cluster # 3574

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Anopheles gambiae
cluster # 3574 cluster # 3574 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3574#0 length = 970 sequences # 2

consensus_3574#1 length = 477 sequences # 1

consensusID : consensus_3574#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 970
fasta sequence

                              [TACGGCATGGAGAAGTGCTCGCTGCTGCGGCAGCAGATCGAGCAGAACCGGCTGAAGATGGCGGAGCGCGAGTCGAGCCAGCGGGAGATCGAGGAGAAGGTGATCGAAATCAAGCACAAGCTTGAGGCGACCCAGCAAACGCTGGTGGGCCGGTCGAGCACGGGCCTGGCGGATATCACGGCGGATCGATCGTTGGGCGATCCGCCGGACAGGTTGTGGCGCTCGGTCAGCAGCCACTCGTTTCTGGACGCTGAGATGACGGGGGTGGGAGCGAGGGTGTCGAGCTCCACGCCGGTGCGGCAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGACAGCGTGCGGCAGGCCCAGGTCAAGCGGAAAAGCGACGAAATGCTCGAACGCAAGGTGACGTCACTGGAGGACGAGCTGCACGAGAAGGAGCGCATTATTGATGAGCAGCTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAACTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCTAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGACCGAAACCGCTGTTCCCCGGTCGGCCGACGAGGAGCTCGAGACGGAAGCGGCCAAGCTCCGGCAGCAGCT]

[+] EMBL AGA283795            [TACGGCATGGAGAAGTGCTCGCTGCTGCGGCAGCAGATCGAGCAGAACCGGCTGAAGATGGCGGAGCGCGAGTCGAGCCAGCGGGAGATCGAGGAGAAGGTGATCGAAATCAAGCACAAGCTTGAGGCGACCCAGCAAACGCTGGTGGGCCGGTCGAGCACGGGCCTGGCGGATATCACGGCGGATCGATCGTTGGGCGATCCGCCGGACAGGTTGTGGCGCTCGGTCAGCAGCCACTCGTTTCTGGACGCTGAGATGACGGGGGTGGGAGCGAGGGTGTCGAGCTCCACGCCGGTGCGGCAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM588279             [                                                                                                                                                                                                                                                                                 ccGGTGTCGAGCTCCACGCCGGTGCGGCAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGACAGCGTGCGGCAGGCCCAGGTCAAGCGGAAAAGCGACGAAATGCTCGAACGCAAGGTGACGTCACTGGAGGACGAGCTGCACGAGAAGGAGCGCATTATTGATGAGCAGCTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAACTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCTAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGACCGAAACCGCTGTTCCCCGGTCGGCCGACGAGGAGCTCGAGACGGAAGCGGCCAAGCTCCGGCAGCAGCT]




>consensus_3574#0
TACGGCATGGAGAAGTGCTCGCTGCTGCGGCAGCAGATCGAGCAGAACCGGCTGAAGATG
GCGGAGCGCGAGTCGAGCCAGCGGGAGATCGAGGAGAAGGTGATCGAAATCAAGCACAAG
CTTGAGGCGACCCAGCAAACGCTGGTGGGCCGGTCGAGCACGGGCCTGGCGGATATCACG
GCGGATCGATCGTTGGGCGATCCGCCGGACAGGTTGTGGCGCTCGGTCAGCAGCCACTCG
TTTCTGGACGCTGAGATGACGGGGGTGGGAGCGAGGGTGTCGAGCTCCACGCCGGTGCGG
CAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGACAGC
GTGCGGCAGGCCCAGGTCAAGCGGAAAAGCGACGAAATGCTCGAACGCAAGGTGACGTCA
CTGGAGGACGAGCTGCACGAGAAGGAGCGCATTATTGATGAGCAGCTCGGTGCACTGTCC
CGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAG
CTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCA
GCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAA
AAGAAAAGTAAAGCGCCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTG
CACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAACTCGAA
GCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATC
GAGCTGAACGTGATGACGGCTAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGA
CCGAAACCGCTGTTCCCCGGTCGGCCGACGAGGAGCTCGAGACGGAAGCGGCCAAGCTCC
GGCAGCAGCT

consensusID : consensus_3574#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [CTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGATTGTATTGTGAACTTTCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAGCTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCGAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGGCCGAAACCGCTGTTCCCCCGGT]

