These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [CAGAGGAGATTCGAATCCAGCTGCTCTGAACGAATACAGATTTAATTGGTTCCGAAATGGCTCCAATTGAATCCGTTTCACTACCGTACTCAATTCGTAGAGCAAAATACTTATACACTACAAAAGCAAGCTTGCAAGCAACCCTTGCTGTATTCATAACTACACGTATAAGCAAAAATAGATCTATGCTGAATTACAGGGTTTCACAAGTCAGTTTCGAATGTAATCATTTTTATTAACCGCACCCAAGATGTATTTCAACAGCTGTCAAATGGTTTATTTGTATCAAAATGAAATTTCAGTTTTAACACGTTATTTTCAACACATAACAAAGAACTGTCAAACTCATTCCAGCTGAAAGCCAACACAGCTCACAAAGTCATGCTGTAGAAATTAAAAAATATTATGATGGAAATGAAATGTCATATCGATCTGAAACAACATTTTGTACGCGGTGAATAACAATTTTTACATTCAAAACTGACTTGGAAAACCTTGTATTTATGTGCGTACCAGCAAAACCCGTTTACTGGATTTTTCAAGGTGTTCTAGTTGTTTCCAGATTTTCGGCAGTTTTGCCGAGTTTTGATAAATCTCGTGATTTATGGTTTGTTTCTCTATACTAACACTTTCCTGCATATGCTTTACCCGTTCCCGCAATTAGTTGGCATTATCTAAATATTTTTTAAACAAATAATTCAAACAATTTAGAGCATCGTTCAATACCTTGNTGAATAGTTTAAATAAATTAATTGAATTCAAATAATTTCTGGATCCTAACAAAAAATGATGAGCTGATCCATTGA] [+] EMBL BX622943 [CAGAGGAGATTCGAATCCAGCTGCTCTGAACGAATACAGATTTAATTGGTTCCGAAATGGCTCCAATTGAATCCGTTTCACTACCGTACTCAATTCGTAGAGCAAAATACTTATACACTACAAAAGCAAGCTTGCAAGCAACCCTTGCTGTATTCATAACTACACGTATAAGCAAAAATAGATCTATGCTGAATTACAGGGTTTCACAAGTCAGTTTCGAATGTAATCATTTTTATTAACCGCACCCAAGATGTATTTCAACAGCTGTCAAATGGTTTATTTGTATCAAAATGAAATTTCAGTTTTAACACGTTATTTTCAACACATAACAAAGAACTGTCAAACTCATTCCAGCTGAAAGCCAACACAGCTCACAAAGTCATGCTGTAGAAATTAAAAAATATTATGATGGAAATGAAATGTCATATCGATCTGAAACAACATTTTGTACGCGGTGAATAACAATTTTTACATTCAAAACTGACTTGGAAAACCTTGTATTTATGTGCGTACCAGCAAAACCCGTTTACTGGATTTTTCAAGGTGTTCTAGTTGTTTCCAGATTTTCGGCAGTTTTGCCGAGTTTTGATAAATCTCGTGATTTATGGTTTGTTTCTCTATACTAACACTTTCCTGCATATGCTTTACCCGTTCCCGCAATTAGTTGGCATTATCTAAATATTTTTTAAACAAATAATTCAAACAATTTAGAGCATCGTTCAATACCTTGNTGAATAGTTTAAATAAATTAATTGAATTCAAATAATTTCTGGATCCTAACAAAAAATGATGAGCTGATCCATTGA] consensusID : consensus_3597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence [TTTTTTTTGGTTTTCAACAGCTGTCAAATGGTTTATTTGTTCAAAATGAAATTTCAGTTTCAACACATGAATTCCAACACATTGCAAAGAACTAACAAGCTCAATTCAGCTTGATCAGTGTTGAAAATCATGTGGATAATATTATTGAGCGGTGAATATCAATGTTTACATTTGAAAGTGACTTGGAAAACCCTTTAAGTTTTGTATGGTGTGATCAGTGTTATCAACATGTGCAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGACCCAAGTGCCGAAACATCGAGTGATGTTAAAGGAGGTTTTGCGTTTGAAATGATCATGACAAAACTAATACAGCTAGAAAATTATATTAAACTGAAGGACGATGCATTGGAAAAAAGTTATAAAGAGTTAAGTTGCAGAATTGAAAATTATGTACAAAACAAGGAGAAAGAAAACGAAATAAACGAAAATGTTTATAAATCTTGCAATGCTGCACCATTTGCTTCTTCTGGTGTATATAAAATACAACCTGA] [+] EMBL AGA284232 [TTTTTTTTGGTTTTCAACAGCTGTCAAATGGTTTATTTGTTCAAAATGAAATTTCAGTTTCAACACATGAATTCCAACACATTGCAAAGAACTAACAAGCTCAATTCAGCTTGATCAGTGTTGAAAATCATGTGGATAATATTATTGAGCGGTGAATATCAATGTTTACATTTGAAAGTGACTTGGAAAACCCTTTAAGTTTTGTATGGTGTGATCAGTGTTATCAACATGTGCAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGACCCAAGTGCCGAAACATCGAGTGATGTTAAAGGAGGTTTTGCGTTTGAAATGATCATGACAAAACTAATACAGCTAGAAAATTATAT ] [+] EMBL BX602760 [ AGTGTTATCAACATGTGCAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGACCCAAGTGCCGAAACATCGAGTGATGTAAAAGGAGGTTTTGCGTTTGAAATGATCATGACAAAACTAATACAGCTAGAAGATCATATTAAACTGAAGGACGATGCATTGGAAAAAAGTTATAAAGAGTTAAGTTGCAGAATTGAAAATTATGTACAAAACAAGGAGAAAGAAAACGAAATAAACGAAAATGTTTATAAATCTTGCAATGCTGCACCATTTGCTTCTTCTGGTGTATATAAAATACAACCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3597#0 CAGAGGAGATTCGAATCCAGCTGCTCTGAACGAATACAGATTTAATTGGTTCCGAAATGG 60 consensus_3597#1 ------------------------------------------------------------ consensus_3597#0 CTCCAATTGAATCCGTTTCACTACCGTACTCAATTCGTAGAGCAAAATACTTATACACTA 120 consensus_3597#1 ------------------------------------------------------------ consensus_3597#0 CAAAAGCAAGCTTGCAAGCAACCCTTGCTGTATTCATAACTACACGTATAAGCAAAAATA 180 consensus_3597#1 ------------------------------------------------------------ consensus_3597#0 GATCTATGCTGAATTACAGGGTTTCACAAGTCAGTTTCGAATGTAATCATTTTTATTAAC 240 consensus_3597#1 ------------------------------------------------------------ consensus_3597#0 CGCACCCAAGATGTATTTCAACAGCTGTCAAATGGTTTATTTGTATCAAAATGAAATTTC 300 consensus_3597#1 ----TTTTTTTTGGTTTTCAACAGCTGTCAAATGGTTTATTTGT-TCAAAATGAAATTTC 55 ** ***************************** *************** consensus_3597#0 AGTTTTAACACGTTATTTTCAACACATAACAAAGAACTGTCAAACTCATTCCAGCT-GAA 359 consensus_3597#1 AGTTTCAACACATGAATTCCAACACATTGCAAAGAACTAACAAGCTCAATTCAGCTTGAT 115 ***** ***** * * ** ******** ********* *** **** * ***** ** consensus_3597#0 AGCCAACACAGCTCACAAAG-TCATGCTGTAGAAATTAAAAAATATTA-TGATGGAAATG 417 consensus_3597#1 CAGTGTTGAAAATCATGTGGATAATATTATTGAG--CGGTGAATATCAATGTTTACATTT 173 * *** * * ** * * ** ***** * ** * * * consensus_3597#0 AAATGTCATATCGATCTGAAACAACATTTTGTACGCGGTGAATAACAATTTTTACATTCA 477 consensus_3597#1 GAAAGTGACTTGGAAAACCCTTTAAGTTTTGTATGGTGTGATCAGTGTTATCAACATGTG 233 ** ** * * ** * ******* * **** * * * **** consensus_3597#0 AAACTGACTTGGAAAACCTTGTATTTATGTGCGTACCAGCAAAACCCGTTTACTGGATTT 537 consensus_3597#1 CAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGA 293 ** * * * * * ** * ** * ** * * ** * * * consensus_3597#0 TTCAAGGTGTTCTAGTTGTTTCCAGATTTTCGGCAGTTTTGCCGAGTTTTGATAAATCTC 597 consensus_3597#1 CCCAAGTGCCGAAACATCGAGTGATGTTAAAGGAGGTTTTGCG----TTTGA-AATGATC 348 **** * * * ** ** ******* ***** ** ** consensus_3597#0 GTGATTTATGGTTTGTTTCTCTATACTAACACTTTCCTGCATATGCTTTACCCGTTCCCG 657 consensus_3597#1 ATGACAAAACTAATACAGCTAGAAAATTATATTAAACTGAA---GGACGATGCATTG--G 403 *** * * ** * * * * * * *** * * * * ** * consensus_3597#0 CAATTAGTTGGCATTATCTAAATATTTTTTAAACAAATAATTCAAACAATTTAGAGCATC 717 consensus_3597#1 AAAAAAGTTATAAAGAGTTAAGT--TGCAGAATTGAAAATTATGTACAAAACAAGGAGAA 461 ** **** * * *** * * ** ** * * **** * * consensus_3597#0 GTTCAATACCTTGNTGAATAGTTTAAATAAATTAATTGAATTCAAATAATTTCTGGATCC 777 consensus_3597#1 AGAAAACGAAATAAACGAAAATGTTTATAAATCTTGCAATGCTGCACCATTTGCTTCTTC 521 ** * * * * * ****** * * **** * * consensus_3597#0 TAACAAA---AAATGATGAGCTGATCCATTGA 806 consensus_3597#1 TGGTGTATATAAAATACAACCTGA-------- 545 * * *** * * **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||