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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence
[GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGATTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGTGAATGGCGTCGTTTGATTTCAACCATTTCCTTCCGGAGCGGGGAGTAGCTCGAGGGGCGTTTGTTACCGATCATTCAAACGCAGTAAGTGTCCAATAGCTTTATACAAACGAATGATAACTCAAGTATGCATACCAGGACCAGGCGGGGAGAGGTGAGGGGTGGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAAAAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGAGCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTGACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAATACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCAAAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA]
[+] EMBL BX625367 [GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGATTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGTGAATGGCGTCGTTTGATTTCAACCATTTCCTTCCGGAGCGGGGAGTAGCTCGAGGGGCGTTTGTTACCGATCATTCAAACGCAGTAAGTGTCCAATAGCTTTATACAAACGAATGATAACTCAAGTATGCATACCAGGACCAGGCGGGGAGAGGTGAGGGGTGGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAAAAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGAGCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTGACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAATACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCAAAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA]
[+] EMBL BX622806 [ AATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGACTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGT ]
consensusID : consensus_3721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[GTACGTCCTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAGGCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCTGTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNACCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGAGCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNACGCAGTATAGTGTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGNTCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGTGTGCAGAATTAGAGAGTAGTAGNACGCTCGCCACATTCCAGGATTATTTGTTTTGGCANGCCCTGGACCATGGCCAGGACATATGATTCNGACCAGCACACATAGATATACTACAGGTGTACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAATACGAGAGGAAAAAAAAAAAAAATAAGGGGGGATCT]
[-] EMBL AL692940 [GTACGTCCTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAGGCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCTGTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNACCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGAGCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNACGCAGTATAGTGTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGNTCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGTGTGCAGAATTAGAGAGTAGTAGNACGCTCGCCACATTCCAGGATTATTTGTTTTGGCANGCCCTGGACCATGGCCAGGACATATGATTCNGACCAGCACACATAGATATACTACAGGTGTACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAATACGAGAGGAAAAAAAAAAAAAATAAGGGGGGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3721#0 GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGC 60
consensus_3721#1 ------------------------------------------------------------
consensus_3721#0 AACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAA-CCCCTTCAAACCAG 119
consensus_3721#1 -----------------GTACGTC-CTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAG 42
* * ** *** **** * *** * ******* ****
consensus_3721#0 GC-AGCAGATAAAGCAGATTTCCACATAAG-CGCTGGAGCGGCCCCGCAAGTGCTTGGCT 177
consensus_3721#1 GCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCT 102
** * *** * ** * ******* ****** ************** *****
consensus_3721#0 -TGGCTCT-CTGTTCCTGTT-----TCGTTTTTAATTTGA-------TGCTTTTCCGTA- 222
consensus_3721#1 GTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNA 162
******* ***** ** * *** **** * *** ** ** *****
consensus_3721#0 CTTCTTTGTG----AATGG-----CGTCGTTTGATT-TCAACC----ATTTCCTTCCGGA 268
consensus_3721#1 CCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGA 222
* * ***** **** ** ** **** **** * ** * * *****
consensus_3721#0 GCGGG--GAGTAGCT-CGAGGGGC-GTTTG--TTACC-GATCATTCAAACGCAGTA-AGT 320
consensus_3721#1 GCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNA-CGCAGTATAGT 281
***** *** *** ******** ***** ***** ******** * ******* ***
consensus_3721#0 GTCCAAT-AGCTTTATACAAACGAATGATA-ACTCAAGTAT-GCAT-ACCA-GGACCAGG 375
consensus_3721#1 GTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGN 341
****** ******* ***** **** ********** **** **** *******
consensus_3721#0 CGGGGAGAGGTGAGGGGT-GGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAA 434
consensus_3721#1 TCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGT-GTGCAGAATTAGAGAGTAG 400
**************** **** * ** **** ** * *** ****** *
consensus_3721#0 AAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGA 494
consensus_3721#1 TAGNACGCTCGCCAC--ATTCCAGGATTATTTGTTTTG-GCANGC--CCTGGACCATGG- 454
* * * * * * * ** *** ******** *** ** * ** ** *
consensus_3721#0 GCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTG-ACAC 553
consensus_3721#1 -CCAGGACAT-----ATGATTCNGACCAGCA---CACATAGATATACTACAGGTGTACAC 505
* **** * ******* ** ***** ** ********** ******* ****
consensus_3721#0 GCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCA 613
consensus_3721#1 GCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCA 565
******************************************** * ***********
consensus_3721#0 ACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAAT 673
consensus_3721#1 ACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAA-T 624
***************************** **** *********************** *
consensus_3721#0 ACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCA 733
consensus_3721#1 ACGAGAGGAAA--------AAAAAAAAAAATAAGGGGGGATCT----------------- 659
** * ****** ******* ** ** * **
consensus_3721#0 AAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA 779
consensus_3721#1 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||