cluster # 3729

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Anopheles gambiae
cluster # 3729 cluster # 3729 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3729#0 length = 677 sequences # 1

consensus_3729#1 length = 597 sequences # 1
consensus_3729#2 length = 244 sequences # 1

consensusID : consensus_3729#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [CCGGCAGGAAGCTGTTCCAAACCTACCCGGGCCCACTGGTGAAGGGTGTGACGCATAAAAAGTCCGTCATCGAGTTCTGCGAGGAGCAACTACGCCACGGCCCACCGTACAGTGGTGCGCTGGCGCTGATCAAATCGCGGGGCAACTCGATCAACAGTTTGCACTCGTCATCGCTTGCCGCTGGCGCTAACCGCAGCTCGTTCGCTTTGCTGTGGAACTACATCATACTGCTGCTGAGACAGAATGGCACGTTCGTCGGTACCGATATCTCCCGAGCTGCTGATGCAAAACAAGGAAAAGTATCCCGTCTCGAGGCGATGCAGACCAGCGTGGGCCGGGTCGGGCCACATTTAGCGGGGCGCAAACTCGTCACTTTTCGCATGCCCGATGCGGGAAGGCCGATTGCGCCGCCAGGATGGGTCCAGGAAAAGCGAAGGAAGCGGGCGGCCCGATTGCTCCCGGCGAAAGCAGACGATGTGGGCTAAGGATACATCCCGCCCCAGGACGTGGCACCGAAAAGCACTCACCGTAGCAAGAGATTACGGGACAAGTTCCGGAACTATCTGCTGTACGGCAACATTGGCGAAGCGCTCGAGTGGGCCACCGAGCACAACCTGTGGGGCCACGCACTGTTCCTCGCCTCCAAGGTGGACTCGCGGCAGCACGCGAACGTGATG]

[+] EMBL BM611727             [CCGGCAGGAAGCTGTTCCAAACCTACCCGGGCCCACTGGTGAAGGGTGTGACGCATAAAAAGTCCGTCATCGAGTTCTGCGAGGAGCAACTACGCCACGGCCCACCGTACAGTGGTGCGCTGGCGCTGATCAAATCGCGGGGCAACTCGATCAACAGTTTGCACTCGTCATCGCTTGCCGCTGGCGCTAACCGCAGCTCGTTCGCTTTGCTGTGGAACTACATCATACTGCTGCTGAGACAGAATGGCACGTTCGTCGGTACCGATATCTCCCGAGCTGCTGATGCAAAACAAGGAAAAGTATCCCGTCTCGAGGCGATGCAGACCAGCGTGGGCCGGGTCGGGCCACATTTAGCGGGGCGCAAACTCGTCACTTTTCGCATGCCCGATGCGGGAAGGCCGATTGCGCCGCCAGGATGGGTCCAGGAAAAGCGAAGGAAGCGGGCGGCCCGATTGCTCCCGGCGAAAGCAGACGATGTGGGCTAAGGATACATCCCGCCCCAGGACGTGGCACCGAAAAGCACTCACCGTAGCAAGAGATTACGGGACAAGTTCCGGAACTATCTGCTGTACGGCAACATTGGCGAAGCGCTCGAGTGGGCCACCGAGCACAACCTGTGGGGCCACGCACTGTTCCTCGCCTCCAAGGTGGACTCGCGGCAGCACGCGAACGTGATG]




