cluster # 3674

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Anopheles gambiae
cluster # 3674 cluster # 3674 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3674#0 length = 800 sequences # 2

consensus_3674#1 length = 514 sequences # 1

consensusID : consensus_3674#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 800
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCTTTCAAGCTACGTGTTTGAAAACATCTACCTACCGGCCGCCCAGTCCGGATCACAGAATTCGTTTAACACGATGGTCGATATTAAGCTGCGCCAGTGGGCCGAACAGGCACTGCCGGCCAAATCGGTCGAGGCGGGCTGGGAAGCGCTGCAGAAGGAGTTCCAGCATCTGATGGAGGTGGCGCGCCGTACGCCCGATCACGACGACCTGTACGACAACCTGAAGAGTGCCGTCATCGACGAAGCCATTCGGAGGCACTCGTGGGAGGACAAGGCGATCGATATGCTGCGCGTGATACAGCTGAACACGCTCGAGGACCGGAGCGTGCACGACAAGCAGGAGTGGGACCAGGCGGTGCGCTTTTTCGAAGCCTCGGTCAAGGATAAGCTGCAGGCGACCGAGACAACGATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCACTGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAAATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTGCGGAAAAATCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGGTATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGGAAAGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTGGTACTGTTCTGGCGCATCCA]

[+] EMBL BM603409             [CCGCCCACGCGTCCGCCCACGCGTCCGCTTTCAAGCTACGTGTTTGAAAACATCTACCTACCGGCCGCCCAGTCCGGATCACAGAATTCGTTTAACACGATGGTCGATATTAAGCTGCGCCAGTGGGCCGAACAGGCACTGCCGGCCAAATCGGTCGAGGCGGGCTGGGAAGCGCTGCAGAAGGAGTTCCAGCATCTGATGGAGGTGGCGCGCCGTACGCCCGATCACGACGACCTGTACGACAACCTGAAGAGTGCCGTCATCGACGAAGCCATTCGGAGGCACTCGTGGGAGGACAAGGCGATCGATATGCTGCGCGTGATACAGCTGAACACGCTCGAGGACCGGAGCGTGCACGACAAGCAGGAGTGGGACCAGGCGGTGCGCTTTTTCGAAGCCTCGGTCAAGGATAAGCTGCAGGCGACCGAGACAACGATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCACTGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTC                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM643168             [                                                                                                                                                                                                                                 ccgGACGACCTGTACGACAACCTGAAGAGTGCCGTCATCGACGAAGCCATTCGGAGGCACTCGTGGGAGGACAAGGCGATCGATATGCTGCGCGTGATACAGCTGAACACGCTCGAGGACCGGAGCGTGCACGACAAGCAGGAGTGGGATCAGGCGGTGCGCTTTTTCGAAGCCTCGGTCAAGGATAAGCTGCAGGCGACCGAGACAACGATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCACTGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAAATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTGCGGAAAAATCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGGTATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGGAAAGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTGGTACTGTTCTGGCGCATCCA]




>consensus_3674#0
CCGCCCACGCGTCCGCCCACGCGTCCGCTTTCAAGCTACGTGTTTGAAAACATCTACCTA
CCGGCCGCCCAGTCCGGATCACAGAATTCGTTTAACACGATGGTCGATATTAAGCTGCGC
CAGTGGGCCGAACAGGCACTGCCGGCCAAATCGGTCGAGGCGGGCTGGGAAGCGCTGCAG
AAGGAGTTCCAGCATCTGATGGAGGTGGCGCGCCGTACGCCCGATCACGACGACCTGTAC
GACAACCTGAAGAGTGCCGTCATCGACGAAGCCATTCGGAGGCACTCGTGGGAGGACAAG
GCGATCGATATGCTGCGCGTGATACAGCTGAACACGCTCGAGGACCGGAGCGTGCACGAC
AAGCAGGAGTGGGACCAGGCGGTGCGCTTTTTCGAAGCCTCGGTCAAGGATAAGCTGCAG
GCGACCGAGACAACGATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCAC
TGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAA
ATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTG
CGGAAAAATCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGG
TATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGG
AAAGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTG
GTACTGTTCTGGCGCATCCA

consensusID : consensus_3674#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [GAATCCCCCGAGGTTATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCACTGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAAATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTGCGGAAAAACCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGGTATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGGAAGGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTGGTACTGTTCTGGCGCATCCAGCAGGTCATCAAGGTGACGGCGAATGCGCTCCGCCAGCAGGTCATCAACCGGGAGGCGCGGCGTTTAGATAAGGAAATAAAGGAAGTGCTGGACGAGTACGGCGAGGATGACGAGAAGAAGCTGCAGCTGCTCA]

