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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence
[AATGCCCGAGGTTTNATGTGTTACCGCAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGCTGGACGATCTGTACAATAAGGACACGCAGGAACTTTTGCAGCAGATGTAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTAACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTGCCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAAGCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCTCCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAACCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA]
[+] EMBL AL692457 [AATGCCCGAGGTTTNATGTGTTACCGCAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGCTGGACGATCTGTACAATAAGGACACGCAGGAACTTTTGCAGCAGATGTAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTAACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTGCCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAAGCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCTCCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAACCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA]
consensusID : consensus_3683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence
[AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGCGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTTTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGCAGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACAGGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTAAATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCTACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCAGTAAGTTAAGATTGAAAACATTTGCTATATTCCT]
[+] EMBL BX618222 [AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGCGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTTTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGCAGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACAGGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTAAATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCTACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCAGTAAGTTAAGATTGAAAACATTTGCTATATTCCT]
consensusID : consensus_3683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGCGCTTCAAAGAGCNCATCACTAATGTAAGCGTTAGACTGGAAAGGNAGG]
[+] EMBL BX623692 [AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGCGCTTCAAAGAGCNCATCACTAATGTAAGCGTTAGACTGGAAAGGNAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3683#1 ----------------AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCAT 44
consensus_3683#2 AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCAT 60
consensus_3683#0 ----------------------------------AATGCCCGAGGTTTNATGTGTTACCG 26
** *** * ** *
consensus_3683#1 CGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTC 104
consensus_3683#2 CGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTC 120
consensus_3683#0 CAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGC 86
* ** * ** *** * * *** * * **** * * * *
consensus_3683#1 TGAATGACTCTGGACGACTCCAGACGATTCCGAACGAT----------TCCGGGCGGAGG 154
consensus_3683#2 TGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGG 180
consensus_3683#0 TGGACGA-TCTGTACAAT----AAGGACACGCAGGAACT--------TTTGCAGCAGATG 133
** * ** **** ** * * ** * * * * ** ** *
consensus_3683#1 GTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGC-GCTCCAAAGAGCACATC 213
consensus_3683#2 GTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGC-GCTTCAAAGAGCNCATC 239
consensus_3683#0 -TAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATC 192
* * **** **** ******************* *** ******** ****
consensus_3683#1 ACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACG 273
consensus_3683#2 ACTAATGTAAGCGTTAGACTGGAAAGGNAGG----------------------------- 270
consensus_3683#0 ACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACG 252
********** **************** ***
consensus_3683#1 AAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGT 333
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 AAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGT 312
consensus_3683#1 TTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTT 393
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 ATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTT 372
consensus_3683#1 ATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCG 453
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 TATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGG 432
consensus_3683#1 GAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGC 513
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 CGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTA 492
consensus_3683#1 AGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACA 573
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 ACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTG 552
consensus_3683#1 GGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTA 633
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 CCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAA 612
consensus_3683#1 AATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCT 693
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 GCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCT 672
consensus_3683#1 ACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCA 753
consensus_3683#2 ------------------------------------------------------------
consensus_3683#0 CCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAA 732
consensus_3683#1 GTAAGTTAAGATTGAAAACATTTGCTATATTCCT--------------------- 787
consensus_3683#2 -------------------------------------------------------
consensus_3683#0 CCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA 787
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||