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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[CGAGGTTNGGTTGCCTATNTCAGACTGNNATGCTAGATACTTTTATGGTGATCTGGTCCTGTNCTCCTGTGAAGGTTACGGTTCCGATGCAATAATTTATCTCAAGGCATATTTCAGATGAAGCAAACGAATNGTATACCAATATNTCAATAAAACTAGCACCAGATATTATAAAGCAACCGTACCAACTGGTGATATGGTCCAATCAGGGCAAGGAACTTTACCAACAGGTTGTTGTAGCCGTTTTACTAAACGACCTTGTTGTTACGAATGTGATGTAANAGGAGCTCAAATTGACAGNAACGACTGGATCTACAACTGACCGCTCGCGCCCTACTCATATNGGTTACCCAAATTTGGAACGGAAACTTCTTAATTTCTTCCCCCGGCCTTNTACTACTTAACTACTTAAACTTACTAACCGATTGTTCGCCTGGACGNCTAACCAAANTGGTTCNANGGGTCTATAACAGNCGGCACCCCTTTCNGGCTATCGACGGTANACCCTNACCCTACTTNCTCTGGACTGCACTTAAANNGATACAAANCATGNNTCAAAAAATGGCNTACCCCTAGGCCTGCATCNAANCTCTCCAACATTACTCAACACCTTGGCTTACTTCCATAAACCAACCGGCTCTACTTACNCNGCACGTCNNCCTNNCTTNCACCCCGCCCGATCCACNTGCACNACACCCTANTTAAGNTNAGGANATGGGATCTAAAGNCCTTANCANACCNACCCCCACCTTCCNNTACACCACCACCACGNCAACANGCACAACACCAAACACCNC]
[+] EMBL AL692548 [CGAGGTTNGGTTGCCTATNTCAGACTGNNATGCTAGATACTTTTATGGTGATCTGGTCCTGTNCTCCTGTGAAGGTTACGGTTCCGATGCAATAATTTATCTCAAGGCATATTTCAGATGAAGCAAACGAATNGTATACCAATATNTCAATAAAACTAGCACCAGATATTATAAAGCAACCGTACCAACTGGTGATATGGTCCAATCAGGGCAAGGAACTTTACCAACAGGTTGTTGTAGCCGTTTTACTAAACGACCTTGTTGTTACGAATGTGATGTAANAGGAGCTCAAATTGACAGNAACGACTGGATCTACAACTGACCGCTCGCGCCCTACTCATATNGGTTACCCAAATTTGGAACGGAAACTTCTTAATTTCTTCCCCCGGCCTTNTACTACTTAACTACTTAAACTTACTAACCGATTGTTCGCCTGGACGNCTAACCAAANTGGTTCNANGGGTCTATAACAGNCGGCACCCCTTTCNGGCTATCGACGGTANACCCTNACCCTACTTNCTCTGGACTGCACTTAAANNGATACAAANCATGNNTCAAAAAATGGCNTACCCCTAGGCCTGCATCNAANCTCTCCAACATTACTCAACACCTTGGCTTACTTCCATAAACCAACCGGCTCTACTTACNCNGCACGTCNNCCTNNCTTNCACCCCGCCCGATCCACNTGCACNACACCCTANTTAAGNTNAGGANATGGGATCTAAAGNCCTTANCANACCNACCCCCACCTTCCNNTACACCACCACCACGNCAACANGCACAACACCAAACACCNC]
consensusID : consensus_3693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence
[AAGTGGATCAACTTTTCAAGTACATGTACAGTACTGCACCTCAACCGCCGAAATCTAAAACAGATTTGCCGTTAGTTCCATTGGCTGGATATGGATACGGGTTGCCCATTTCCAGACTGTATGCTAGATACTTTCATGGTGATCTGGTCCTGTTCTCCTGTGAAGGTTACGGTTCCGATGCAATAATTTATCTCAAGGCATTTTCAGATGAAGCAAACGAATTGTTACCAATATTCAATAAAACTAGCACCAGATTTTATAAAGCAACCGTACCAACTGGTGATTGGTCCAATCAGGTAAAGGGCAAAAAAATCAAACCTCCTATAGTTATATAATTATTACTTCATCAGTTGTTATGTTCGTTACTATAATTGAACCCTTTGGTTAATCAGAATTGTGCAACATCAGGATCAAATAATTGATGAAAGATATAAACATATATCAATTAAAGTAATATAAGCATTTTATCGGCTTTCATGGACTTTTATGTCTATGAACTATTATGGATATTTTGTTAATTATAAAATTATGTGCTGTAAGAGATTGTAAATCTTAAAGCTTTCACTATATAATTTCCGTTGGATCATCCACCATTGTACGTAATATTTGCAGCCCACCTTATCAACATCTTAGGTGTAGTATTAAAAATACATTACTTGTAGGAGGTAATATTGTAGGTATAGTATTTTATGTTGTGGCGTTCTAGCTTGAATACGTTTGAATAGTTTTCTTTTGTTCCCTCTTCGCATCTTCTTATTGTTTATTGTTGCGGGCATTTCCGTCT]
