These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence [CCGCCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTCTATGTGTGTGAGTGTCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGGTAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAAAATTTCATCCCCCCACCCCACACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGATAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTGA--GTGTGTGTGTTCATGTGCTTGTCTCGTGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGCAGCTTAGTAGCAGCAGCAGCAGCAACAGCAGTAGCAACGCTTCCGCACACCTACTTTACACCGATAGCAACAACGCGAAGACTGCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGGATAAACGAACGGGCATGAAAATTGGATTACTCTGCGTGCTGCTTGGAGTGTGTTCGGCGGTGAAAATCATCAACCTGAAAGTTCCCTCCACCTACCTGCTGGATCAGACGTCCAAAACGCCAGACCCGCTAATACTGGACTGCGAGTACGAGGTGGACGAAAGCGAGAAGGGATTCGTGTTAAAATGGCTCCTGGACGGTCAACCGGGTCTACCAGTGGATACCGTCGAAAAATCCATTCCCCTTCCAATCTTTTAAGAACCGTGTCGACACCAGCTACGTTCGTGTCG] [+] EMBL BM614828 [CCGCCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTCTATGTGTGTGAGTGTCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGGTAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAAAATTTCATCCCCCCACCCCACACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGATAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTGA GTGTGTGTGTTCATGTGCTTGTCTCGTGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGCAGCTTAGTAGCAGCAGCAGCAGCAACAGCAGTAGCAACGCTTCCGCACACCTACTTTACACCGATAGCAACAACGCGAAGACTGCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGGATAAACGAACGGGCATGAAAATTGGATTACTCTGCGTGCTGCTTGG ] [+] EMBL BM626457 [ ccgCCCCACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTGAGTGTGTGTGTGTTCATGTGCTTGTCTCGTGTTTT TTCTCCCCACTTTCCACCATCTCGTGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGCAGCTTAGTAGCAGCAGCAGCAGCAGCAGCA A CAACGCTTCCGCACACCTACTTTACACCGATAGCAACAACGCGAAGACTCCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGGATAAACGAACGGGCATGAAAATTGGATTACTCT CTTGCTGCTTGGAGTGTGTTCGGCGGTGAAAATCATCAACCTGAAAGTTCCCTCCACCTACCTGCTGGATCAGACGTCCAAAACGCCAGACCCGCTAATACTGGACTGCGAGTACGAGGTGGACGAAAGCGAGAAGGGATTCGTGTTAAAATGGCTCCTGGACGGTCAACCGGGTCTACCAGTGGATACCGTCGAAAAATCCATTCCCCTTCCAATCTTTTAAGAACCGTGTCGACACCAGCTACGTTCGTGTCG] consensusID : consensus_3601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGGACGGTTCGAAACTACCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTGCGTCTATGTGTGTGAGTGTGTGAGTGTTTTTAGCAAACGAATCCTTCTTCCAAGCGTGAAAGCGAGCGTTTCTTGTCAAAGTGCGACATATTTCCCAAAAGCAATTGCAAATAAAATGTGAAACCAAGTTGGTTGGTCGCGATCGATCGGCGAATCCGGTTCCGGAAGTGTTGTAAAGTAACTGTGGCAAGTGGCAGATAAAGCAAAGTGCAAGTAAAGCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGATAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAGAATTACCTCCCTCCAATCTCCCCACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCTAAAGGGAAATGTTGCAGGAGTGAATGTGTGTGTGTTCATGTGCTTGTCTCGGGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAG] [+] EMBL BM581743 [CCGGACGGTTCGAAACTACCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTGCGTCTATGTGTGTGAGTGTGTGAGTGTTTTTAGCAAACGAATCCTTCTTCCAAGCGTGAAAGCGAGCGTTTCTTGTCAAAGTGCGACATATTTCCCAAAAGCAATTGCAAATAAAATGTGAAACCAAGTTGGTTGGTCGCGATCGATCGGCGAATCCGGTTCCGGAAGTGTTGTAAAGTAACTGTGGCAAGTGGCAGATAAAGCAAAGTGCAAGTAAAGCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGATAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAGAATTACCTCCCTCCAATCTCCCCACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCTAAAGGGAAATGTTGCAGGAGTGAATGTGTGTGTGTTCATGTGCTTGTCTCGGGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3601#0 ------------------------------------------------------------ consensus_3601#1 CCGGACGGTTCGAAACTACCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTC 60 consensus_3601#0 ------------------------------------------------------------ consensus_3601#1 ACCTTTCGCTGTTTTGGGTGCACTGGGTGCGTCTATGTGTGTGAGTGTGTGAGTGTTTTT 120 consensus_3601#0 ------------------------------------------------------------ consensus_3601#1 AGCAAACGAATCCTTCTTCCAAGCGTGAAAGCGAGCGTTTCTTGTCAAAGTGCGACATAT 180 consensus_3601#0 ------------------------------------------CCGCCGCCATCGTTTGTC 18 consensus_3601#1 TTCCCAAAAGCAATTGCAAATAAAATGTGAAACCAAGTTGGTTGGTCGCGATCGATCG-- 238 * *** **** * * consensus_3601#0 GCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTCTATG 78 consensus_3601#1 GCGAATCCG-GTTCCGGAAGTGTTGTAAAGTAACTGTGGCAAGTGGCAGATAAAGCAAAG 297 *** * ** **** ****** * * * ** * * * * * * consensus_3601#0 TGTGTGAGTGTCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGGTAAA 138 consensus_3601#1 TGCAAGTAAAGCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGATAAA 357 ** * ******************************************** **** consensus_3601#0 ATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGG 198 consensus_3601#1 ATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGG 417 ************************************************************ consensus_3601#0 TGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTT 258 consensus_3601#1 TGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTT 477 ************************************************************ consensus_3601#0 TGCTTGTAAAATTTCATCCCCCCA--CCCCACACCATCTTTAAAATTTTCCCGCAAGGGA 316 consensus_3601#1 TGCTTGTAGAATTACCTCCCTCCAATCTCCCCACCATCTTTAAAATTTTCCCGCAAGGGA 537 ******** **** * **** *** * ** ***************************** consensus_3601#0 AAAGGCGGCGATAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTG 376 consensus_3601#1 AAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCTAAA--GGGAAATGTTGCAGGAGTG 595 *********** *********************** * * ***** ************* consensus_3601#0 A--GTGTGTGTGTTCATGTGCTTGTCTCGTGTTTTCTTCTCCCCACTTTCCACCATCTCG 434 consensus_3601#1 AATGTGTGTGTGTTCATGTGCTTGTCTCGGGTTTTCTTCTCCCCACTTTCCACCATCTCG 655 * ************************** ****************************** consensus_3601#0 TGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGC 494 consensus_3601#1 TGAAG------------------------------------------------------- 660 ***** consensus_3601#0 AGCTTAGTAGCAGCAGCAGCAGCAACAGCAGTAGCAACGCTTCCGCACACCTACTTTACA 554 consensus_3601#1 ------------------------------------------------------------ consensus_3601#0 CCGATAGCAACAACGCGAAGACTGCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGG 614 consensus_3601#1 ------------------------------------------------------------ consensus_3601#0 ATAAACGAACGGGCATGAAAATTGGATTACTCTGCGTGCTGCTTGGAGTGTGTTCGGCGG 674 consensus_3601#1 ------------------------------------------------------------ consensus_3601#0 TGAAAATCATCAACCTGAAAGTTCCCTCCACCTACCTGCTGGATCAGACGTCCAAAACGC 734 consensus_3601#1 ------------------------------------------------------------ consensus_3601#0 CAGACCCGCTAATACTGGACTGCGAGTACGAGGTGGACGAAAGCGAGAAGGGATTCGTGT 794 consensus_3601#1 ------------------------------------------------------------ consensus_3601#0 TAAAATGGCTCCTGGACGGTCAACCGGGTCTACCAGTGGATACCGTCGAAAAATCCATTC 854 consensus_3601#1 ------------------------------------------------------------ consensus_3601#0 CCCTTCCAATCTTTTAAGAACCGTGTCGACACCAGCTACGTTCGTGTCG 903 consensus_3601#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||