[+] EMBL AL692351             [GAATCCCCCGAGGTTATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCACTGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAAATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTGCGGAAAAACCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGGTATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGGAAGGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTGGTACTGTTCTGGCGCATCCAGCAGGTCATCAAGGTGACGGCGAATGCGCTCCGCCAGCAGGTCATCAACCGGGAGGCGCGGCGTTTAGATAAGGAAATAAAGGAAGTGCTGGACGAGTACGGCGAGGATGACGAGAAGAAGCTGCAGCTGCTCA]




>consensus_3674#1
GAATCCCCCGAGGTTATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCAC
TGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAA
ATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTG
CGGAAAAACCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGG
TATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGG
AAGGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTG
GTACTGTTCTGGCGCATCCAGCAGGTCATCAAGGTGACGGCGAATGCGCTCCGCCAGCAG
GTCATCAACCGGGAGGCGCGGCGTTTAGATAAGGAAATAAAGGAAGTGCTGGACGAGTAC
GGCGAGGATGACGAGAAGAAGCTGCAGCTGCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3674#0      CCGCCCACGCGTCCGCCCACGCGTCCGCTTTCAAGCTACGTGTTTGAAAACATCTACCTA 60
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      CCGGCCGCCCAGTCCGGATCACAGAATTCGTTTAACACGATGGTCGATATTAAGCTGCGC 120
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      CAGTGGGCCGAACAGGCACTGCCGGCCAAATCGGTCGAGGCGGGCTGGGAAGCGCTGCAG 180
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      AAGGAGTTCCAGCATCTGATGGAGGTGGCGCGCCGTACGCCCGATCACGACGACCTGTAC 240
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      GACAACCTGAAGAGTGCCGTCATCGACGAAGCCATTCGGAGGCACTCGTGGGAGGACAAG 300
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      GCGATCGATATGCTGCGCGTGATACAGCTGAACACGCTCGAGGACCGGAGCGTGCACGAC 360
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      AAGCAGGAGTGGGACCAGGCGGTGCGCTTTTTCGAAGCCTCGGTCAAGGATAAGCTGCAG 420
consensus_3674#1      ---------------------------------------------------------GAA 3
                                                                                * 

consensus_3674#0      GCGACCGAGACAACGATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCAC 480
consensus_3674#1      TCCCCCGAGGT---TATCGGCGAAATGTTTGGTCCCTCGACCAGCCAGAAGTGGCTGCAC 60
                       *  *****      *********************************************

consensus_3674#0      TGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAA 540
consensus_3674#1      TGGCGCTCGTCGACCGAGGAGCAGAACAAACGGCGGCAGGTCAAGTCCGAGCTGGACAAA 120
                      ************************************************************

consensus_3674#0      ATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTG 600
consensus_3674#1      ATACTCGACAGCGACTCGAAACATTCGCCCACGCTCAGCTACGACGAGCTGACGACGGTG 180
                      ************************************************************

consensus_3674#0      CGGAAAAATCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGG 660
consensus_3674#1      CGGAAAAACCTCCAGCGGGGCAACGTGGAGGTGGAGACGGACTACATCCGGGAGACGTGG 240
                      ******** ***************************************************

consensus_3674#0      TATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGG 720
consensus_3674#1      TATCCCATCTACAGGCGGCATTTCCTCAAGCAAGCGCTAAACCGTGCGTACGATTGCCGG 300
                      ************************************************************

consensus_3674#0      AAAGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTG 780
consensus_3674#1      AAGGCGTACTACCTGTACTCGCAGCAGGGCAGCGACTGTGAGGTGAACTGCAGCGACGTG 360
                      ** *********************************************************

consensus_3674#0      GTACTGTTCTGGCGCATCCA---------------------------------------- 800
consensus_3674#1      GTACTGTTCTGGCGCATCCAGCAGGTCATCAAGGTGACGGCGAATGCGCTCCGCCAGCAG 420
                      ********************                                        

consensus_3674#0      ------------------------------------------------------------
consensus_3674#1      GTCATCAACCGGGAGGCGCGGCGTTTAGATAAGGAAATAAAGGAAGTGCTGGACGAGTAC 480
                                                                                  

consensus_3674#0      ----------------------------------
consensus_3674#1      GGCGAGGATGACGAGAAGAAGCTGCAGCTGCTCA 514