>consensus_3729#0
CCGGCAGGAAGCTGTTCCAAACCTACCCGGGCCCACTGGTGAAGGGTGTGACGCATAAAA
AGTCCGTCATCGAGTTCTGCGAGGAGCAACTACGCCACGGCCCACCGTACAGTGGTGCGC
TGGCGCTGATCAAATCGCGGGGCAACTCGATCAACAGTTTGCACTCGTCATCGCTTGCCG
CTGGCGCTAACCGCAGCTCGTTCGCTTTGCTGTGGAACTACATCATACTGCTGCTGAGAC
AGAATGGCACGTTCGTCGGTACCGATATCTCCCGAGCTGCTGATGCAAAACAAGGAAAAG
TATCCCGTCTCGAGGCGATGCAGACCAGCGTGGGCCGGGTCGGGCCACATTTAGCGGGGC
GCAAACTCGTCACTTTTCGCATGCCCGATGCGGGAAGGCCGATTGCGCCGCCAGGATGGG
TCCAGGAAAAGCGAAGGAAGCGGGCGGCCCGATTGCTCCCGGCGAAAGCAGACGATGTGG
GCTAAGGATACATCCCGCCCCAGGACGTGGCACCGAAAAGCACTCACCGTAGCAAGAGAT
TACGGGACAAGTTCCGGAACTATCTGCTGTACGGCAACATTGGCGAAGCGCTCGAGTGGG
CCACCGAGCACAACCTGTGGGGCCACGCACTGTTCCTCGCCTCCAAGGTGGACTCGCGGC
AGCACGCGAACGTGATG

consensusID : consensus_3729#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CAGAATCCCCCGAGTATTGTGTGTGGCGGTTTGTCATTTCTNACCAAGAACCGGCTCACGATGAACGGAATGGCGGACACGGTGAAAATATACAGTCTAGCATATAATGAGCGCTAGCAGGAAGCTGTTCCAAACCTATCCGGGGCCCACTGGTGAAGGGTGTGACGCATAAACAAGTCCGTCATCTGAATTCTGGGAGGANCAACTACGCCACGGCCACGTACAGTGGTGCTGCTTGCGCTGATCAAATCGCGGGNGCAACNTCGATCAATAAGTTTGCAGCGTCGTACATCGACTTGCCCGCCGGCAGCCAAACCGCAGTTCGTTCGGTTTTGCTGTGGGAAACTNACATCAATACTGTGGGCTTGACGATACCACTAAATGCGGGNCGGTTCGATCAGGTACCCGAGATATCTCCCGGAGGNCTTGCCTTGAATGCTCAAACACCAAACGGGACAAGGAGTTAATCCCGGCTACCGANGGNAGAATTGTCACNAACCCAAACGTTGGACCCCGGATCCGAGGCCAAAGCAATTTTANGCGGGGCGGCAAACTCAGGTCACCTTGGTCAGACCAATCCCCCGAANAGGGNGAAGG]

[+] EMBL AL692996             [CAGAATCCCCCGAGTATTGTGTGTGGCGGTTTGTCATTTCTNACCAAGAACCGGCTCACGATGAACGGAATGGCGGACACGGTGAAAATATACAGTCTAGCATATAATGAGCGCTAGCAGGAAGCTGTTCCAAACCTATCCGGGGCCCACTGGTGAAGGGTGTGACGCATAAACAAGTCCGTCATCTGAATTCTGGGAGGANCAACTACGCCACGGCCACGTACAGTGGTGCTGCTTGCGCTGATCAAATCGCGGGNGCAACNTCGATCAATAAGTTTGCAGCGTCGTACATCGACTTGCCCGCCGGCAGCCAAACCGCAGTTCGTTCGGTTTTGCTGTGGGAAACTNACATCAATACTGTGGGCTTGACGATACCACTAAATGCGGGNCGGTTCGATCAGGTACCCGAGATATCTCCCGGAGGNCTTGCCTTGAATGCTCAAACACCAAACGGGACAAGGAGTTAATCCCGGCTACCGANGGNAGAATTGTCACNAACCCAAACGTTGGACCCCGGATCCGAGGCCAAAGCAATTTTANGCGGGGCGGCAAACTCAGGTCACCTTGGTCAGACCAATCCCCCGAANAGGGNGAAGG]




