|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence
[AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGGCACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGATGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACAAACATTCAGTGTACATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCCCGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACACACGCTTTTTCGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCACAGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT]
[+] EMBL AGA283737 [AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGGCACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGATGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTG ]
[-] EMBL AGA285027 [ GCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACAAACATTCAGTGTACATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCCCGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACACACGCTTTTTCGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCACAGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT]
consensusID : consensus_3569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[CCGCGGACGCGTGGGACACAATACAGCAGCAGCCACACACGCAGTGTGCAGTTCGACGGTGAAACACGCGCGCCATAGGGAGGAAAAGGGCTTGTGCTGTGGGGATGTTTTCTTTTCCCTCGGAACACCAGTCGGAAAATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCTTCAGCTGTCTGCAGATGGATCCGTCCGGGGCGAAGGCGATGCACCATCACAAGAAGATTGCCGCGTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGCAGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAAGCTACGGCGATGAGTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCACCATCACCATCTGGCGGACGGGGGCGATGCGTACCGCAGCTCGGGTAGGAGTTCGCAGAACAGCTCGAACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA]
[+] EMBL BM644844 [CCGCGGACGCGTGGGACACAATACAGCAGCAGCCACACACGCAGTGTGCAGTTCGACGGTGAAACACGCGCGCCATAGGGAGGAAAAGGGCTTGTGCTGTGGGGATGTTTTCTTTTCCCTCGGAACACCAGTCGGAAAATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCTTCAGCTGTCTGCAGATGGATCCGTCCGGGGCGAAGGCGATGCACCATCACAAGAAGATTGCCGCGTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGCAGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAAGCTACGGCGATGAGTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCACCATCACCATCTGGCGGACGGGGGCGATGCGTACCGCAGCTCGGGTAGGAGTTCGCAGAACAGCTCGAACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3569#0 AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGG 60
consensus_3569#1 ----------------------------------CCGCGGACGCGTGGGACACAATACAG 26
**** * * * * *** * *
consensus_3569#0 CACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGA 120
consensus_3569#1 CAG--CAGCCACACACGCAGTGTGCAGTTCGACGGTGA-AACACGCGCGCCATAG--GGA 81
** **** **** * * * ** * * *** * * * * ***
consensus_3569#0 TGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGC 180
consensus_3569#1 GGAAAAGGGCTTGTGCTGTGGGGATGTTTT-CTTTTCCCTCGGAACACCAG--TCGGAAA 138
** * * * ** *** * *** ** * ** * * **
consensus_3569#0 GTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTC-TCGCT 239
consensus_3569#1 ATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCT 198
* ** ** * ** * *** *** * ** * * * ***
consensus_3569#0 TGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTG 299
consensus_3569#1 TCAGCTGTCTGCAGAT--GGAT--CCGTCCGGGGCGA------AGGCGATGCACC-ATCA 247
* * ** * ** *** * ** * *** * * ** **
consensus_3569#0 AAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATT-GC 358
consensus_3569#1 CAAGAAGATTGCCGC--GTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGC 305
*** ******** * * ** ** * ** ***** ** * * * **
consensus_3569#0 GGTAAGTGACGTTGCTGCTG-TATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCG-GC 416
consensus_3569#1 AGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAA-GCTACGGCGATGA 364
* * * * * * ** * ** * * * * * ** ** * *** ** * *
consensus_3569#0 GTGTT-CCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACA--AACATTCAGTGTA 473
consensus_3569#1 GTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCA 424
** * * * * * * * * *** * *** * ** * ** *
consensus_3569#0 CATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCC 533
consensus_3569#1 CCATCACCATCTGGCGGACGG--GGGCGATGCGTACCGCAGCTCG---GGTAGGAGTTCG 479
* * * * ** ** * **** * ** *** * *** * *
consensus_3569#0 CGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACA-CACGCTTTTT 592
consensus_3569#1 CAGAACAGCTCGA-ACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA--- 535
* * * *** *** * * * ** * * * ** * **
consensus_3569#0 CGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCAC 652
consensus_3569#1 ------------------------------------------------------------
consensus_3569#0 AGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT 688
consensus_3569#1 ------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||