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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 938 fasta sequence
[TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTTGCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGAGACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATCCGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGTATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCNTGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAAACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCTTAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAACCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACAGAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGAGGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGACATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCAACTTGCCAACAAAANTACNNACACCNGACAACCCCCCGACAGGTNCCATAACCAGGACACACTTTGCGACATATNCNGGCGCATAACCNGNNGACNGN]
[+] EMBL AL692230 [TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTTGCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGAGACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATCCGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGTATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCNTGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAAACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCTTAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAACCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACAGAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGAGGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGACATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCAACTTGCCAACAAAANTACNNACACCNGACAACCCCCCGACAGGTNCCATAACCAGGACACACTTTGCGACATATNCNGGCGCATAACCNGNNGACNGN]
consensusID : consensus_3667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence
[TGCGATGATATGAAGCATTAAAGAGAAAACAAGGCCGAACGTGAAACGTTGAACCAGACAAACAAACAAACAAATACCAACTCTATATATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAACAAACAACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAAACAATATTTTTAAATTAATTGCTAACAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCTCCCGTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT]
[+] EMBL BX610562 [TGCGATGATATGAAGCATTAAAGAGAAAACAAGGCCGAACGTGAAACGTTGAACCAGACAAACAAACAAACAAATACCAACTCTATATATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAACAAACAACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAAACAATATTTTTAAATTAATTGCTAACAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCTCCCGTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT]
[+] EMBL BX617841 [ GTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGTGACAGGTAAAGGTGATTGGCTCTGCTGAAAAGGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAGGTATGCAATCCGCACGACACACTTATCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3667#0 TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTT 60
consensus_3667#1 ------------------------------------------------------------
consensus_3667#0 GCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGA 120
consensus_3667#1 ------------------------------------------------------------
consensus_3667#0 GACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACA 180
consensus_3667#1 ---------------------------TGCGATGATATGAAGCATTAAAGAGAAAACAAG 33
** ** * * *** ****
consensus_3667#0 ACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAG 240
consensus_3667#1 GCCGAACGTGAAACGTTGAAC-CAG---ACAA-ACAAACAAACAAATACCAACTCTATAT 88
* *** * * *** *** **** * * ** * * * *
consensus_3667#0 AGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATC 300
consensus_3667#1 ATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAA 148
* * * *** ** * * * * * * * ** * **
consensus_3667#0 CGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGT 360
consensus_3667#1 CAAACA---ACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAA---ACAATATTTTT 202
* ** **** * * ** * * * * ** * * **** * *
consensus_3667#0 ATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCN 420
consensus_3667#1 AAATTAATTGCTAA--CAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCT 260
* **** ** ** * * * * * **** * **** **
consensus_3667#0 TGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAA 480
consensus_3667#1 CCCGTTAAGCAA-AAAGGTCAGATCTGCAATCAACATGCAATCA-ACAACAGTTTGTGTG 318
* ** *** * * * * * * * * * * * ****** ** *
consensus_3667#0 ACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCT 540
consensus_3667#1 ACACACGTGTTAACCTGA---AGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGT 375
** * * ** ** ** **** * * * * *
consensus_3667#0 TAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAA 600
consensus_3667#1 AAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAG 435
* * * * * * ** *** * * ** ** * ** * **
consensus_3667#0 CCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACA 660
consensus_3667#1 AACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCA 495
***** * * ** * ** * * ** ** * **
consensus_3667#0 GAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGA 720
consensus_3667#1 TGGATCGTGTTGCAAGTGTG-CAAGGGA---AAGAGGATCACAAAATAC--AATTGTAGA 549
* ** *** * * ** *** * * * * * * * *** ** * **
consensus_3667#0 GGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGA 780
consensus_3667#1 AACAGGCAGTATCGAGACTTTGAATT---GAACTCATTAACTTATGAGAAAAATGCTTGA 606
** * * * ** * ** * *** * * ** **
consensus_3667#0 CATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCA 840
consensus_3667#1 -ATTT----CTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGAT--CA 659
**** * ** ** ** * * ** * *** ** ** **
consensus_3667#0 ACTTGCCAACAAAANTACNNA-CACCNGACAACCCCCCGACAGGTNCCATAACCAGGACA 899
consensus_3667#1 TGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTC-ACA---ACGATATGCCTGCAA 715
** * * * * * * * * **** * *** * *** * * *
consensus_3667#0 CACTTTGCGACATATNCNGGC-GCATAACCNGNNGACNGN- 938
consensus_3667#1 TCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT 756
** * *** * * *** ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||