>consensus_3729#1
CAGAATCCCCCGAGTATTGTGTGTGGCGGTTTGTCATTTCTNACCAAGAACCGGCTCACG
ATGAACGGAATGGCGGACACGGTGAAAATATACAGTCTAGCATATAATGAGCGCTAGCAG
GAAGCTGTTCCAAACCTATCCGGGGCCCACTGGTGAAGGGTGTGACGCATAAACAAGTCC
GTCATCTGAATTCTGGGAGGANCAACTACGCCACGGCCACGTACAGTGGTGCTGCTTGCG
CTGATCAAATCGCGGGNGCAACNTCGATCAATAAGTTTGCAGCGTCGTACATCGACTTGC
CCGCCGGCAGCCAAACCGCAGTTCGTTCGGTTTTGCTGTGGGAAACTNACATCAATACTG
TGGGCTTGACGATACCACTAAATGCGGGNCGGTTCGATCAGGTACCCGAGATATCTCCCG
GAGGNCTTGCCTTGAATGCTCAAACACCAAACGGGACAAGGAGTTAATCCCGGCTACCGA
NGGNAGAATTGTCACNAACCCAAACGTTGGACCCCGGATCCGAGGCCAAAGCAATTTTAN
GCGGGGCGGCAAACTCAGGTCACCTTGGTCAGACCAATCCCCCGAANAGGGNGAAGG

consensusID : consensus_3729#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [CCGCGCGAATCGGTCCACTCCGGTCGCAGCTCGGCCAACGACAAGGAACGAATCGACCAAATTGATGCGTCCGCCATCAAGCAGGACGCTACTGCCGAGCTGTCGATGATGGAACCGGAACGCCTGACGCCTCGCAAGTTCCCCGAAATTCATCCCATCGTCAGTGTGTCGGCCGGTTTGCTCATTTCCACCAAGAACCGACTCACAATGAACGGAATGGCGGACACGGTGAAAATATACAGTC]

[+] EMBL BM611437             [CCGCGCGAATCGGTCCACTCCGGTCGCAGCTCGGCCAACGACAAGGAACGAATCGACCAAATTGATGCGTCCGCCATCAAGCAGGACGCTACTGCCGAGCTGTCGATGATGGAACCGGAACGCCTGACGCCTCGCAAGTTCCCCGAAATTCATCCCATCGTCAGTGTGTCGGCCGGTTTGCTCATTTCCACCAAGAACCGACTCACAATGAACGGAATGGCGGACACGGTGAAAATATACAGTC]




>consensus_3729#2
CCGCGCGAATCGGTCCACTCCGGTCGCAGCTCGGCCAACGACAAGGAACGAATCGACCAA
ATTGATGCGTCCGCCATCAAGCAGGACGCTACTGCCGAGCTGTCGATGATGGAACCGGAA
CGCCTGACGCCTCGCAAGTTCCCCGAAATTCATCCCATCGTCAGTGTGTCGGCCGGTTTG
CTCATTTCCACCAAGAACCGACTCACAATGAACGGAATGGCGGACACGGTGAAAATATAC
AGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3729#0      ------------------------------------------------------------
consensus_3729#1      CAGAATCCCCCGAGTATTGTGTGTGGCGGTTTGTCATTTCTNACCAAGAACCGGCTCACG 60
consensus_3729#2      ------------------------------------------------------------
                                                                                  

consensus_3729#0      -----------------------------------------------------CCGGCAG 7
consensus_3729#1      ATGAACGGAATGGCGGACACGGTGAAAATATACAGTCTAGCATATAATGAGCGCTAGCAG 120
consensus_3729#2      --------------------------------------------------CCGCGCGAAT 10
                                                                           *  * * 

consensus_3729#0      GAAGCTGTTCCAAACCTACCCGGG-CCCACTGGTGAAGGGTGTGACGCATAAA-AAGTCC 65
consensus_3729#1      GAAGCTGTTCCAAACCTATCCGGGGCCCACTGGTGAAGGGTGTGACGCATAAACAAGTCC 180
consensus_3729#2      CGGTCCACTCCGGTCGCAGCTCGG--CCAACGACAAGGAACGAATCGACCAAATTGATGC 68
                          *   ***   *  * *  **  ***  *   * *   *   **   ***    * *

consensus_3729#0      GTCATC-GAGTTCTGCGAGGAGCAACTACGCCACGGCCCACCGTACAGTGGTGC-GCTGG 123
consensus_3729#1      GTCATCTGAATTCTGGGAGGANCAACTACGCCACGGCCA--CGTACAGTGGTGCTGCTTG 238
consensus_3729#2      GTCCGC--CATCAAGCAGGACGCTACTGCCGAGCTGTCG-----ATGATGGAACCGG-AA 120
                      ***  *    *   *   *   * *** *    * * *      *   ***  * *    

