cluster # 3647

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Anopheles gambiae
cluster # 3647 cluster # 3647 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3647#0 length = 733 sequences # 1

consensus_3647#1 length = 440 sequences # 1
consensus_3647#2 length = 285 sequences # 1

consensusID : consensus_3647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence

                              [GGTTTCTATTGGCAACATTCCCTTTCCCATCTCGTGGATNGCGGGATGTGGCAAACACTCTGATCTGTCAGCAAACAGTTTGACGCTGGCTGCTGCTCCCCCTCCCCCCCACCAAAAGACGTCTCAGAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAAAACTGAAAGCGAGGAAGTAGGAGGAAACGTTTATGGTGGTTAGCCAACTCTGCCTGNTACTCTAGCTCGCACTCCGCTTTCACACCGTTANAACACTTGCCACACATGAGGTAAAACNTCATCATTCCTTCATGTCCTTGTACGTATAACTTNCGGCGCAGCATACGAGGGGACATGCTGTAAAGAGGGGTAGTGGTGGCGATCGNCGATGGTGATCGATCAACCAACTACCTGNTNGACGCAGAATCAGNACGACTATCTAGGAACCGTTNAAACGTATATTGTACTAGGCGCGTTAAATGATGCGGGTGAAAGCCAGCTAAAAAGCGGTGCAACTTCCTTTCCGCCTGCAAACACAAGGCCGNCGCCNACCCAGCTTNACAACCCGATCTCCTGAGATCATACCCGAANCGCAGAGTCGCGCNGCTGCANCTTAAAGGCCCCCGGGGATCGACGNCCACTANTNCTGGTACAGTGCAAANTACCAGATNCAACACCCGCTGACACGNTACACGCGNGGCAGCAGCTGTCGAACTGGGCCGCCCACTGCACTATT]

[+] EMBL AL694950             [GGTTTCTATTGGCAACATTCCCTTTCCCATCTCGTGGATNGCGGGATGTGGCAAACACTCTGATCTGTCAGCAAACAGTTTGACGCTGGCTGCTGCTCCCCCTCCCCCCCACCAAAAGACGTCTCAGAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAAAACTGAAAGCGAGGAAGTAGGAGGAAACGTTTATGGTGGTTAGCCAACTCTGCCTGNTACTCTAGCTCGCACTCCGCTTTCACACCGTTANAACACTTGCCACACATGAGGTAAAACNTCATCATTCCTTCATGTCCTTGTACGTATAACTTNCGGCGCAGCATACGAGGGGACATGCTGTAAAGAGGGGTAGTGGTGGCGATCGNCGATGGTGATCGATCAACCAACTACCTGNTNGACGCAGAATCAGNACGACTATCTAGGAACCGTTNAAACGTATATTGTACTAGGCGCGTTAAATGATGCGGGTGAAAGCCAGCTAAAAAGCGGTGCAACTTCCTTTCCGCCTGCAAACACAAGGCCGNCGCCNACCCAGCTTNACAACCCGATCTCCTGAGATCATACCCGAANCGCAGAGTCGCGCNGCTGCANCTTAAAGGCCCCCGGGGATCGACGNCCACTANTNCTGGTACAGTGCAAANTACCAGATNCAACACCCGCTGACACGNTACACGCGNGGCAGCAGCTGTCGAACTGGGCCGCCCACTGCACTATT]




>consensus_3647#0
GGTTTCTATTGGCAACATTCCCTTTCCCATCTCGTGGATNGCGGGATGTGGCAAACACTC
TGATCTGTCAGCAAACAGTTTGACGCTGGCTGCTGCTCCCCCTCCCCCCCACCAAAAGAC
GTCTCAGAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAAAAC
TGAAAGCGAGGAAGTAGGAGGAAACGTTTATGGTGGTTAGCCAACTCTGCCTGNTACTCT
AGCTCGCACTCCGCTTTCACACCGTTANAACACTTGCCACACATGAGGTAAAACNTCATC
ATTCCTTCATGTCCTTGTACGTATAACTTNCGGCGCAGCATACGAGGGGACATGCTGTAA
AGAGGGGTAGTGGTGGCGATCGNCGATGGTGATCGATCAACCAACTACCTGNTNGACGCA
GAATCAGNACGACTATCTAGGAACCGTTNAAACGTATATTGTACTAGGCGCGTTAAATGA
TGCGGGTGAAAGCCAGCTAAAAAGCGGTGCAACTTCCTTTCCGCCTGCAAACACAAGGCC
GNCGCCNACCCAGCTTNACAACCCGATCTCCTGAGATCATACCCGAANCGCAGAGTCGCG
CNGCTGCANCTTAAAGGCCCCCGGGGATCGACGNCCACTANTNCTGGTACAGTGCAAANT
ACCAGATNCAACACCCGCTGACACGNTACACGCGNGGCAGCAGCTGTCGAACTGGGCCGC
CCACTGCACTATT

