cluster # 3675

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Anopheles gambiae
cluster # 3675 cluster # 3675 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3675#0 length = 619 sequences # 2

consensus_3675#1 length = 541 sequences # 1

consensusID : consensus_3675#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [AAACGGAAGACTAACGAACGTTTTCGAACGTTCGAGCAGTATACTGGCACGAACGATTTCCGGCCCATCGTCTGACACTGAACGCTTCTGTGCCTGCTATCGGATCGAAATCGAATGGGACGCCATTTTCGCACCGATCGGAGGCACAGAGTCGGAAGGGACGACAGGCTAGCCCGTGCGCAAGCAGACAGCAGGCGTTGCCTCAGTTTTGATAGGTATTCGAGTGAAACTTACCTGACATCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCATTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACATTCAACGCTCGCATGTAGAGAGCTGTGTGCAGGAGAGATAAAATGAAATGATAAAATTAGATTTACTGCAACTGTTTTTAATGAAACTTCATAATGTTTAACGATAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTAAGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTG]

[+] EMBL BX607929             [AAACGGAAGACTAACGAACGTTTTCGAACGTTCGAGCAGTATACTGGCACGAACGATTTCCGGCCCATCGTCTGACACTGAACGCTTCTGTGCCTGCTATCGGATCGAAATCGAATGGGACGCCATTTTCGCACCGATCGGAGGCACAGAGTCGGAAGGGACGACAGGCTAGCCCGTGCGCAAGCAGACAGCAGGCGTTGCCTCAGTTTTGATAGGTATTCGAGTGAAACTTACCTGACATCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCATTTTTGTGTTTTGATTTACCATTTCCGTTGAA                                                                                                                                                                                                                                                                      ]
[+] EMBL BX609423             [                                                                                                                                                                                                              TTTTGATAGGTATTCGAGTGAAACTTACCTGACATCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACATTCAACGCTCGCATGTAGAGAGCTGTGTGCAGGAGAGATAAAATGAAATGATAAAATTAGATTTACTGCAACTGTTTTTAATGAAACTTCATAATGTTTAACGATAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTAAGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTG]




>consensus_3675#0
AAACGGAAGACTAACGAACGTTTTCGAACGTTCGAGCAGTATACTGGCACGAACGATTTC
CGGCCCATCGTCTGACACTGAACGCTTCTGTGCCTGCTATCGGATCGAAATCGAATGGGA
CGCCATTTTCGCACCGATCGGAGGCACAGAGTCGGAAGGGACGACAGGCTAGCCCGTGCG
CAAGCAGACAGCAGGCGTTGCCTCAGTTTTGATAGGTATTCGAGTGAAACTTACCTGACA
TCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCC
TGACGGGTTGATGTTTGCTTTCTCATTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCA
CAGCCACATTGCAACGACATTCAACGCTCGCATGTAGAGAGCTGTGTGCAGGAGAGATAA
AATGAAATGATAAAATTAGATTTACTGCAACTGTTTTTAATGAAACTTCATAATGTTTAA
CGATAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGA
TTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTAAGTTTCCATTGCATCG
TTTCAAAAGAAGTAGCGTG

consensusID : consensus_3675#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [AGAATCCCCCGAGGTTCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACCATTCAACGCTCGCATGTAGCAGAGCTGTGTGCAGGAGCAGCATCAAAATGCANACATGATNAAAATTAGCATTTACTGCAACTGTATTTTCAATGAAACTTCATAATGTTTANACGATAAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTANGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTGCAATAGGGTGAAGTCATGCAAGACTTGAGCAACCGTATAATTAACTCTCCAGTAACCGAACAGGAGCAATTAAGTTGTGCATGTGCTGAATANTGTCGACGCGAAAACCATCTTCAAACTCGTTCAAACANAAGT]

[+] EMBL AL692361             [AGAATCCCCCGAGGTTCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACCATTCAACGCTCGCATGTAGCAGAGCTGTGTGCAGGAGCAGCATCAAAATGCANACATGATNAAAATTAGCATTTACTGCAACTGTATTTTCAATGAAACTTCATAATGTTTANACGATAAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTANGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTGCAATAGGGTGAAGTCATGCAAGACTTGAGCAACCGTATAATTAACTCTCCAGTAACCGAACAGGAGCAATTAAGTTGTGCATGTGCTGAATANTGTCGACGCGAAAACCATCTTCAAACTCGTTCAAACANAAGT]