[-] EMBL AGA285086            [CTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGATTGTATTGTGAACTTTCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAGCTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCGAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGGCCGAAACCGCTGTTCCCCCGGT]




>consensus_3574#1
CTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCC
GAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATT
TCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGG
GCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGATTGTATTGTGAACTTTCAGCACCCG
CCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACA
CGCTCGAGCAGGCGCTGGCCGCGCACGAGCTCGAAGCGGAGCGCATGAACCAGCAGATGG
ACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCGAACG
TGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGGCCGAAACCGCTGTTCCCCCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3574#0      TACGGCATGGAGAAGTGCTCGCTGCTGCGGCAGCAGATCGAGCAGAACCGGCTGAAGATG 60
consensus_3574#1      ------------------------------------------------------------
                                                                                  

consensus_3574#0      GCGGAGCGCGAGTCGAGCCAGCGGGAGATCGAGGAGAAGGTGATCGAAATCAAGCACAAG 120
consensus_3574#1      ------------------------------------------------------------
                                                                                  

consensus_3574#0      CTTGAGGCGACCCAGCAAACGCTGGTGGGCCGGTCGAGCACGGGCCTGGCGGATATCACG 180
consensus_3574#1      ------------------------------------------------------------
                                                                                  

consensus_3574#0      GCGGATCGATCGTTGGGCGATCCGCCGGACAGGTTGTGGCGCTCGGTCAGCAGCCACTCG 240
consensus_3574#1      ------------------------------------------------------------
                                                                                  

consensus_3574#0      TTTCTGGACGCTGAGATGACGGGGGTGGGAGCGAGGGTGTCGAGCTCCACGCCGGTGCGG 300
consensus_3574#1      ------------------------------------------------------------
                                                                                  

consensus_3574#0      CAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGACAGC 360
consensus_3574#1      ------------------------------------------------------------
                                                                                  

consensus_3574#0      GTGCGGCAGGCCCAGGTCAAGCGGAAAAGCGACGAAATGCTCGAACGCAAGGTGACGTCA 420
consensus_3574#1      ------------------------------------------------------------
                                                                                  

consensus_3574#0      CTGGAGGACGAGCTGCACGAGAAGGAGCGCATTATTGATGAGCAGCTCGGTGCACTGTCC 480
consensus_3574#1      ---------------------------------------------CTCGGTGCACTGTCC 15
                                                                   ***************

consensus_3574#0      CGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAG 540
consensus_3574#1      CGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAG 75
                      ************************************************************

consensus_3574#0      CTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCA 600
consensus_3574#1      CTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCA 135
                      ************************************************************

consensus_3574#0      GCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAA 660
consensus_3574#1      GCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAA 195
                      ************************************************************

consensus_3574#0      AAGAAAAGTAAAGCGCCAG--------------------CACCCGCCCCCTTCTCGGAGG 700
consensus_3574#1      AAGAAAAGTAAAGCGCCAGATTGTATTGTGAACTTTCAGCACCCGCCCCCTTCTCGGAGG 255
                      *******************                    *********************

consensus_3574#0      ACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGC 760
consensus_3574#1      ACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGC 315
                      ************************************************************

consensus_3574#0      TGGCCGCGCACGAACTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGT 820
consensus_3574#1      TGGCCGCGCACGAGCTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGT 375
                      ************* **********************************************

consensus_3574#0      CGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCTAACGTGTCGGTGCTGCAGG 880
consensus_3574#1      CGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCGAACGTGTCGGTGCTGCAGG 435
                      **************************************** *******************

consensus_3574#0      AGAAGCTAAAGACGAGCGGACCGAAACCGCTGTTCCCCGGTCGGCCGACGAGGAGCTCGA 940
consensus_3574#1      AGAAGCTAAAGACGAGCGGGCCGAAACCGCTGTTCCCCCGGT------------------ 477
                      ******************* ****************** *                    

consensus_3574#0      GACGGAAGCGGCCAAGCTCCGGCAGCAGCT 970
consensus_3574#1      ------------------------------