consensus_3729#0      CGCTGATCAAATCGCGGGG-CAACT-CGATCAACA-GTTTGCAC--TCGT-CATCG-CTT 176
consensus_3729#1      CGCTGATCAAATCGCGGGNGCAACNTCGATCAATAAGTTTGCAGCGTCGTACATCGACTT 298
consensus_3729#2      CGCCTGACGCCTCGCAAGTTCCCCGAAATTCATCCCATCGTCAGTGT-GTCGGCCGGTTT 179
                      ***    *   ****  *  *  *     ***     *   **   * **    **  **

consensus_3729#0      GCC-GCTGGCG---CTAACCGCAGCTCGTTCG-CTTTGCTGTGGAA---CTACATCA-TA 227
consensus_3729#1      GCCCGCCGGCAGC-CAAACCGCAGTTCGTTCGGTTTTGCTGTGGGAAACTNACATCAATA 357
consensus_3729#2      GCTCATTTCCACCAAGAACCGACTCACAATGAACGGAATGGCGGACACGGTGAAAATATA 239
                      **       *      *****     *  *          * **         *    **

consensus_3729#0      CTGCTGCTGAGACAGAATGGCACGTTCGTCGGTACCGATATCTCCCGAGCTGCTGATGCA 287
consensus_3729#1      CTGTGGGCTTGAC--GATACCAC-TAAATGCGGGNCGGT-TCGATCAGGTACCCGAGATA 413
consensus_3729#2      CAGTC------------------------------------------------------- 244
                      * *                                                         

consensus_3729#0      AAACAAGGAAAAGTATCCCGTCTCGAGGCGATGCAGACCAGCGTGGGCCGGGT-CGGGCC 346
consensus_3729#1      TCTCCCGGAGGN----CTTGCCTTGAATGCTCAAACACCAAACGGGACAAGGAGTTAATC 469
consensus_3729#2      ------------------------------------------------------------
                                                                                  

consensus_3729#0      ACATTTAGCGGGGCGCAAACTCGTCACTTTTCGCATGCCCGATGCGGGAAGGCCGATTGC 406
consensus_3729#1      CCGGCTACCGANG-GNAGAATTGTCACN------AACCCAAACGTTGGACC-CCGGATCC 521
consensus_3729#2      ------------------------------------------------------------
                                                                                  

consensus_3729#0      GCCGCCAGGATGGGTCCAGGAAAAGCGAAGGAAGCGGGCGGCCCGATTGCTCCCGGCGAA 466
consensus_3729#1      GAGGCCAAAGCAATTTTANGCGGGGCGGCAAACTCAGGTCACC---TTGGTC--AGACCA 576
consensus_3729#2      ------------------------------------------------------------
                                                                                  

consensus_3729#0      AGCAGACGATGTGGGCTAAGGATACATCCCGCCCCAGGACGTGGCACCGAAAAGCACTCA 526
consensus_3729#1      ATCCCCCGAANAGGGNGAAGG--------------------------------------- 597
consensus_3729#2      ------------------------------------------------------------
                                                                                  

consensus_3729#0      CCGTAGCAAGAGATTACGGGACAAGTTCCGGAACTATCTGCTGTACGGCAACATTGGCGA 586
consensus_3729#1      ------------------------------------------------------------
consensus_3729#2      ------------------------------------------------------------
                                                                                  

consensus_3729#0      AGCGCTCGAGTGGGCCACCGAGCACAACCTGTGGGGCCACGCACTGTTCCTCGCCTCCAA 646
consensus_3729#1      ------------------------------------------------------------
consensus_3729#2      ------------------------------------------------------------
                                                                                  

consensus_3729#0      GGTGGACTCGCGGCAGCACGCGAACGTGATG 677
consensus_3729#1      -------------------------------
consensus_3729#2      -------------------------------