cluster # 3694

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Anopheles gambiae
cluster # 3694 cluster # 3694 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3694#0 length = 719 sequences # 1

consensus_3694#1 length = 644 sequences # 1
consensus_3694#2 length = 511 sequences # 1

consensusID : consensus_3694#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence

                              [CCCGAGGTTAACTTTCTACCAAACTTAAACACAAATTCACAAACAAATATCATAAACTACTAAATTAATCGACATAAAACCTATCACTGACACAGCAGCATTAAAAAAGCTCTCGGCATAACCATGGAAACAAAAATGGTGTTTCAAGGGCGTCCTTCTAATTATCGCTTGTAAAAGCGAACATTCTCTCTCTCGCAATCCCTCAACCGACTACTTCGTGGCAAGCGAGGGGCTGATGCTGATGATGTTCTCGTTAGACAAAACGTAATACTCGTAGCTCGGCTCGTGTAACATTAACGCGCTTGAGCAGGTTTAATTCGATCGATCGGACGTCCGATGCGTGTGCTCCAGGAAGAGCGCAGCCAGCACGATATCCAATGGCTTGTTGGGTGCATTACATTTCTAACTTACCTTTCTCTTCTTTCTCTTCCCCCTTCCACCGATTGGTTCCACCGAACGCTTCCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCCGCCCGGGCCAGATTGNCGTACATCGGCGAGACACACTTATGCGCCGGGCCGAACTGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGGCAAGGCGCTACTTCAGTGCGAAGCGAAGAAGGGCGTCATACGCGCCTGAAGCGCCTACGCGNCGAACGT]

[+] EMBL AL692566             [CCCGAGGTTAACTTTCTACCAAACTTAAACACAAATTCACAAACAAATATCATAAACTACTAAATTAATCGACATAAAACCTATCACTGACACAGCAGCATTAAAAAAGCTCTCGGCATAACCATGGAAACAAAAATGGTGTTTCAAGGGCGTCCTTCTAATTATCGCTTGTAAAAGCGAACATTCTCTCTCTCGCAATCCCTCAACCGACTACTTCGTGGCAAGCGAGGGGCTGATGCTGATGATGTTCTCGTTAGACAAAACGTAATACTCGTAGCTCGGCTCGTGTAACATTAACGCGCTTGAGCAGGTTTAATTCGATCGATCGGACGTCCGATGCGTGTGCTCCAGGAAGAGCGCAGCCAGCACGATATCCAATGGCTTGTTGGGTGCATTACATTTCTAACTTACCTTTCTCTTCTTTCTCTTCCCCCTTCCACCGATTGGTTCCACCGAACGCTTCCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCCGCCCGGGCCAGATTGNCGTACATCGGCGAGACACACTTATGCGCCGGGCCGAACTGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGGCAAGGCGCTACTTCAGTGCGAAGCGAAGAAGGGCGTCATACGCGCCTGAAGCGCCTACGCGNCGAACGT]




>consensus_3694#0
CCCGAGGTTAACTTTCTACCAAACTTAAACACAAATTCACAAACAAATATCATAAACTAC
TAAATTAATCGACATAAAACCTATCACTGACACAGCAGCATTAAAAAAGCTCTCGGCATA
ACCATGGAAACAAAAATGGTGTTTCAAGGGCGTCCTTCTAATTATCGCTTGTAAAAGCGA
ACATTCTCTCTCTCGCAATCCCTCAACCGACTACTTCGTGGCAAGCGAGGGGCTGATGCT
GATGATGTTCTCGTTAGACAAAACGTAATACTCGTAGCTCGGCTCGTGTAACATTAACGC
GCTTGAGCAGGTTTAATTCGATCGATCGGACGTCCGATGCGTGTGCTCCAGGAAGAGCGC
AGCCAGCACGATATCCAATGGCTTGTTGGGTGCATTACATTTCTAACTTACCTTTCTCTT
CTTTCTCTTCCCCCTTCCACCGATTGGTTCCACCGAACGCTTCCAGATCAGGGCGCAGTG
CTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCCG
CCCGGGCCAGATTGNCGTACATCGGCGAGACACACTTATGCGCCGGGCCGAACTGGGCCG
GCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGGCAAGGCGCTA
CTTCAGTGCGAAGCGAAGAAGGGCGTCATACGCGCCTGAAGCGCCTACGCGNCGAACGT

