cluster # 3730

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Anopheles gambiae
cluster # 3730 cluster # 3730 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3730#0 length = 858 sequences # 2

consensus_3730#1 length = 578 sequences # 1

consensusID : consensus_3730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 858
fasta sequence

                              [ATTCGGCACGAGGAGTGTNATAATGTGTGTGTGTGTATAATTTACTAAGGACCACATGTATTCCCTCAATATCCGGCCCCCGACGTGCTTTGCTTTGCTCTGTCTGATTGTTATTTAAGTTTAGTTGTTCACGTTGTCGTTCCTTCGTCGGGTACTGATTTCGAATGGTGCTAGAACGATTTCATATGCCATCTAAGCACCGATAGGAAGCCAGTGCCCGTCAGGATTATGCCCCTGCCCCGCTATACGCCCGCTAGGGAATGTTGCTAGCCAGAAGTGCATCCCCAAGAGAGGAACATGAATGTAACTTCAAAGTGCACTTGTTGATGATGTATAGTATGCAAGTACAGATTTGTTCTATAAGAACGCACACACACACAT-ACACT-CGC-AGAAGTA-TGT--CTAACGGGAAGGAGTTTTAATAG-CACCGAACACACACACAC-GCACACAC-AAACAC--AT-ACACTTATTTTTTAATTTGTAATGTTTAAGCGAAGGAGAAGCTAGATGTTTGTTTTAATCGAGAAAAAAACTCAATCCCCTCCAGAGAAAAGCAATGAAATTGAAAAAAAAAATCAAAATTTTTATACGAGTTCCACACACACAACGGCACACACGTGTTCGTGGTGGAACAAAGCGGCAAATGCAAACGGAAATGTTTTTTTTTTTTTAAACTATATTTAGCCATGTAAGTCAAACTGAAATCAAACTATGTAACGTTATGAAATTATTAAGCCCATTTACGAGCGCAGATGTTTGTGTTTAGAGACTGCTAGGAGATGATCTAGGATCTAGGCGAGCAGGGAAGGCTCTCTCGATCGAGCAGTAAAGGAGAGGCAAACGCTAAACACGATGATACATATT]

[+] EMBL BX625972             [ATTCGGCACGAGGAGTGTNATAATGTGTGTGTGTGTATAATTTACTAAGGACCACATGTATTCCCTCAATATCCGGCCCCCGACGTGCTTTGCTTTGCTCTGTCTGATTGTTATTTAAGTTTAGTTGTTCACGTTGTCGTTCCTTCGTCGGGTACTGATTTCGAATGGTGCTAGAACGATTTCATATGCCATCTAAGCACCGATAGGAAGCCAGTGCCCGTCAGGATTATGCCCCTGCCCCGCTATACGCCCGCTAGGGAATGTTGCTAGCCAGAAGTGCATCCCCAAGAGAGGAACATGAATGTAACTTCAAAGTGCACTTGTTGATGATGTATAGTATGCAAGTACAGATTTGTTCTATAAGAACGCACACACACACAT ACACT CGC AGAAGTA TGT  CTAACGGGAAGGAGTTTTAATAG CACCGAACACACACACAC GCACACAC AAACAC  AT ACACTTATTTTTTAATTTGTAATGTTTAAGCGAAGGAGAAGCTAGATGTTTGTTTTAATCGAGAAAAAAACTCAATCCCCTCCAGAGAAAAGCAATGAAATTGAAAAAAAAAATCAAAATTTTTATACGAGTTCCACACACACAACGGCACACACGTGTTCGTGGTGGAACAAAGCGGCAAATGCAAACGGAAATGTTTTTTTTTTTTTAAACTATATTTAGCCATGTAAGTCAAACTGAAATCAAACTATGTAACGTTATGAAATTATTAAGCCCATTTACGAGCGCAGATGTTTGTGTTTAGAGACTGCTAGGAGATGATCTAGGATCTAGGCGAGCAGGGAAGGCTCTCTCGATCGAGCAGTAAAGGAGAGGCAAACGCTAAACACGATGATACATATT]
[+] EMBL AL693028             [     agatcccGAG GTTATAATGTGTGTGTG    TAATGTACT AGGA CACATGTATTCCCTCAATATCCGGCCCCCAACGTGCTTTGCTTTGCTCTGTCTGATTGTTATTTAAGTTTAGTTGTTCACGTTGTCGTTCCTTCGTCGGGTACTGATTTCGAATGGTGCTAGAACGATTTCATATGCCATCTAAGCACCGATAGGAAGCCAGTGCCCGTCAGGATTATGCCCCTGTCCCGCTATACGCCCGCTAGGGAATGTTGCTAGCCAGAAGTGCATCCCCAAGAGAGGAACATGAATGTAACTTCAAAGTGCACTTGTTGATGATGTATAGTATGCAAGTACAGATTTGTTCTATAAGAACGCACACACACACATAACACTCCGCAAGAAGTATTGTCCCAAACGGGAAGGAGTTTTAATAGCCACCGAACACACACACACGGCACACACAAAACACCAATAACAC                                                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_3730#0
ATTCGGCACGAGGAGTGTNATAATGTGTGTGTGTGTATAATTTACTAAGGACCACATGTA
TTCCCTCAATATCCGGCCCCCGACGTGCTTTGCTTTGCTCTGTCTGATTGTTATTTAAGT
TTAGTTGTTCACGTTGTCGTTCCTTCGTCGGGTACTGATTTCGAATGGTGCTAGAACGAT
TTCATATGCCATCTAAGCACCGATAGGAAGCCAGTGCCCGTCAGGATTATGCCCCTGCCC
CGCTATACGCCCGCTAGGGAATGTTGCTAGCCAGAAGTGCATCCCCAAGAGAGGAACATG
AATGTAACTTCAAAGTGCACTTGTTGATGATGTATAGTATGCAAGTACAGATTTGTTCTA
TAAGAACGCACACACACACATACACTCGCAGAAGTATGTCTAACGGGAAGGAGTTTTAAT
AGCACCGAACACACACACACGCACACACAAACACATACACTTATTTTTTAATTTGTAATG
TTTAAGCGAAGGAGAAGCTAGATGTTTGTTTTAATCGAGAAAAAAACTCAATCCCCTCCA
GAGAAAAGCAATGAAATTGAAAAAAAAAATCAAAATTTTTATACGAGTTCCACACACACA
ACGGCACACACGTGTTCGTGGTGGAACAAAGCGGCAAATGCAAACGGAAATGTTTTTTTT
TTTTTAAACTATATTTAGCCATGTAAGTCAAACTGAAATCAAACTATGTAACGTTATGAA
ATTATTAAGCCCATTTACGAGCGCAGATGTTTGTGTTTAGAGACTGCTAGGAGATGATCT
AGGATCTAGGCGAGCAGGGAAGGCTCTCTCGATCGAGCAGTAAAGGAGAGGCAAACGCTA
AACACGATGATACATATT