>consensus_3675#1
AGAATCCCCCGAGGTTCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACT
GACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCAT
TTCCGTTGAAGCACAGCCACATTGCAACGACCATTCAACGCTCGCATGTAGCAGAGCTGT
GTGCAGGAGCAGCATCAAAATGCANACATGATNAAAATTAGCATTTACTGCAACTGTATT
TTCAATGAAACTTCATAATGTTTANACGATAAAGAGCTATGCAAAAGCATTTACTCCCCC
GCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAA
AACATGAATTANGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTGCAATAGGGTGAAGT
CATGCAAGACTTGAGCAACCGTATAATTAACTCTCCAGTAACCGAACAGGAGCAATTAAG
TTGTGCATGTGCTGAATANTGTCGACGCGAAAACCATCTTCAAACTCGTTCAAACANAAG
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3675#0      AAACGGAAGACTAACGAACGTTTTCGAACGTTCGAGCAGTATACTGGCACGAACGATTTC 60
consensus_3675#1      ------------------------------------------------------------
                                                                                  

consensus_3675#0      CGGCCCATCGTCTGACACTGAACGCTTCTGTGCCTGCTATCGGATCGAAATCGAATGGGA 120
consensus_3675#1      ------------------------------------------------------------
                                                                                  

consensus_3675#0      CGCCATTTTCGCACCGATCGGAGGCACAGAGTCGGAAGGGACGACAGGCTAGCCCGTGCG 180
consensus_3675#1      ------------------------------------------------------------
                                                                                  

consensus_3675#0      CAAGCAGACAGCAGGCGTTGCCTCAGTTTTGATAGGTATTCGAGTGAAACTTACCTGACA 240
consensus_3675#1      ----------------------------------------------AGAATCCCCCGAGG 14
                                                                    * * *  ** **  

consensus_3675#0      TCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCC 300
consensus_3675#1      TT-CTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCC 73
                      *  *********************************************************

consensus_3675#0      TGACGGGTTGATGTTTGCTTTCTCATTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCA 360
consensus_3675#1      TGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCA 133
                      ************************ ***********************************

consensus_3675#0      CAGCCACATTGCAACGAC-ATTCAACGCTCGCATGTAG-AGAGCTGTGTGCAGGAGAGAT 418
consensus_3675#1      CAGCCACATTGCAACGACCATTCAACGCTCGCATGTAGCAGAGCTGTGTGCAGGAGCAGC 193
                      ****************** ******************* *****************    

consensus_3675#0      A---AAATGAAA---TGATAAAA-TTAG-ATTTACTGCAACTGT--TTTTAATGAAACTT 468
consensus_3675#1      ATCAAAATGCANACATGATNAAAATTAGCATTTACTGCAACTGTATTTTCAATGAAACTT 253
                      *   ***** *    **** *** **** ***************  *** **********

consensus_3675#0      CATAATGTTTAA-CGATAA-GAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATG 526
consensus_3675#1      CATAATGTTTANACGATAAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATG 313
                      ***********  ****** ****************************************

consensus_3675#0      GTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTAAG 586
consensus_3675#1      GTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTANG 373
                      ********************************************************** *

consensus_3675#0      TTTCCATTGCATCGTTTCAAAAGAAGTAGCGTG--------------------------- 619
consensus_3675#1      TTTCCATTGCATCGTTTCAAAAGAAGTAGCGTGCAATAGGGTGAAGTCATGCAAGACTTG 433
                      *********************************                           

consensus_3675#0      ------------------------------------------------------------
consensus_3675#1      AGCAACCGTATAATTAACTCTCCAGTAACCGAACAGGAGCAATTAAGTTGTGCATGTGCT 493
                                                                                  

consensus_3675#0      ------------------------------------------------
consensus_3675#1      GAATANTGTCGACGCGAAAACCATCTTCAAACTCGTTCAAACANAAGT 541