consensusID : consensus_3694#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGGCAACCTGTGTACAGGCAACAAGCGCGAGCAGTACGAATCACGCCGCGTCTCTTCGATGCGCAACACCGAACGACAACGAAAATAGCGTGATTGTTTTTTTTTTGTTTGTGCACGTGAAGATAGCCAGCAGAAGGAGAGGCCCTACAGCACAACAAACGAGGTCACACGTAACCCTTGTGTGGGTATTGCAGGCGCAGGAATATTGCAACGCGAAAGTTAAAAGGATAGGTGATCACGACACGGCTCCACCAGCAGGACGGGTGTTCCCCCCGAGGAAGGGTTTGGAGTCATTCAGAAAAGGGATCTGTTACGGTGGAACTTGAATTGGATTGCAGCTTTCAGGCAGCACGAGGAACACTCCTTTTGGACATTCCTAGCCACGGTGCCGGCTCAACAATCGATTGAGGAGTGGCTTCAATTTCTGCTATCCTCAACTTCTGAGACACCTGCCAGTTCTTCTTGCTAAACAGTACCTACGACATTCGACAGTAAAATGAGACGACCGAGCGATTCCGACTATAACAAAACACATCTACCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCGCCCGGGCCAGATTGCGTACATCGGCGAG]

[+] EMBL BM576704             [CCGGCAACCTGTGTACAGGCAACAAGCGCGAGCAGTACGAATCACGCCGCGTCTCTTCGATGCGCAACACCGAACGACAACGAAAATAGCGTGATTGTTTTTTTTTTGTTTGTGCACGTGAAGATAGCCAGCAGAAGGAGAGGCCCTACAGCACAACAAACGAGGTCACACGTAACCCTTGTGTGGGTATTGCAGGCGCAGGAATATTGCAACGCGAAAGTTAAAAGGATAGGTGATCACGACACGGCTCCACCAGCAGGACGGGTGTTCCCCCCGAGGAAGGGTTTGGAGTCATTCAGAAAAGGGATCTGTTACGGTGGAACTTGAATTGGATTGCAGCTTTCAGGCAGCACGAGGAACACTCCTTTTGGACATTCCTAGCCACGGTGCCGGCTCAACAATCGATTGAGGAGTGGCTTCAATTTCTGCTATCCTCAACTTCTGAGACACCTGCCAGTTCTTCTTGCTAAACAGTACCTACGACATTCGACAGTAAAATGAGACGACCGAGCGATTCCGACTATAACAAAACACATCTACCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCGCCCGGGCCAGATTGCGTACATCGGCGAG]




>consensus_3694#1
CCGGCAACCTGTGTACAGGCAACAAGCGCGAGCAGTACGAATCACGCCGCGTCTCTTCGA
TGCGCAACACCGAACGACAACGAAAATAGCGTGATTGTTTTTTTTTTGTTTGTGCACGTG
AAGATAGCCAGCAGAAGGAGAGGCCCTACAGCACAACAAACGAGGTCACACGTAACCCTT
GTGTGGGTATTGCAGGCGCAGGAATATTGCAACGCGAAAGTTAAAAGGATAGGTGATCAC
GACACGGCTCCACCAGCAGGACGGGTGTTCCCCCCGAGGAAGGGTTTGGAGTCATTCAGA
AAAGGGATCTGTTACGGTGGAACTTGAATTGGATTGCAGCTTTCAGGCAGCACGAGGAAC
ACTCCTTTTGGACATTCCTAGCCACGGTGCCGGCTCAACAATCGATTGAGGAGTGGCTTC
AATTTCTGCTATCCTCAACTTCTGAGACACCTGCCAGTTCTTCTTGCTAAACAGTACCTA
CGACATTCGACAGTAAAATGAGACGACCGAGCGATTCCGACTATAACAAAACACATCTAC
CAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCT
GGGTCGGCGGTATCCGCCCGGGCCAGATTGCGTACATCGGCGAG

consensusID : consensus_3694#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [CCGCGGACGCGTGGGCGGAAGGCGTAGAAGCTCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGCCAGCGCGTCTGGGTCGGCGGCATCCGCCCGGGCCAGATTGCGTACATCGGCGAGACACACTTTGCGCCGGGCGAATGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGCAAGCGCTACTTCCAGTGCGAAGCGAAGAAGGGCGTCTTTTCGCGCCTGACGCGCCTAACGCGCGAACCGCTGGCGAATGCTGGCGGTGGCGGTGGTGACTCGACCGCCTCCACGCCGCTCGATGCGAGCTTCCGGTCGCTGACGTCACCGGCCCGGTCCGGCACCGTTTCGCCCACGCACAGCGTCCAGAGCTATGCCAGCAAATCGCCAGCGATGGCCGGAAAGGCCGCCTCACTGAACGTCGGCGACCGGGTGATCGTCTCGTCCGGGTTCGGGTCGCGCCCGGGCATGCTGAAG]