[+] EMBL BX608614 [AAGTGGATCAACTTTTCAAGTACATGTACAGTACTGCACCTCAACCGCCGAAATCTAAAACAGATTTGCCGTTAGTTCCATTGGCTGGATATGGATACGGGTTGCCCATTTCCAGACTGTATGCTAGATACTTTCATGGTGATCTGGTCCTGTTCTCCTGTGAAGGTTACGGTTCCGATGCAATAATTTATCTCAAGGCATTTTCAGATGAAGCAAACGAATTGTTACCAATATTCAATAAAACTAGCACCAGATTTTATAAAGCAACCGTACCAACTGGTGATTGGTCCAATCAGGTAAAGGGCAAAAAAATCAAACCTCCTATAGTTATATAATTATTACTTCATCAGTTGTTATGTTCGTTACTATAATTGAACCCTTTGGTTAATCAGAATTGTGCAACATCAGGATCAAATAATTGATGAAAGATATAAACATATATCAATTAAAGTAATATAAGCATTTTATCGGCTTTCATGGACTTTTATGTCTATGAACTATTATGGATATTTTGTTAATTATAAAATTATGTGCTGTAAGAGATTGTAAATCTTAAAGCTTTCACTATATAATTTCCGTTGGATCATCCACCATTGTACGTAATATTTGCAGCCCACCTTATCAACATCTTAGGTGTAGTATTAAAAATACATTACTTGTAGGAGGTAATATTGTAGGTATAGTATTTTATGTTGTGGCGTTCTAGCTTGAATACGTTTGAATAGTTTTCTTTTGTTCCCTCTTCGCATCTTCTTATTGTTTATTGTTGCGGGCATTTCCGTCT]
consensusID : consensus_3693#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence
[CATGCTGTTTGAGCTATTCANGAACTCAATGCGTGCTGTAATGGAGCATCACGGAACAGAAAATGATGTGCCTCCGATCAAGGTTACTATCGTAAAGGGTAAAGAGGATATATGTGTTAAGATGTCCGATCAAGGGGGCGGTATTCCACGATCGCAAGTGGATCAACTTTTCAAGTACATGTACAGTACTGCACCTCAACCGCCGAAATCTAAAACAGATTTGCCGTTAGTTCCATTGGCTGGATATGGATACGGGTTGCCCATTTCCAGACTGTATGCTAGATACTTTCATGGTGATCTGGTCCTGTTCTCCTGTGAAGGTTACGGTTCCGATGCAATAATTTATCTCAAGGCATTTTCAGATGAAGCAAACGAATTGTTACCAATATTCAATAAAACTAGCACCAGATTTTATAAAGCAACCGTACCAACTGGTGATTGGTCCAATCAGGGCAAGAACTTTACCAACAGGTTGTTGTAGCCGTTTTACTAACGACTGTTGTACGAATGTGATGTTTAGAGCTCAATTGACAGTACGATGGATCTCAACTGACCGTCGCCCTTTATTTGTCCCAATTTGACGAACTCTATTCTTCCCGCTTACTACTACTACTACTTCTACGTGTCGCTGAGCTACAATGTTTGGTTTAACGACCTTTGTTGACGTTTTTAGCTATTTTGATGATAGTTACTTCAATGTTCTGTTTTATTTTATTAAATGTATCTTTTTCGTTATAAGATTATATAAAAATTATGAAAATATATTGATGTTTATATTT]
