|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGATTGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACTAATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAATCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGTCATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGGCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATGTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTTTATCACCATGTCAAGGAACTGAAG]
[+] EMBL AGA283909 [TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGATTGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACTAATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAATCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGTCATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGGCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAA ]
[-] EMBL AGA285203 [ TGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGCCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATGTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTTTATCACCATGTCAAGGAACTGAAG]
consensusID : consensus_3584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[CAGTTGCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTTTATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTTGGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTCACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAACATGAACGT]
[-] EMBL AY062190 [CAGTTGCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTTTATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTTGGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTCACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAACATGAACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3584#0 TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGAT 60
consensus_3584#1 ------------------------------------------------------------
consensus_3584#0 TGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACT 120
consensus_3584#1 ------------------------------------------------------------
consensus_3584#0 AATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAA 180
consensus_3584#1 ------------------------------------------------------------
consensus_3584#0 TCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGT 240
consensus_3584#1 ------------------------------------------------------------
consensus_3584#0 CATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGG 300
consensus_3584#1 ------------------------------------------------------------
consensus_3584#0 CACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTT 360
consensus_3584#1 -------------------------------------------------------CAGTT 5
*****
consensus_3584#0 ACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTC 420
consensus_3584#1 GCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTC 65
** * **** * **** ************** **************************
consensus_3584#0 ACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAG 480
consensus_3584#1 ACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAG 125
************************************************************
consensus_3584#0 CGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCAT 540
consensus_3584#1 CGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCAT 185
************************************************************
consensus_3584#0 GTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTT 600
consensus_3584#1 ATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTT 245
** ** ** ***** ***** ******** ******** ** ** ** * *********
consensus_3584#0 TATCACCATGTCAAGGAACTGAAG------------------------------------ 624
consensus_3584#1 TATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTT 305
********* ***** *** **
consensus_3584#0 ------------------------------------------------------------
consensus_3584#1 GGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTC 365
consensus_3584#0 ------------------------------------------------------------
consensus_3584#1 ACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAA 425
consensus_3584#0 ---------
consensus_3584#1 CATGAACGT 434
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||