cluster # 3532

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Anopheles gambiae
cluster # 3532 cluster # 3532 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3532#0 length = 336 sequences # 1

consensus_3532#1 length = 202 sequences # 1
consensus_3532#2 length = 159 sequences # 1

consensusID : consensus_3532#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [CGTCCGGCCAGATGCGTCAAAATACGGCCAAAGTCGAGATGGTGGGCGAGCGCTGCCAGCTGCTCCTCCGACTGTACGATTTGGCCAGATGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCATCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGTGAGACGGAAAACGGCTGGAAGCGGGAGCTGTCGGGCGAGCTGATCGAGGCGCTCGATCGCTGGACGTTGGACAGGGTCCCCAAGGACTGATAGCAAATATGCGACCCTGTTTCAATGACTTTGAAGGGATAAAC]

[+] EMBL BM614685             [CGTCCGGCCAGATGCGTCAAAATACGGCCAAAGTCGAGATGGTGGGCGAGCGCTGCCAGCTGCTCCTCCGACTGTACGATTTGGCCAGATGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCATCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGTGAGACGGAAAACGGCTGGAAGCGGGAGCTGTCGGGCGAGCTGATCGAGGCGCTCGATCGCTGGACGTTGGACAGGGTCCCCAAGGACTGATAGCAAATATGCGACCCTGTTTCAATGACTTTGAAGGGATAAAC]




>consensus_3532#0
CGTCCGGCCAGATGCGTCAAAATACGGCCAAAGTCGAGATGGTGGGCGAGCGCTGCCAGC
TGCTCCTCCGACTGTACGATTTGGCCAGATGCGTCAAAATACGGCCGTCAATCGCAGACA
GTGGGTCGAGTACAATCTCATCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGA
CATGCAGTTCATCCGGCGCGGTGAGACGGAAAACGGCTGGAAGCGGGAGCTGTCGGGCGA
GCTGATCGAGGCGCTCGATCGCTGGACGTTGGACAGGGTCCCCAAGGACTGATAGCAAAT
ATGCGACCCTGTTTCAATGACTTTGAAGGGATAAAC

consensusID : consensus_3532#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [GTACACGGAGGAGCAGCTGGCAGCGCTCGCCCACCATCTCGACTTTGGCCAGAAGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGCGAGACGGACGGCTGGAAGAGGGAGCTGACGGGCGAGCTG]

[+] EMBL BX613295             [GTACACGGAGGAGCAGCTGGCAGCGCTCGCCCACCATCTCGACTTTGGCCAGAAGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGCGAGACGGACGGCTGGAAGAGGGAGCTGACGGGCGAGCTG]




>consensus_3532#1
GTACACGGAGGAGCAGCTGGCAGCGCTCGCCCACCATCTCGACTTTGGCCAGAAGCGTCA
AAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCCAGCAAACGAACCGGCC
GGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGCGAGACGGACGGCTGGAA
GAGGGAGCTGACGGGCGAGCTG

consensusID : consensus_3532#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [CGCACATGCCTGCTATTGNGTNTAAACGGAGGAGTTGCCNNAGGTTTAATGTGATTTATTTAAAATGTTTGGCCAATTATAATTTAGAATTGATTTTTTACATATGTTTATCCCTTCAAAGTTATTGAAACAGGGTCGCATATTTGCTATCCTTGGGGA]

[+] EMBL BX466838             [CGCACATGCCTGCTATTGNGTNTAAACGGAGGAGTTGCCNNAGGTTTAATGTGATTTATTTAAAATGTTTGGCCAATTATAATTTAGAATTGATTTTTTACATATGTTTATCCCTTCAAAGTTATTGAAACAGGGTCGCATATTTGCTATCCTTGGGGA]




>consensus_3532#2
CGCACATGCCTGCTATTGNGTNTAAACGGAGGAGTTGCCNNAGGTTTAATGTGATTTATT
TAAAATGTTTGGCCAATTATAATTTAGAATTGATTTTTTACATATGTTTATCCCTTCAAA
GTTATTGAAACAGGGTCGCATATTTGCTATCCTTGGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3532#0      CGTCCGGCCAGATGCGTCAAAATACGGCCAAAGTCGAGATGGTGGGCGAGC-GCTGCCAG 59
consensus_3532#1      -------------------------------------GTACACGGAGGAGCAGCTGGCAG 23
consensus_3532#2      ------------------------------------------------------------
                                                                                  

consensus_3532#0      CTGCTCCTCCGACTGTACGA-TTTGGCCAGATGCGTCAAAATACGGCCGTCAATCGCAGA 118
consensus_3532#1      C-GCTCGCCCACCATCTCGACTTTGGCCAGAAGCGTCAAAATACGGCCGTCAATCGCAGA 82
consensus_3532#2      -------CGCACATGCCTGCTATTGNGTNTAAACGGAGGA-----GTTGCCNNAGGTTTA 48
                               *        *   ***     *  **    *     *  * *    *   *

consensus_3532#0      CAGTGGGTCGAGTACAATCTCATCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAAC 178
consensus_3532#1      CAGTGGGTCGAGTACAATCT---CCAGCAAACGAACCGGCCGGACCGGGTGAACGACAAC 139
consensus_3532#2      ATGTGATTTATTTAAAATGT---TTGGCCAATTA-TAATTTAGAATTGATTTTTTACAT- 103
                        ***  *    ** *** *      ** **  *        **   * *     ***  

consensus_3532#0      GACATGCAGTTCATCCGGCGCGGTGAGACGGAAAACGGCTGGAAGCGGGAGCTGTCGGGC 238
consensus_3532#1      GACATGCAGTTCATCCGGCGCGGCGAGACGGA---CGGCTGGAAGAGGGAGCTGACGGGC 196
consensus_3532#2      -ATGTTTATCCCTTCAAAGTTATTGAAACAGG-----GTCGCATATTTGCTATCCTTGGG 157
                       *  *  *   * **         ** ** *      *  * *     *   *    ** 

consensus_3532#0      GAGCTGATCGAGGCGCTCGATCGCTGGACGTTGGACAGGGTCCCCAAGGACTGATAGCAA 298
consensus_3532#1      GAGCTG------------------------------------------------------ 202
consensus_3532#2      GA---------------------------------------------------------- 159
                      **                                                          

consensus_3532#0      ATATGCGACCCTGTTTCAATGACTTTGAAGGGATAAAC 336
consensus_3532#1      --------------------------------------
consensus_3532#2      --------------------------------------