cluster # 3526

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Anopheles gambiae
cluster # 3526 cluster # 3526 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3526#0 length = 669 sequences # 1

consensus_3526#1 length = 648 sequences # 1
consensus_3526#2 length = 165 sequences # 1

consensusID : consensus_3526#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [GAGTTAGGTCCAATATTAGTACACAACTGAACGCACTAACATGAGTGTGTCGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATCTGCTGCTGCTGCTGCGGCTACTACCGTTTCTGATCTCGCAGGTAAACGCGGAAAACCGGCCCCTATTCATTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCACACACACACACGGACGCAGGTGAAACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTCACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGACGCAGTGCGAGAGCGATTTGTATGTACGTTTGATGATATTATGATTGAGTGGAAACAAGCGAGCGAAAGAGGGTTGCACAATCTGAATGACAAATAATTAAATGCAAA]

[+] EMBL BX614742             [GAGTTAGGTCCAATATTAGTACACAACTGAACGCACTAACATGAGTGTGTCGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATCTGCTGCTGCTGCTGCGGCTACTACCGTTTCTGATCTCGCAGGTAAACGCGGAAAACCGGCCCCTATTCATTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCACACACACACACGGACGCAGGTGAAACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTCACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGACGCAGTGCGAGAGCGATTTGTATGTACGTTTGATGATATTATGATTGAGTGGAAACAAGCGAGCGAAAGAGGGTTGCACAATCTGAATGACAAATAATTAAATGCAAA]




>consensus_3526#0
GAGTTAGGTCCAATATTAGTACACAACTGAACGCACTAACATGAGTGTGTCGCAAAAGAA
TGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAA
AGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATCTGCTGCTGCTG
CTGCGGCTACTACCGTTTCTGATCTCGCAGGTAAACGCGGAAAACCGGCCCCTATTCATT
GTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTA
TTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTAT
GCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCACACACA
CACACGGACGCAGGTGAAACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTC
ACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGC
GTGTGCCCGCCGTTAGTGCGACGCAGTGCGAGAGCGATTTGTATGTACGTTTGATGATAT
TATGATTGAGTGGAAACAAGCGAGCGAAAGAGGGTTGCACAATCTGAATGACAAATAATT
AAATGCAAA

consensusID : consensus_3526#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGGTGAACTTCCGAAAACGAAAACGAGTGAAGTGCTATCGGGCTTATATTTCTCCATTCAGGATCATTTCCTGTAGCAACACGAATTCGTCCTATTTTCGTCTTGCGGCGTCTGTTTGTTCCCGAAAAAAGCATCCTAGCGGAGGAAAAGCATCTGCTACGGTGTGATCAAAGGAGTGTGTGTGTGTGTGTGAGTGTGAGTGTGACGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATTTGCTGCTGCTGCTGCTGCGGCTGCTACCGTTTCTGATCTCGCAGGCAAACGCGGAAAACCGGCCCCTATTCGGTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCAACAACACCGGCACGTAATCTTAATATAAATCTGCCAGAAAACGTGACCCAAGGTCCGCGAGGGCCACGGGCACCC]

[+] EMBL BM621085             [CCGGTGAACTTCCGAAAACGAAAACGAGTGAAGTGCTATCGGGCTTATATTTCTCCATTCAGGATCATTTCCTGTAGCAACACGAATTCGTCCTATTTTCGTCTTGCGGCGTCTGTTTGTTCCCGAAAAAAGCATCCTAGCGGAGGAAAAGCATCTGCTACGGTGTGATCAAAGGAGTGTGTGTGTGTGTGTGAGTGTGAGTGTGACGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATTTGCTGCTGCTGCTGCTGCGGCTGCTACCGTTTCTGATCTCGCAGGCAAACGCGGAAAACCGGCCCCTATTCGGTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCAACAACACCGGCACGTAATCTTAATATAAATCTGCCAGAAAACGTGACCCAAGGTCCGCGAGGGCCACGGGCACCC]




>consensus_3526#1
CCGGTGAACTTCCGAAAACGAAAACGAGTGAAGTGCTATCGGGCTTATATTTCTCCATTC
AGGATCATTTCCTGTAGCAACACGAATTCGTCCTATTTTCGTCTTGCGGCGTCTGTTTGT
TCCCGAAAAAAGCATCCTAGCGGAGGAAAAGCATCTGCTACGGTGTGATCAAAGGAGTGT
GTGTGTGTGTGTGAGTGTGAGTGTGACGCAAAAGAATGTGTTCCAGTGTACGCGTGTACT
AACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAA
CCGAACCTGCTTCACACAACCGATTTGCTGCTGCTGCTGCTGCGGCTGCTACCGTTTCTG
ATCTCGCAGGCAAACGCGGAAAACCGGCCCCTATTCGGTGTGGCAGCAGCAGCGGCGGGT
TTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACG
GCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTA
CCGCCACCGGAATCGACCCCCCAACAACACTCAACAACACCGGCACGTAATCTTAATATA
AATCTGCCAGAAAACGTGACCCAAGGTCCGCGAGGGCCACGGGCACCC

consensusID : consensus_3526#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence

