cluster # 3567

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Anopheles gambiae
cluster # 3567 cluster # 3567 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3567#0 length = 436 sequences # 1

consensus_3567#1 length = 419 sequences # 2

consensusID : consensus_3567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTCCCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAAAGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATATCCCTACCCTAAATGC]

[+] EMBL BX466652             [CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTCCCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAAAGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATATCCCTACCCTAAATGC]




>consensus_3567#0
CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACA
ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTC
CCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATT
CTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGG
TGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGT
TTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAA
AGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATA
TCCCTACCCTAAATGC

consensusID : consensus_3567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence

                              [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT]

[+] EMBL AGA283689            [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT]
[+] EMBL AGA284104            [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAATGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCT                                                                                                  ]




>consensus_3567#1
TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAA
CGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTA
TCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTG
TTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTC
TCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATT
CGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGA
CGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3567#0      CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACA 60
consensus_3567#1      -----------TTTTTTTTAATGGGTT---AAATCCTTTCTTTTTTTTATTTCAAGAACA 46
                                 ***********   **   ******** *********************

consensus_3567#0      ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTC 120
consensus_3567#1      ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTT 106
                      *********************************************************** 

consensus_3567#0      CCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATT 180
consensus_3567#1      CCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTG 166
                      ******* ** ** * *   ***  *   ** *  *    *  * *   *    *   * 

consensus_3567#0      CTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGG 240
consensus_3567#1      ATA--ACAACGTATTGTTTTTATCTCG-GTTAGGATA-AATGCTCATATCTCTCTGCCTC 222
                       *     *    ****     *    * * **** ** * *  * ****  *  *     

consensus_3567#0      TGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGT 300
consensus_3567#1      TCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCG--TTTCCTTCTTCT 280
                      *  ***      ** ** *    **  * ***    ** ** **     ** *   *  *

consensus_3567#0      TTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAA 360
consensus_3567#1      TGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATT 340
                      *       ** ***  *    * *   * ** *** * *  **      * **       

consensus_3567#0      AGAAAACAGT--CCAATCCATCTTCTCGTTTTCTTCCA-ACAATAACATTACACAGAAAC 417
consensus_3567#1      CCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAAT 400
                        **    *   ***    *  * *   ** * **  * **  *    **** *  *** 

consensus_3567#0      ATATCCCTACCCTAAATGC 436
consensus_3567#1      TTCAATTCGTTTCAGGTGT 419
                       *           *  **