cluster # 3648

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Anopheles gambiae
cluster # 3648 cluster # 3648 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3648#0 length = 618 sequences # 1

consensus_3648#1 length = 492 sequences # 2

consensusID : consensus_3648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CTGGTCGTGTTCAAGTCGGCGCCGATCCTGAAGCGCACGCTCAAGGTGCGCCACGCGCTGATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAAACCAAGTACCTGGGCCGGCAGTGGCGCAAGTCGAACATGAAGACGATCAGCGCGATCTACGCGAAGGTGCGCCACCGGTTGAACGACGACTGGGCGTTCGGGAACGATCTGGACGCGCGCCCCTGGGACTTCCAGGCGGACGAGTGCGCCTTGAAGAGTGGGGTGGATCGGTTTAACAACCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCCCCCCCCTCCCCACCACCCAGTATATGTGTATGTCCTCCCCTCCCTGCATTCTCAACAT]

[+] EMBL BX627034             [CTGGTCGTGTTCAAGTCGGCGCCGATCCTGAAGCGCACGCTCAAGGTGCGCCACGCGCTGATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAAACCAAGTACCTGGGCCGGCAGTGGCGCAAGTCGAACATGAAGACGATCAGCGCGATCTACGCGAAGGTGCGCCACCGGTTGAACGACGACTGGGCGTTCGGGAACGATCTGGACGCGCGCCCCTGGGACTTCCAGGCGGACGAGTGCGCCTTGAAGAGTGGGGTGGATCGGTTTAACAACCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCCCCCCCCTCCCCACCACCCAGTATATGTGTATGTCCTCCCCTCCCTGCATTCTCAACAT]




>consensus_3648#0
CTGGTCGTGTTCAAGTCGGCGCCGATCCTGAAGCGCACGCTCAAGGTGCGCCACGCGCTG
ATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAAACCAAGTACCTGGGCCGGCAGTGG
CGCAAGTCGAACATGAAGACGATCAGCGCGATCTACGCGAAGGTGCGCCACCGGTTGAAC
GACGACTGGGCGTTCGGGAACGATCTGGACGCGCGCCCCTGGGACTTCCAGGCGGACGAG
TGCGCCTTGAAGAGTGGGGTGGATCGGTTTAACAACCGGCGCAGCACTCGGCTGCGTCAA
TGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGG
CAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTT
TAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGA
CGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTG
TGTGTGTGTAAGAACTCCCCCCCCCCTCCCCACCACCCAGTATATGTGTATGTCCTCCCC
TCCCTGCATTCTCAACAT

consensusID : consensus_3648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 492
fasta sequence

                              [TTGGGTGAATCGGTTTAACAACCGGCGCTACCTGCAGTGAACAACGGCATACTGGCCGGCATCGAGGGCCTGGACTATGACGATCCGATCGAGGGGATCGGTGGTATTGGTGGGGAAGGCGGTGGGTT-GGCGTTGGCGCCGGACTGGGCGGTGGTGGCGTCGGTGGCGACGGGTTGAACGGGGGCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGT-GGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATT-GGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCGGACGCGTGGGCGGACGCGTGGGCGG]

[-] EMBL AGA285856            [TTGGGTGAATCGGTTTAACAACCGGCGCTACCTGCAGTGAACAACGGCATACTGGCCGGCATCGAGGGCCTGGACTATGACGATCCGATCGAGGGGATCGGTGGTATTGGTGGGGAAGGCGGTGGGTT GGCGTTGGCGCCGGACTGGGCGGTGGTGGCGTCGGTGGCGACGGGTTGAACGGGGGCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGT GGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATT GGACGCT                                                                                                     ]
[-] EMBL BM627189             [                                                                                                    GTGGTATTGGTGGGGGAGGCGGTGGGTTGGGCGTTGGCGCCGGACTGGGCGGTGGTGGCGTCGGTGGCGACGGGTTGAACGGGGGCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCGGACGCGTGGGCGGACGCGTGGGCGG]




>consensus_3648#1
TTGGGTGAATCGGTTTAACAACCGGCGCTACCTGCAGTGAACAACGGCATACTGGCCGGC
ATCGAGGGCCTGGACTATGACGATCCGATCGAGGGGATCGGTGGTATTGGTGGGGAAGGC
GGTGGGTTGGCGTTGGCGCCGGACTGGGCGGTGGTGGCGTCGGTGGCGACGGGTTGAACG
GGGGCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTG
GTGGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAAC
CGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGG
AAGTGTACAATAACAACATCGATTGGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGAC
GAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCGGACGCGTGGGCGG
ACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3648#0      CTGGTCGTGTTCAAGTCGGCGCCGATCCTGAAGCGCACGCTCAAGGTGCGCCACGCGCTG 60
consensus_3648#1      -----------------------------------------------------TTGGGTG 7
                                                                              * **

consensus_3648#0      ATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAAACCAAGTACCTGGGCCGGCAGTGG 120
consensus_3648#1      AATCGGTTTAACA-ACCGGCGCTACCTGCAGTGAACAACG-GCATACTGGCCGGCATCG- 64
                      *  * * *  **   * *  *** *      ** * * *  * *    ********  * 

consensus_3648#0      CGCAAGTCGAACATGAAGACGATCAGCGCGATCTACGCGAAGGTGCGCCACCGGTTGAAC 180
consensus_3648#1      ---AGGGCCTGGACTATGACGATC----CGATCGAGGGGATCG-GTGGTATTGGTGGG-- 114
                         * * *    *  * *******    ***** * * **  * * *  *  *** *   

consensus_3648#0      GACGACTGGGCGTTCGGGAACGATCTGGACGCGCGCCCCTGGGACTTCCAGGCGGACGAG 240
consensus_3648#1      GAAGGCGGTGGGTT-------------GGCGTTGGCGCC--GGACT---GGGCGGTGGTG 156
                      ** * * * * ***             * **   ** **  *****    *****  * *

consensus_3648#0      TGCGCCTTGAAGAGTGGGGTGGATCGGTTTAACAACCGGCGCAGCACTCGGCTGCGTCAA 300
consensus_3648#1      -GCGTCGGTGGCGACGGGTTGAACGGG-------GGCGGCGCAGCACTCGGCTGCGTCAA 208
                       *** *         *** ** *  **         ************************

consensus_3648#0      TGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGG 360
consensus_3648#1      TGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGG 268
                      ************************************************************

consensus_3648#0      CAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTT 420
consensus_3648#1      CAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTT 328
                      ************************************************************

consensus_3648#0      TAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGA 480
consensus_3648#1      TAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGG-A 387
                      ********************************************************** *

consensus_3648#0      CGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTG 540
consensus_3648#1      CGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTG 447
                      ************************************************************

consensus_3648#0      TGTGTGTGTAAGAACTCCCCCCCCCCTCCCCACCACCCAGTATATGTGTATGTCCTCCCC 600
consensus_3648#1      TGTGTGTGTAAGAACTCCCGGACGCGTGG--GCGGACGCGTGGGCGG------------- 492
                      *******************   * * *     *   *  **    *              

consensus_3648#0      TCCCTGCATTCTCAACAT 618
consensus_3648#1      ------------------