                              [AACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTKACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGAAGCAGTGCGAGAGCGATTTGTATGTACCCTTCGTGCCGAAT]

[-] EMBL AGA283083            [AACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTKACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGAAGCAGTGCGAGAGCGATTTGTATGTACCCTTCGTGCCGAAT]




>consensus_3526#2
AACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTKACCGGCAGATCCTGGGC
CGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGT
GCGAAGCAGTGCGAGAGCGATTTGTATGTACCCTTCGTGCCGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3526#0      GAGTTAGGTCCAATATTAGTACACAACTGAACGCACTAACATGAGTGTGTCGCAAAAGAA 60
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      ------------------------------------------------------------
                                                                                  

consensus_3526#0      TGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAA 120
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      ------------------------------------------------------------
                                                                                  

consensus_3526#0      AGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATCTGCTGCTGCTG 180
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      -----------------------------------------CCGGTGAACTTCCGAAAAC 19
                                                                                  

consensus_3526#0      CTGCGGCTACTACCGTTTCTGATCTCGCAGGTAAACGCGGAAAACCGGCCCCTATTCATT 240
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      GAAAACGAGTGAAGTGCTATCGGGCTTATATTTCTCCATTCAGGATCATTTCCTGTAGCA 79
                                                                                  

consensus_3526#0      GTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTA 300
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      ACACGAATTCGTCCTATTTTCGTCTTGCGGCGTCTGTTTGTTCCCGAAAAAAGCATCCTA 139
                                                                                  

consensus_3526#0      TTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTAT 360
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      GCGGAGGAAAAGCATCTGCTACGGTGTGATCAAAGGAGTGTGTGTGTGTGTGTGAGTGTG 199
                                                                                  

consensus_3526#0      GCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCACACACA 420
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      AGTGTGACGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGT 259
                                                                                  

consensus_3526#0      CACACGGACGCAGGTGAAAC-AGCAGTGTACTATCAGTAGACCGAGC--ACATTGGTAAG 477
consensus_3526#2      -----------------AAC-AGCAGTGTACTATCAGTAGACCGAGC--ACATTGGTAAG 40
consensus_3526#1      AGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAA 319
                                       * * *** *  **  ****    ***** *   * *     * 

consensus_3526#0      CTCACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAG-CGCGTTCA 536
consensus_3526#2      CTKACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAG-CGCGTTCA 99
consensus_3526#1      CCGATTTGCTGCTGCTGCTGCTGCGGCTGCTACCGTTTCTG-ATCTCGCAGGCAAACGCG 378
                      *  *   ** * * ***   *   *  ***  *    * ** ** *  *** *     * 

consensus_3526#0      GAGCGTGTGCCCGCCGTTAGTGCGA-CGCAGTGCGAGAGCGATTTGTATGTACG-TTTGA 594
consensus_3526#2      GAGCGTGTGCCCGCCGTTAGTGCGA-AGCAGTGCGAGAGCGATTTGTATGTACC-CTTCG 157
consensus_3526#1      GAAAACCGGCCCCTATTCGGTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCC 438
                      **      ****    *  *** *   ****     * * * **** ***  *       

consensus_3526#0      TGATATTATGATTGAGTGGAAACAAGCGAGCGAAAGAGGGTTGCACAATCTGAATGACAA 654
consensus_3526#2      TGCCGA-AT--------------------------------------------------- 165
consensus_3526#1      TGAAGG-ATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGAC 497
                      **     **                                                   

consensus_3526#0      ATAATTAAATGCAAA--------------------------------------------- 669
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      GTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGAC 557
                                                                                  

consensus_3526#0      ------------------------------------------------------------
consensus_3526#2      ------------------------------------------------------------
consensus_3526#1      CCCCCAACAACACTCAACAACACCGGCACGTAATCTTAATATAAATCTGCCAGAAAACGT 617
                                                                                  

consensus_3526#0      -------------------------------
consensus_3526#2      -------------------------------
consensus_3526#1      GACCCAAGGTCCGCGAGGGCCACGGGCACCC 648