consensusID : consensus_3647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [CCGGAAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGTCTAACAATGGCTGCGCGCCCAACCCCCCCCCCCCCCCCCACCAAAAGACGTCTCAGAGTCGCAAACAATAGACATATACTTTTAGTAAATACGAAATGCCAGCAAAAACTGAAAGCGAGAAAGGAGAAGGAAACGTTTTTGGTGGTTAACCAACTCTGCTACTCTAGCTCGCACTCCGCTTTCACACCGTTAAACACTTGCCACACATGAGGTAAAAATCATCATTCCTTTATGTCCTTGTCGTTATTTTGGCGCAGCATAAGGGGGGACATGCTGCAAGAGGGGTGTGGTGGCGATCGGCGATGGTGATCGATCAACAACTACTGCTTGAGAGAATC]

[+] EMBL BM626673             [CCGGAAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGTCTAACAATGGCTGCGCGCCCAACCCCCCCCCCCCCCCCCACCAAAAGACGTCTCAGAGTCGCAAACAATAGACATATACTTTTAGTAAATACGAAATGCCAGCAAAAACTGAAAGCGAGAAAGGAGAAGGAAACGTTTTTGGTGGTTAACCAACTCTGCTACTCTAGCTCGCACTCCGCTTTCACACCGTTAAACACTTGCCACACATGAGGTAAAAATCATCATTCCTTTATGTCCTTGTCGTTATTTTGGCGCAGCATAAGGGGGGACATGCTGCAAGAGGGGTGTGGTGGCGATCGGCGATGGTGATCGATCAACAACTACTGCTTGAGAGAATC]




>consensus_3647#1
CCGGAAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGG
ATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGTCTAACAATGGCTGCGCGC
CCAACCCCCCCCCCCCCCCCCACCAAAAGACGTCTCAGAGTCGCAAACAATAGACATATA
CTTTTAGTAAATACGAAATGCCAGCAAAAACTGAAAGCGAGAAAGGAGAAGGAAACGTTT
TTGGTGGTTAACCAACTCTGCTACTCTAGCTCGCACTCCGCTTTCACACCGTTAAACACT
TGCCACACATGAGGTAAAAATCATCATTCCTTTATGTCCTTGTCGTTATTTTGGCGCAGC
ATAAGGGGGGACATGCTGCAAGAGGGGTGTGGTGGCGATCGGCGATGGTGATCGATCAAC
AACTACTGCTTGAGAGAATC

consensusID : consensus_3647#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [ATGGTACGAAAGAACGGCGATCGCAGCACTTGTGCAGCAAAGGAGAAACAGATCATTTCTTCTCATTTACACTGGAAGAAAAACAGCGCATGGGAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGCTTAACACTGGCTGCGCTTCCACCCCCCACCAAAAGACGTCGCACAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAA]

[+] EMBL AGA285851            [ATGGTACGAAAGAACGGCGATCGCAGCACTTGTGCAGCAAAGGAGAAACAGATCATTTCTTCTCATTTACACTGGAAGAAAAACAGCGCATGGGAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGCTTAACACTGGCTGCGCTTCCACCCCCCACCAAAAGACGTCGCACAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAA]




