cluster # 3548

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Anopheles gambiae
cluster # 3548 cluster # 3548 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3548#0 length = 631 sequences # 2

consensus_3548#1 length = 548 sequences # 1

consensusID : consensus_3548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 631
fasta sequence

                              [CCGCGGACGCGTGGGTCGGAATTGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAAGCAACGCTAAGCGCGCAAAGCTTTAGAGTAC]

[+] EMBL BM614078             [CCGCGGACGCGTGGGTCGGAATTGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAAGCAA                           ]
[+] EMBL BM628479             [         ccggttTCGGAATTGTTTT CCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGGCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCCCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCATCATATCAAACAAGTCCGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAAGCAACGCTAAGCGCGCAAAGCTTTAGAGTAC]




>consensus_3548#0
CCGCGGACGCGTGGGTCGGAATTGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGG
AAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACC
GGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCA
CCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTT
CCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAG
ACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTG
CCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCC
TTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATC
GAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTC
CGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAA
GCAACGCTAAGCGCGCAAAGCTTTAGAGTAC

consensusID : consensus_3548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [CCGCCCACGCGTCCGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACGATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAAGCCACT]

[+] EMBL BM641872             [CCGCCCACGCGTCCGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACGATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAAGCCACT]




>consensus_3548#1
CCGCCCACGCGTCCGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCAC
GTTACAATCATGAGCGTGAGTAAAACGATCACCGAAACGGTCAGCGCCACCGGCAAGGCG
GCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCC
GTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTG
AAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTG
CGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTT
GCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGC
CACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCC
CCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAA
AAGCCACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3548#0      CCGCGGACGCGTGGGTCGGAATTGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGG 60
consensus_3548#1      CCGCCCACGCGT---------CCGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGG 51
                      ****  ******           *************************************

consensus_3548#0      AAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACC 120
consensus_3548#1      AAAGTGCACGTTACAATCATGAGCGTGAGTAAAACGATCACCGAAACGGTCAGCGCCACC 111
                      *********************************** ************************

consensus_3548#0      GGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCA 180
consensus_3548#1      GGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCA 171
                      ************************************************************

consensus_3548#0      CCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTT 240
consensus_3548#1      CCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTT 231
                      ************************************************************

consensus_3548#0      CCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAG 300
consensus_3548#1      CCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAG 291
                      ************************************************************

consensus_3548#0      ACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTG 360
consensus_3548#1      ACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTG 351
                      ************************************************************

consensus_3548#0      CCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCC 420
consensus_3548#1      CCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCC 411
                      ************************************************************

consensus_3548#0      TTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATC 480
consensus_3548#1      TTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATC 471
                      ************************************************************

consensus_3548#0      GAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTC 540
consensus_3548#1      GAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTC 531
                      ************************************************************

consensus_3548#0      CGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAA 600
consensus_3548#1      CGCAGCCAAAAGCCACT------------------------------------------- 548
                      ***********     *                                           

consensus_3548#0      GCAACGCTAAGCGCGCAAAGCTTTAGAGTAC 631
consensus_3548#1      -------------------------------