cluster # 3599

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Anopheles gambiae
cluster # 3599 cluster # 3599 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3599#0 length = 685 sequences # 2

consensus_3599#1 length = 365 sequences # 1

consensusID : consensus_3599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence

                              [GATCGCCCGAGGTTTACGATACACAGCTTAGCAATATAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACTATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAACGGAGCTGGCAAATTGAGCTAACAAGAAAGATGAGAAAGAGAACACAATACAGAGTCAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGCACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATAGGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAGCAGCAGAGAGAGAGAGAAGAAAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATGAAACAAGAGAGAAGAAAANACAAATACACATATTGAAAAACAAAATAANCACAAACACAAANAA]

[+] EMBL AL930449             [GATCGCCCGAGGTTTACGATACACAGCTTAGCAATATAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACTATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAACGGAGCTGGCAAATTGAGCTAACAAGAAAGATGAGAAAGAGAACACAATACAGAGTCAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGCACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATAGGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAGCAGCAGAGAGAGAGAGAAGAAAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATGAAACAAGAGAGAAGAAAANACAAATACACATATTGAAAAACAAAATAANCACAAACACAAANAA]
[-] EMBL AGA284308            [                                                                                                                                                                                                                                                                                                                                   AACGGAGCTGG AAATTGAGCTAA AAGAAAGATGAGAAAGAGAACACAATACAGAGTCAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGCACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATAGGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAG AG AGAGAGAGAGAGAAGAAAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATGAAACAAGAGAGAAGAAAA AAAAATACACATATTGAAAAACAA                     ]




>consensus_3599#0
GATCGCCCGAGGTTTACGATACACAGCTTAGCAATATAAAAGAAAACACACACACACATA
CAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATGATCGATTTAAATGCAAAAT
GATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGG
TACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTC
GCTCCTACTATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACC
ACTTCCAAGGAAGAAGAAAAAACAACGGAGCTGGCAAATTGAGCTAACAAGAAAGATGAG
AAAGAGAACACAATACAGAGTCAACATACAAACACACAGATAAAATGATAAACAAAAAAC
AAAACACAAACACACTTATGCACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTT
GTCCAGCAGGTTCGGGTGATAGGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGA
GCAGCAGAGAGAGAGAGAAGAAAATAACAGCCACAACCACAGACACACAACACACTAATA
AATGAATTGAACATAATAATGAAACAAGAGAGAAGAAAANACAAATACACATATTGAAAA
ACAAAATAANCACAAACACAAANAA

consensusID : consensus_3599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [ACCTTCCCTACCAAACCCCCACTGCTCCCCATTTACCCATTAGAACTTAACGATACACAGCTTAGCAAATTATTAAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATTGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACGATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAAC]

[+] EMBL AGA285611            [ACCTTCCCTACCAAACCCCCACTGCTCCCCATTTACCCATTAGAACTTAACGATACACAGCTTAGCAAATTATTAAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATTGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACGATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAAC]




>consensus_3599#1
ACCTTCCCTACCAAACCCCCACTGCTCCCCATTTACCCATTAGAACTTAACGATACACAG
CTTAGCAAATTATTAAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAG
TAAACTCATCCAAACTATTGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAA
ATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAAC
TTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACGATCTCTGTCTCT
CTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAA
ACAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3599#0      ----------------------------------GATCGCCCGAGGTTTACGATACACAG 26
consensus_3599#1      ACCTTCCCTACCAAACCCCCACTGCTCCCCATTTACCCATTAGAACTTAACGATACACAG 60
                                                           *    **  ** ***********

consensus_3599#0      CTTAGCAA--TAT--AAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAG 82
consensus_3599#1      CTTAGCAAATTATTAAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAG 120
                      ********  ***  *********************************************

consensus_3599#0      TAAACTCATCCAAACTAT-GATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAA 141
consensus_3599#1      TAAACTCATCCAAACTATTGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAA 180
                      ****************** *****************************************

consensus_3599#0      ATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAAC 201
consensus_3599#1      ATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAAC 240
                      ************************************************************

consensus_3599#0      TTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACTATCTCTGTCTCT 261
consensus_3599#1      TTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACGATCTCTGTCTCT 300
                      *********************************************** ************

consensus_3599#0      CTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAA 321
consensus_3599#1      CTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAA 360
                      ************************************************************

consensus_3599#0      ACAACGGAGCTGGCAAATTGAGCTAACAAGAAAGATGAGAAAGAGAACACAATACAGAGT 381
consensus_3599#1      ACAAC------------------------------------------------------- 365
                      *****                                                       

consensus_3599#0      CAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGC 441
consensus_3599#1      ------------------------------------------------------------
                                                                                  

consensus_3599#0      ACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATA 501
consensus_3599#1      ------------------------------------------------------------
                                                                                  

consensus_3599#0      GGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAGCAGCAGAGAGAGAGAGAAGA 561
consensus_3599#1      ------------------------------------------------------------
                                                                                  

consensus_3599#0      AAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATG 621
consensus_3599#1      ------------------------------------------------------------
                                                                                  

consensus_3599#0      AAACAAGAGAGAAGAAAANACAAATACACATATTGAAAAACAAAATAANCACAAACACAA 681
consensus_3599#1      ------------------------------------------------------------
                                                                                  

consensus_3599#0      ANAA 685
consensus_3599#1      ----