These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CCGATTTGCGGGCGCTAAACAGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGAT] [+] EMBL BM581877 [CCGATTTGCGGGCGCTAAACAGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGAT] consensusID : consensus_3636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGATAAGTAATGG] [+] EMBL BM631239 [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGATAAGTAATGG] consensusID : consensus_3636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [GAAAAAGCGGAATTCCTCGAGCACTGTTGGCCCACTGGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGGACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATTATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGGACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGA] [-] EMBL CNS08V9S [GAAAAAGCGGAATTCCTCGAGCACTGTTGGCCCACTGGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGGACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATTATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGGACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3636#0 ---------------CCGATTTGCGGGCGCTAAACAGAA-TTTCGATTTCGTAAACAAAC 44 consensus_3636#1 -----------------------CCGCCCACGCGTCCGC-CCACGCGTCCG--AACAAAC 34 consensus_3636#2 GAAAAAGCGGAATTCCTCGAGCACTGTTGGCCCACTGGAATTTCGATTTCGTAAACAAAC 60 * * ** * ** ******* consensus_3636#0 TCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCC 104 consensus_3636#1 TCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCC 94 consensus_3636#2 TCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCC 120 ************************************************************ consensus_3636#0 AGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGC 164 consensus_3636#1 AGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGC 154 consensus_3636#2 AGAGGACACAGCGGACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATTATGGGC 180 ************* *************************************** ****** consensus_3636#0 GAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGG 224 consensus_3636#1 GAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGG 214 consensus_3636#2 GAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGG 240 ************************************************************ consensus_3636#0 TGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGG 284 consensus_3636#1 TGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGG 274 consensus_3636#2 TGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGG 300 ************************************************************ consensus_3636#0 TGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAG 344 consensus_3636#1 TGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAG 334 consensus_3636#2 TGCAATATTTGGCCAACTTTTTGCTGCAGGACAAGAACCGCGTCGAGGAAAGCAACGGAG 360 ***************************** ****************************** consensus_3636#0 CCAGTACGGAAGATACACAATAAATAGCATGCGAT--------- 379 consensus_3636#1 CCAGTACGGAAGATACACAATAAATAGCATGCGATAAGTAATGG 378 consensus_3636#2 CCAGTACGGAAGA------------------------------- 373 ************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||