These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [CCGGCAGGAAGCTGTTCCAAACCTACCCGGGCCCACTGGTGAAGGGTGTGACGCATAAAAAGTCCGTCATCGAGTTCTGCGAGGAGCAACTACGCCACGGCCCACCGTACAGTGGTGCGCTGGCGCTGATCAAATCGCGGGGCAACTCGATCAACAGTTTGCACTCGTCATCGCTTGCCGCTGGCGCTAACCGCAGCTCGTTCGCTTTGCTGTGGAACTACATCATACTGCTGCTGAGACAGAATGGCACGTTCGTCGGTACCGATATCTCCCGAGCTGCTGATGCAAAACAAGGAAAAGTATCCCGTCTCGAGGCGATGCAGACCAGCGTGGGCCGGGTCGGGCCACATTTAGCGGGGCGCAAACTCGTCACTTTTCGCATGCCCGATGCGGGAAGGCCGATTGCGCCGCCAGGATGGGTCCAGGAAAAGCGAAGGAAGCGGGCGGCCCGATTGCTCCCGGCGAAAGCAGACGATGTGGGCTAAGGATACATCCCGCCCCAGGACGTGGCACCGAAAAGCACTCACCGTAGCAAGAGATTACGGGACAAGTTCCGGAACTATCTGCTGTACGGCAACATTGGCGAAGCGCTCGAGTGGGCCACCGAGCACAACCTGTGGGGCCACGCACTGTTCCTCGCCTCCAAGGTGGACTCGCGGCAGCACGCGAACGTGATG] [+] EMBL BM611727 [CCGGCAGGAAGCTGTTCCAAACCTACCCGGGCCCACTGGTGAAGGGTGTGACGCATAAAAAGTCCGTCATCGAGTTCTGCGAGGAGCAACTACGCCACGGCCCACCGTACAGTGGTGCGCTGGCGCTGATCAAATCGCGGGGCAACTCGATCAACAGTTTGCACTCGTCATCGCTTGCCGCTGGCGCTAACCGCAGCTCGTTCGCTTTGCTGTGGAACTACATCATACTGCTGCTGAGACAGAATGGCACGTTCGTCGGTACCGATATCTCCCGAGCTGCTGATGCAAAACAAGGAAAAGTATCCCGTCTCGAGGCGATGCAGACCAGCGTGGGCCGGGTCGGGCCACATTTAGCGGGGCGCAAACTCGTCACTTTTCGCATGCCCGATGCGGGAAGGCCGATTGCGCCGCCAGGATGGGTCCAGGAAAAGCGAAGGAAGCGGGCGGCCCGATTGCTCCCGGCGAAAGCAGACGATGTGGGCTAAGGATACATCCCGCCCCAGGACGTGGCACCGAAAAGCACTCACCGTAGCAAGAGATTACGGGACAAGTTCCGGAACTATCTGCTGTACGGCAACATTGGCGAAGCGCTCGAGTGGGCCACCGAGCACAACCTGTGGGGCCACGCACTGTTCCTCGCCTCCAAGGTGGACTCGCGGCAGCACGCGAACGTGATG] consensusID : consensus_3729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CAGAATCCCCCGAGTATTGTGTGTGGCGGTTTGTCATTTCTNACCAAGAACCGGCTCACGATGAACGGAATGGCGGACACGGTGAAAATATACAGTCTAGCATATAATGAGCGCTAGCAGGAAGCTGTTCCAAACCTATCCGGGGCCCACTGGTGAAGGGTGTGACGCATAAACAAGTCCGTCATCTGAATTCTGGGAGGANCAACTACGCCACGGCCACGTACAGTGGTGCTGCTTGCGCTGATCAAATCGCGGGNGCAACNTCGATCAATAAGTTTGCAGCGTCGTACATCGACTTGCCCGCCGGCAGCCAAACCGCAGTTCGTTCGGTTTTGCTGTGGGAAACTNACATCAATACTGTGGGCTTGACGATACCACTAAATGCGGGNCGGTTCGATCAGGTACCCGAGATATCTCCCGGAGGNCTTGCCTTGAATGCTCAAACACCAAACGGGACAAGGAGTTAATCCCGGCTACCGANGGNAGAATTGTCACNAACCCAAACGTTGGACCCCGGATCCGAGGCCAAAGCAATTTTANGCGGGGCGGCAAACTCAGGTCACCTTGGTCAGACCAATCCCCCGAANAGGGNGAAGG] [+] EMBL AL692996 [CAGAATCCCCCGAGTATTGTGTGTGGCGGTTTGTCATTTCTNACCAAGAACCGGCTCACGATGAACGGAATGGCGGACACGGTGAAAATATACAGTCTAGCATATAATGAGCGCTAGCAGGAAGCTGTTCCAAACCTATCCGGGGCCCACTGGTGAAGGGTGTGACGCATAAACAAGTCCGTCATCTGAATTCTGGGAGGANCAACTACGCCACGGCCACGTACAGTGGTGCTGCTTGCGCTGATCAAATCGCGGGNGCAACNTCGATCAATAAGTTTGCAGCGTCGTACATCGACTTGCCCGCCGGCAGCCAAACCGCAGTTCGTTCGGTTTTGCTGTGGGAAACTNACATCAATACTGTGGGCTTGACGATACCACTAAATGCGGGNCGGTTCGATCAGGTACCCGAGATATCTCCCGGAGGNCTTGCCTTGAATGCTCAAACACCAAACGGGACAAGGAGTTAATCCCGGCTACCGANGGNAGAATTGTCACNAACCCAAACGTTGGACCCCGGATCCGAGGCCAAAGCAATTTTANGCGGGGCGGCAAACTCAGGTCACCTTGGTCAGACCAATCCCCCGAANAGGGNGAAGG] consensusID : consensus_3729#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [CCGCGCGAATCGGTCCACTCCGGTCGCAGCTCGGCCAACGACAAGGAACGAATCGACCAAATTGATGCGTCCGCCATCAAGCAGGACGCTACTGCCGAGCTGTCGATGATGGAACCGGAACGCCTGACGCCTCGCAAGTTCCCCGAAATTCATCCCATCGTCAGTGTGTCGGCCGGTTTGCTCATTTCCACCAAGAACCGACTCACAATGAACGGAATGGCGGACACGGTGAAAATATACAGTC] [+] EMBL BM611437 [CCGCGCGAATCGGTCCACTCCGGTCGCAGCTCGGCCAACGACAAGGAACGAATCGACCAAATTGATGCGTCCGCCATCAAGCAGGACGCTACTGCCGAGCTGTCGATGATGGAACCGGAACGCCTGACGCCTCGCAAGTTCCCCGAAATTCATCCCATCGTCAGTGTGTCGGCCGGTTTGCTCATTTCCACCAAGAACCGACTCACAATGAACGGAATGGCGGACACGGTGAAAATATACAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3729#0 ------------------------------------------------------------ consensus_3729#1 CAGAATCCCCCGAGTATTGTGTGTGGCGGTTTGTCATTTCTNACCAAGAACCGGCTCACG 60 consensus_3729#2 ------------------------------------------------------------ consensus_3729#0 -----------------------------------------------------CCGGCAG 7 consensus_3729#1 ATGAACGGAATGGCGGACACGGTGAAAATATACAGTCTAGCATATAATGAGCGCTAGCAG 120 consensus_3729#2 --------------------------------------------------CCGCGCGAAT 10 * * * consensus_3729#0 GAAGCTGTTCCAAACCTACCCGGG-CCCACTGGTGAAGGGTGTGACGCATAAA-AAGTCC 65 consensus_3729#1 GAAGCTGTTCCAAACCTATCCGGGGCCCACTGGTGAAGGGTGTGACGCATAAACAAGTCC 180 consensus_3729#2 CGGTCCACTCCGGTCGCAGCTCGG--CCAACGACAAGGAACGAATCGACCAAATTGATGC 68 * *** * * * ** *** * * * * ** *** * * consensus_3729#0 GTCATC-GAGTTCTGCGAGGAGCAACTACGCCACGGCCCACCGTACAGTGGTGC-GCTGG 123 consensus_3729#1 GTCATCTGAATTCTGGGAGGANCAACTACGCCACGGCCA--CGTACAGTGGTGCTGCTTG 238 consensus_3729#2 GTCCGC--CATCAAGCAGGACGCTACTGCCGAGCTGTCG-----ATGATGGAACCGG-AA 120 *** * * * * * *** * * * * * *** * * consensus_3729#0 CGCTGATCAAATCGCGGGG-CAACT-CGATCAACA-GTTTGCAC--TCGT-CATCG-CTT 176 consensus_3729#1 CGCTGATCAAATCGCGGGNGCAACNTCGATCAATAAGTTTGCAGCGTCGTACATCGACTT 