[+] EMBL BX625960 [CATGCTGTTTGAGCTATTCANGAACTCAATGCGTGCTGTAATGGAGCATCACGGAACAGAAAATGATGTGCCTCCGATCAAGGTTACTATCGTAAAGGGTAAAGAGGATATATGTGTTAAGATGTCCGATCAAGGGGGCGGTATTCCACGATCGCAAGTGGATCAACTTTTCAAGTACATGTACAGTACTGCACCTCAACCGCCGAAATCTAAAACAGATTTGCCGTTAGTTCCATTGGCTGGATATGGATACGGGTTGCCCATTTCCAGACTGTATGCTAGATACTTTCATGGTGATCTGGTCCTGTTCTCCTGTGAAGGTTACGGTTCCGATGCAATAATTTATCTCAAGGCATTTTCAGATGAAGCAAACGAATTGTTACCAATATTCAATAAAACTAGCACCAGATTTTATAAAGCAACCGTACCAACTGGTGATTGGTCCAATCAGGGCAAGAACTTTACCAACAGGTTGTTGTAGCCGTTTTACTAACGACTGTTGTACGAATGTGATGTTTAGAGCTCAATTGACAGTACGATGGATCTCAACTGACCGTCGCCCTTTATTTGTCCCAATTTGACGAACTCTATTCTTCCCGCTTACTACTACTACTACTTCTACGTGTCGCTGAGCTACAATGTTTGGTTTAACGACCTTTGTTGACGTTTTTAGCTATTTTGATGATAGTTACTTCAATGTTCTGTTTTATTTTATTAAATGTATCTTTTTCGTTATAAGATTATATAAAAATTATGAAAATATATTGATGTTTATATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3693#0 ------------------------------------------------------------
consensus_3693#2 ------------------------------------------------------------
consensus_3693#1 AAGTGGATCAACTTTTCAAGTACATGTACAGTACTGCACCTCAACCGCCGAAATCTAAAA 60
consensus_3693#0 -----------------------------CGAGGTT-NG-GTTGCCTATN---TCAGACT 26
consensus_3693#2 ---------------------------CATGCTGTT-TGAGCTATTCANGAACTCAATGC 32
consensus_3693#1 CAGATTTGCCGTTAGTTCCATTGGCTGGATATGGATACGGGTTGCCCATT--TCCAGACT 118
* * * * * * **
consensus_3693#0 GNNATGCTAGATACTTTTATGGTG-ATCTGGTCCTGTNCTCCTG-TGAAGGTTACGGTTC 84
consensus_3693#2 GTGCTGTAATGGAGCATCACGGAACAGAAAATGATGTGCCTCCGATCAAGGTTACTATCG 92
consensus_3693#1 GTA-TGCTAGATACTTTCATGGTG-ATCTGGTCCTGTTCTCCTG-TGAAGGTTACGGTTC 175
* ** * * * * ** * * *** * * * * ******** *
consensus_3693#0 CGATGCAATAATTTATCTCAAGGCATATTTCAGATGAAGCAAACGAATNGTATACCAATA 144
consensus_3693#2 TAAAG-GGTAA--------AGAGGATATATGTGTTAAGATGTCCGATCAAGGGGGCGGTA 143
consensus_3693#1 CGATGCAATAATTTATCTCAAGGCAT-TTTCAGATGAAGCAAACGAATTGT-TACCAATA 233
* * *** * * ** * * * * * *** * **
consensus_3693#0 TNTCAATAAAACTAGCACCAGATATTATAAAGCAACCGTACCAACTGGTGATATGGTCCA 204
consensus_3693#2 TTCCACGATCGCAAGTGGATCAACTTTTCAAGTACATGTACAGTACTGCACCTCAACCGC 203
consensus_3693#1 TT-CAATAAAACTAGCACCAGATTTTATAAAGCAACCGTACCAACTGGTGAT-TGGTCCA 291
* ** * * ** * ** * *** * **** * *
consensus_3693#0 ATCAGGGCAAGGAACTTTACCAACAGGTTGTTGTAGCCGTTTTACTAAACGACCTTGTTG 264
consensus_3693#2 CGAAATCTAAAACAGATTTGCCGTTAGTTCCATTGGCTGGATATGGATACGGGTTGCCCA 263
consensus_3693#1 ATCAGGTAAAGGGCAAAAAAATCAAACCTCCTATAGTTATATAATTA--TTACTTCATCA 349
* ** * * * * * *
consensus_3693#0 TTACGAATGTGATGTAANAGGAGCTCAAATTGACAGNAACGACTGGATCTACAACTGACC 324
consensus_3693#2 TTTCCAGACTG-TATGCTAGATACTTTCAT-GGTGATCTGGTCCTGTTCTCCTG-TGAAG 320
