCCAGAACCATCCCGTCCCGCAAATCATTCTCC 215
consensus_3525#1      GGCTGCATTCCCCTTGTAAACACTACGCCCAGAACCATCCCGTCCCGCAAATCATTCTCC 240
                      ************************************************************

consensus_3525#0      ACACGGCGCACACACACACACACACTCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAG 275
consensus_3525#1      ACACGGCGCACACACACACACACACTCTCTGTGTCCGTGGTGCCAGCAAGTGTGTGGCAG 300
                      ************************************************************

consensus_3525#0      CAGGGCTCGAGGGAAGTAGTCGCAATTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTT 335
consensus_3525#1      CAGGGCTCGAGGGAAGTAGTCGCAATTTCTCCAGCTTGCCCGTGCGTCAATGGTGGCGTT 360
                      ************************************************************

consensus_3525#0      CGTTTCCGTTTCCTTCCGTCGTCGCACTAGTCGTCGTTTGCTGCCGATCGAGCGAAGGAA 395
consensus_3525#1      CGTTTCCGTTTCCTTCCGTCGTCGCACTAGTCGTCGTTTGCTGCCGATCGAGCGAAGGAA 420
                      ************************************************************

consensus_3525#0      AAGCACCGCGACCGCTGGCGACGACGGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAA 455
consensus_3525#1      AAGCACCGCGACCGCTGGCGACGACGGCGCCGCGCACCCGTCCACGCGATGCCCTGCGAA 480
                      ************************************************************

consensus_3525#0      AAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGA 515
consensus_3525#1      AAGTGCAATGTGAAGTTCGGCATCATAACGCGCAAAAAGTCCTGCTATGAGTGTCACCGA 540
                      ************************************************************

consensus_3525#0      CTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACC 575
consensus_3525#1      CTGTTCTGCCGGAACTGCCTGTCGAAGCGGCAGGAGCGGTTCCTCTGCCCGAACTGTACC 600
                      ************************************************************

consensus_3525#0      ATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAA-GTGAAGGATCT 634
consensus_3525#1      ATCTTCACCAAGCGGCCTCTATCGCGCATCGATCTGGCCCAGCTAAAAAGTGAA------ 654
                      ************************************************ *****      

consensus_3525#0      TATCTTTTACCTGCAGTCGAAGCACATTTCCACGTCCGGTTGCGTCGAAAAAGACGACCT 694
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      GATAAATCTGGTGATTGCTCATGTAAACTCTGGCGGCAGCTCGCCCCGCACGCCCGGCAG 754
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      CTTCAGTGCCACCTCGTCCAACACGGAGTCGGCATCCGGTGGCTCATCCCGGTACGGCAG 814
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      CTTCTATCGG 824
consensus_3525#1      ----------