>consensus_3647#2
ATGGTACGAAAGAACGGCGATCGCAGCACTTGTGCAGCAAAGGAGAAACAGATCATTTCT
TCTCATTTACACTGGAAGAAAAACAGCGCATGGGAGAAGCGCATTGCCATTTGTGTTCTA
TCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGT
CAGCAAACAGCTTAACACTGGCTGCGCTTCCACCCCCCACCAAAAGACGTCGCACAGTTG
CAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3647#0      ------------------------------------------------------------
consensus_3647#1      ------------------------------------------------------------
consensus_3647#2      ATGGTACGAAAGAACGGCGATCGCAGCACTTGTGCAGCAAAGGAGAAACAGATCATTTCT 60
                                                                                  

consensus_3647#0      ----------------------------------------------------GGTTTCTA 8
consensus_3647#1      -----------------------------CCGGAAGAAGCGCATTGCCATTTGTGTTCTA 31
consensus_3647#2      TCTCATTTACACTGGAAGAAAAACAGCGCATGGGAGAAGCGCATTGCCATTTGTGTTCTA 120
                                                                          *  *****

consensus_3647#0      TTGGCAA-CATTCCCTTTCCCATCTCGTGGATNGCGGGATGTGGCAAACACTCTGATCTG 67
consensus_3647#1      TCGGCAAACATTCCCTTTCCCATCTCG-GGATGGCGGGATGTGGCAAACACTCTGATCCG 90
consensus_3647#2      TCGGCAAACATTCCCTTTCCCATCTCG-GGATGGCGGGATGTGGCAAACACTCTGATCCG 179
                      * ***** ******************* **** ************************* *

consensus_3647#0      TCAGCAAACAGTTTGACGCTGGCTGC--------TGCTCCCCCTCCCCCCCACCAAAAGA 119
consensus_3647#1      TCAGCAAACAGTCTAACAATGGCTGCGCGCCCAACCCCCCCCCCCCCCCCCACCAAAAGA 150
consensus_3647#2      TCAGCAAACAGCTTAACACTGGCTGCG------------CTTCCACCCCCCACCAAAAGA 227
                      ***********  * **  *******             *  *  ***************

consensus_3647#0      CGTCTCAGAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAAAA 179
consensus_3647#1      CGTCTCAGAGTCGCAAACAATAGACATATACTTTTAGTAAATACGAAATGCCAGCAAAAA 210
consensus_3647#2      CGTCGCACAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAA-- 285
                      **** ** *** *****************************  ********** * **  

consensus_3647#0      CTGAAAGCGAGGAAGTAGGAGGAAACGTTTATGGTGGTTAGCCAACTCTGCCTGNTACTC 239
consensus_3647#1      CTGAAAGCGAGAAAGGAGAAGGAAACGTTTTTGGTGGTTAACCAACTCTG----CTACTC 266
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      TAGCTCGCACTCCGCTTTCACACCGTTANAACACTTGCCACACATGAGGTAAAACNTCAT 299
consensus_3647#1      TAGCTCGCACTCCGCTTTCACACCGTTAAA-CACTTGCCACACATGAGGTAAAA-ATCAT 324
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      CATTCCTTCATGTCCTTGTACGTATAACTTNCGGCGCAGCATACGAGGGGACATGCTGTA 359
consensus_3647#1      CATTCCTTTATGTCCTTGTCGTTAT----TTTGGCGCAGCATAAGGGGGGACATGCTGCA 380
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      AAGAGGGGTAGTGGTGGCGATCGNCGATGGTGATCGATCAACCAACTACCTGNTNGACGC 419
consensus_3647#1      A-GAGGGGT-GTGGTGGCGATCGGCGATGGTGATCGATCAAC-AACTAC-TGCTTGAG-- 434
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      AGAATCAGNACGACTATCTAGGAACCGTTNAAACGTATATTGTACTAGGCGCGTTAAATG 479
consensus_3647#1      AGAATC------------------------------------------------------ 440
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      ATGCGGGTGAAAGCCAGCTAAAAAGCGGTGCAACTTCCTTTCCGCCTGCAAACACAAGGC 539
consensus_3647#1      ------------------------------------------------------------
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      CGNCGCCNACCCAGCTTNACAACCCGATCTCCTGAGATCATACCCGAANCGCAGAGTCGC 599
consensus_3647#1      ------------------------------------------------------------
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      GCNGCTGCANCTTAAAGGCCCCCGGGGATCGACGNCCACTANTNCTGGTACAGTGCAAAN 659
consensus_3647#1      ------------------------------------------------------------
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      TACCAGATNCAACACCCGCTGACACGNTACACGCGNGGCAGCAGCTGTCGAACTGGGCCG 719
consensus_3647#1      ------------------------------------------------------------
consensus_3647#2      ------------------------------------------------------------
                                                                                  

consensus_3647#0      CCCACTGCACTATT 733
consensus_3647#1      --------------
consensus_3647#2      --------------