[+] EMBL BM618826             [CCGCGGACGCGTGGGCGGAAGGCGTAGAAGCTCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGCCAGCGCGTCTGGGTCGGCGGCATCCGCCCGGGCCAGATTGCGTACATCGGCGAGACACACTTTGCGCCGGGCGAATGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGCAAGCGCTACTTCCAGTGCGAAGCGAAGAAGGGCGTCTTTTCGCGCCTGACGCGCCTAACGCGCGAACCGCTGGCGAATGCTGGCGGTGGCGGTGGTGACTCGACCGCCTCCACGCCGCTCGATGCGAGCTTCCGGTCGCTGACGTCACCGGCCCGGTCCGGCACCGTTTCGCCCACGCACAGCGTCCAGAGCTATGCCAGCAAATCGCCAGCGATGGCCGGAAAGGCCGCCTCACTGAACGTCGGCGACCGGGTGATCGTCTCGTCCGGGTTCGGGTCGCGCCCGGGCATGCTGAAG]




>consensus_3694#2
CCGCGGACGCGTGGGCGGAAGGCGTAGAAGCTCAGATCAGGGCGCAGTGCTGACGGCGGA
CACGGACAGCTTCATCATCGGCCAGCGCGTCTGGGTCGGCGGCATCCGCCCGGGCCAGAT
TGCGTACATCGGCGAGACACACTTTGCGCCGGGCGAATGGGCCGGCGTCGTGCTGGACGA
GCCGAACGGCAAGAACGATGGGTCGGTCGCCGGCAAGCGCTACTTCCAGTGCGAAGCGAA
GAAGGGCGTCTTTTCGCGCCTGACGCGCCTAACGCGCGAACCGCTGGCGAATGCTGGCGG
TGGCGGTGGTGACTCGACCGCCTCCACGCCGCTCGATGCGAGCTTCCGGTCGCTGACGTC
ACCGGCCCGGTCCGGCACCGTTTCGCCCACGCACAGCGTCCAGAGCTATGCCAGCAAATC
GCCAGCGATGGCCGGAAAGGCCGCCTCACTGAACGTCGGCGACCGGGTGATCGTCTCGTC
CGGGTTCGGGTCGCGCCCGGGCATGCTGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3694#0      ---------------------------------------CCCGAGGTTAACTTTCTACCA 21
consensus_3694#2      ------------------------------------------------------------
consensus_3694#1      CCGGCAACCTGTGTACAGGCAACAAGCGCGAGCAGTACGAATCACGCCGCGTCTCTTCGA 60
                                                                                  

consensus_3694#0      AACTTAAACACAAATTCACAAACAAATATCATAAACTACTAAATTA-ATCGACATA-AAA 79
consensus_3694#2      -------CCGCGGACGCGTGGGCGGAAGGCGTAGAAGCTCAGATCA-G--GGCGCA-GTG 49
consensus_3694#1      TGCGCAACACCGAACGACAACGAAAATAGCGTGATTGTTTTTTTTTTGTTTGTGCACGTG 120
                                *  *           *   * *           *           *    

consensus_3694#0      CCTATCACTGACACA-GCAGCATTAAAAAAGCTCTCGGCATAACCATGGAAACAAAAATG 138
consensus_3694#2      CTGACGGCGGACACG-G----------ACAGCTT----CATCATCG-GCCAGCGCGTCTG 93
consensus_3694#1      AAGATAGCCAGCAGAAGGAGAGGCCCTACAGCACAACAAACGAGGTCACACGTAACCCTT 180
                         *   *   **   *          * ***       *  *               * 

consensus_3694#0      GTGTTTCAAGGGCGTCCTTCTAATT---ATCGCTTGTAAAAGCGA-ACATTCTCTCTCTC 194
consensus_3694#2      G---GTCGGCGGCATCCGCCCGGGCCAGATTGCGTACATCGGCGAGACACACTTTGCGCC 150
consensus_3694#1      GTGTGGGTATTGCAGGCGCAGGAATATTGCAACGCGAAAGTTAAAAGGATAGGTGATCAC 240
                      *          **   *               *    *      *   *          *