consensus_3693#1 GT-------TGTTATGTTCGTTACTATAATTGAACCCTTTGGTTAATCAGAATTGTGCAA 402
* ** * * * ** ** * * **
consensus_3693#0 GCTCGCGCCCTACTCAT--ATNGGTTACCCAAA----TTTGGAACGGAAACTTCTTAATT 378
consensus_3693#2 GTTACGGTTCCGATGCA--ATAATTTATCTCAAGGCATTTTCAGATGAAGCAAACGAATT 378
consensus_3693#1 CATCAGGATCAAATAATTGATGAAAGATATAAACATATAT-CAATTAAAGTAATATAAGC 461
* * * * ** * ** * * * ** **
consensus_3693#0 TCTTCCCCCGGCCTTNTACTACTTAACTACTTAAACTTACTAACCGATTGTTCGCCTGGA 438
consensus_3693#2 GTTA---CCAATATTCAATAAAACTAGCACCAGATTTTATAAAGCAACCGTACCAACTGG 435
consensus_3693#1 ATTTTA-TCGGCTTTCATGGACTTTTATGTCTATGAACTATTATGGATATTTTG--TTAA 518
* * ** * * * *
consensus_3693#0 CGNCTAACCAAANTGGTTCNANGGGTCTAT-AACAGNCGGC-ACCCCTTTCNGGCTATCG 496
consensus_3693#2 TGATTGGTCCAATCAGGGCAAGAACTTTACCAACAGGTTGTTGTAGCCGTTTTACTAACG 495
consensus_3693#1 TTATAAAATTATGTGCTGTAAGAGATTGTAAATCTTAAAGCTTTCACTATATAATTTCCG 578
* * * * * * * * * **
consensus_3693#0 ----ACGGTANACCCTNACCCTACTTNCTCTGGACTGCACTTAAANNGATACAAANCATG 552
consensus_3693#2 ----ACTGT-TGTACGAATGTGA--TGTTTAGAGCTCAATTGACAGTACGATGGATCTCA 548
consensus_3693#1 TTGGATCATCCACCATTGTACGTAATATTTGCAGCCCACCTTATCAACATCTTAGGTGTA 638
* * * * * * *
consensus_3693#0 NNTCAAAAAATGGCNTACCCCTAGGCCTGCATCNAANCTCTCCAACATTACTCAACACCT 612
consensus_3693#2 ACT--GACCGTCGCCCTTTATTTGTCCCAATTTGACGAACTCTATTCTTCCCGCTTACTA 606
consensus_3693#1 GTATTAAAAATACATTACTTGTAGGAGGTAATATTGTAGGTATAGTATTTT---ATGTTG 695
* * * * * * * **
consensus_3693#0 TGGCT--TACTTCCATAAACCAACCGGCTCTACTTACNCNGCACGTCNNCCTNNCTTNCA 670
consensus_3693#2 CTACTACTACTTCTACGTGTCGCTGAGCTACAAT-GTTTGGTTTAACGACCTTTGTTG-- 663
consensus_3693#1 TGGCG-----TTCTA-GCTTGAATACGTTTGAATAGTTTTCTTTTGTTCCCTCTTCGCAT 749
* *** * * * * * ***
consensus_3693#0 CCCCGCCCGATCCACNTGCACNACACCCTANTTAAGNTNAGGANATGGGATCTAAAGNCC 730
consensus_3693#2 -ACGTTTTTAGCTATTTTGATGA-----TAGTTACTTCAATGTTCTG--TTTTATTTTAT 715
consensus_3693#1 CTTCTTATTGTTTATTGTTGCGGG----CATTTCCGTCT--------------------- 784
* * **
consensus_3693#0 TTANCANACCNACCCCCACCTTCCNNTACACCACCACCACGNCAACANGCACAACACCAA 790
consensus_3693#2 TAAATGTATCTTTTTCGTTATAAGATTATATAAAAATTATGAAAATATATTGATGTTTAT 775
consensus_3693#1 ------------------------------------------------------------
consensus_3693#0 ACACCNC 797
consensus_3693#2 ATTT--- 779
consensus_3693#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||