298 consensus_3729#2 CGCCTGACGCCTCGCAAGTTCCCCGAAATTCATCCCATCGTCAGTGT-GTCGGCCGGTTT 179 *** * **** * * * *** * ** * ** ** ** consensus_3729#0 GCC-GCTGGCG---CTAACCGCAGCTCGTTCG-CTTTGCTGTGGAA---CTACATCA-TA 227 consensus_3729#1 GCCCGCCGGCAGC-CAAACCGCAGTTCGTTCGGTTTTGCTGTGGGAAACTNACATCAATA 357 consensus_3729#2 GCTCATTTCCACCAAGAACCGACTCACAATGAACGGAATGGCGGACACGGTGAAAATATA 239 ** * ***** * * * ** * ** consensus_3729#0 CTGCTGCTGAGACAGAATGGCACGTTCGTCGGTACCGATATCTCCCGAGCTGCTGATGCA 287 consensus_3729#1 CTGTGGGCTTGAC--GATACCAC-TAAATGCGGGNCGGT-TCGATCAGGTACCCGAGATA 413 consensus_3729#2 CAGTC------------------------------------------------------- 244 * * consensus_3729#0 AAACAAGGAAAAGTATCCCGTCTCGAGGCGATGCAGACCAGCGTGGGCCGGGT-CGGGCC 346 consensus_3729#1 TCTCCCGGAGGN----CTTGCCTTGAATGCTCAAACACCAAACGGGACAAGGAGTTAATC 469 consensus_3729#2 ------------------------------------------------------------ consensus_3729#0 ACATTTAGCGGGGCGCAAACTCGTCACTTTTCGCATGCCCGATGCGGGAAGGCCGATTGC 406 consensus_3729#1 CCGGCTACCGANG-GNAGAATTGTCACN------AACCCAAACGTTGGACC-CCGGATCC 521 consensus_3729#2 ------------------------------------------------------------ consensus_3729#0 GCCGCCAGGATGGGTCCAGGAAAAGCGAAGGAAGCGGGCGGCCCGATTGCTCCCGGCGAA 466 consensus_3729#1 GAGGCCAAAGCAATTTTANGCGGGGCGGCAAACTCAGGTCACC---TTGGTC--AGACCA 576 consensus_3729#2 ------------------------------------------------------------ consensus_3729#0 AGCAGACGATGTGGGCTAAGGATACATCCCGCCCCAGGACGTGGCACCGAAAAGCACTCA 526 consensus_3729#1 ATCCCCCGAANAGGGNGAAGG--------------------------------------- 597 consensus_3729#2 ------------------------------------------------------------ consensus_3729#0 CCGTAGCAAGAGATTACGGGACAAGTTCCGGAACTATCTGCTGTACGGCAACATTGGCGA 586 consensus_3729#1 ------------------------------------------------------------ consensus_3729#2 ------------------------------------------------------------ consensus_3729#0 AGCGCTCGAGTGGGCCACCGAGCACAACCTGTGGGGCCACGCACTGTTCCTCGCCTCCAA 646 consensus_3729#1 ------------------------------------------------------------ consensus_3729#2 ------------------------------------------------------------ consensus_3729#0 GGTGGACTCGCGGCAGCACGCGAACGTGATG 677 consensus_3729#1 ------------------------------- consensus_3729#2 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||