consensus_3694#0      GCAATCCCTCAACCGACTAC-------TTCGTGGCAAGCGAGG-----GGCTGATGCTGA 242
consensus_3694#2      G-GGCGAATGGGCCGGCG----------TCGTGCTGGACGAGCC----GAACGGCAAGAA 195
consensus_3694#1      GACACGGCTCCACCAGCAGGACGGGTGTTCCCCCCGAGGAAGGGTTTGGAGTCATTCAGA 300
                      *       *   **  *           **          **      *          *

consensus_3694#0      TGATGTTCTCGTT-AGACAAAACGTAATAC---TCGTAGC------TCGGCTCGTGTAAC 292
consensus_3694#2      CGATGGG-TCGGT-CGCCGGCAAGCGCTAC---TTCCAGT------GCGAAGCGAAGAA- 243
consensus_3694#1      AAAGGGATCTGTTACGGTGGAACTTGAATTGGATTGCAGCTTTCAGGCAGCACGAGGAAC 360
                        * *     * *  *     *           *   **        *    **   ** 

consensus_3694#0      ATTA---ACGCGCTTGAGCAGGTTTAATTC-GATCGATCGGACGTCCGATGCGTGTGCTC 348
consensus_3694#2      -------GGGCGTCTTTTCGCGCCTGACGC-GCCTAACGCGCGAACCGCTG-GCGAATGC 294
consensus_3694#1      ACTCCTTTTGGACATTCCTAGCCACGGTGCCGGCTCAACAATCGATTGAGGAGTGGCTTC 420
                               *    *              * *    *          *  * * *    *

consensus_3694#0      CAGGAAGAGCGCAGCCAGCAC----GATATCCAATGGCTTG-TTGGGTGCATTACATTTC 403
consensus_3694#2      TGGCGGTGGCGGTGGTGACTC----GACCGCCTCCACGCCG-CTCGATGCGAGCTTCCGG 349
consensus_3694#1      AATTTCTGCTATCCTCAACTTCTGAGACACCTGCCAGTTCTTCTTGCTAAACAGTACCTA 480
                                        *      **   *            * * *            

consensus_3694#0      TAACTTACCTTTCTCTTCTTTCTCTTCCCCCTTCCACCGATTGGTTCCACCGAACGCTTC 463
consensus_3694#2      TCGCTGACGTCACCGGCCCGGTCCGGCACCGTTTCGCCCACGCACAGCGTCCAGAGCT-- 407
consensus_3694#1      CGACATTCGACAGTAAAATGAGACGACCGAGCGATTCCGACTATAACAAAACACATCTAC 540
                         *   *               *  *         ** *            *   **  

consensus_3694#0      CAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCG-CGTC 522
consensus_3694#2      ---ATGCCAGCAAATCGCCAGCGATGGCCG-GAAAGGCCGCCTCACTGAACGTCGGCGAC 463
consensus_3694#1      CAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCG-CGTC 599
                         **    **  *  **   **  ** *  * *  **  * ***  *  *  ** ** *

consensus_3694#0      TGGGTCGGCGGTATCCCGCCCGGGCCAGATTGNCGTACATCGGCGAGACACACTTATGCG 582
consensus_3694#2      CGGGTGATCG---TCTCGTCCGGGTTCGG--GTCGCGCCCGGGCATGCTGAAG------- 511
consensus_3694#1      TGGGTCGGCGGTATC-CGCCCGGGCCAGATTG-CGTACATCGGCGAG------------- 644
                       ****   **   ** ** *****   *   * **  *   ***  *             

consensus_3694#0      CCGGGCCGAACTGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGG 642
consensus_3694#2      ------------------------------------------------------------
consensus_3694#1      ------------------------------------------------------------
                                                                                  

consensus_3694#0      TCGCCGGGCAAGGCGCTACTTCAGTGCGAAGCGAAGAAGGGCGTCATACGCGCCTGAAGC 702
consensus_3694#2      ------------------------------------------------------------
consensus_3694#1      ------------------------------------------------------------
                                                                                  

consensus_3694#0      GCCTACGCGNCGAACGT 719
consensus_3694#2      -----------------
consensus_3694#1      -----------------