consensusID : consensus_3730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [CCCCGNGGTTTAATACTGGGCGGTTTACTGTCACCGAAAGATTGTTGAAGGCAGTGAAGCTACGATTGATCGTAATTCTCGTGCGGCTCGAAGTGATATAGCAAACTATGATGAAAACGAACCGGATGTGTCAAAGCGAATTGTTTTGCAGCTTCGCGTTGGTGTTTTATTTATTAATTCCTTTATCCTTCGATTCAGAAACCCTTTAAGCGCATAGGTTGTAGGGTTTATACTAATCTTGCATAATCGTGTACTGCACAAGTGCGGTCACAAGTCCTATAGAATGTAGTTTGCANAGCAAGCAAACAGCAAAAACAGGCAAGCGATCTCCAAAACCTCTTCCTTTCGTACTTGTATGTGTGAGTAGTGTGCGTGTGTTTATAGTAGTGTAATAATGTGTGTGTGTGTATAATTTACTAAGGACCACATGTATTCCCTCAATATCCGGACCCCGACGATGCTTTGCTTTGCTCTGTACTGATGTANATNTATAAGTATNAGTTAGTACACGTATAGTCGTATACCTTCGTACGGGTACTGATNTATACAGAATGGTAGCTAGAACGATTNTACATATG]

[+] EMBL AL693230             [CCCCGNGGTTTAATACTGGGCGGTTTACTGTCACCGAAAGATTGTTGAAGGCAGTGAAGCTACGATTGATCGTAATTCTCGTGCGGCTCGAAGTGATATAGCAAACTATGATGAAAACGAACCGGATGTGTCAAAGCGAATTGTTTTGCAGCTTCGCGTTGGTGTTTTATTTATTAATTCCTTTATCCTTCGATTCAGAAACCCTTTAAGCGCATAGGTTGTAGGGTTTATACTAATCTTGCATAATCGTGTACTGCACAAGTGCGGTCACAAGTCCTATAGAATGTAGTTTGCANAGCAAGCAAACAGCAAAAACAGGCAAGCGATCTCCAAAACCTCTTCCTTTCGTACTTGTATGTGTGAGTAGTGTGCGTGTGTTTATAGTAGTGTAATAATGTGTGTGTGTGTATAATTTACTAAGGACCACATGTATTCCCTCAATATCCGGACCCCGACGATGCTTTGCTTTGCTCTGTACTGATGTANATNTATAAGTATNAGTTAGTACACGTATAGTCGTATACCTTCGTACGGGTACTGATNTATACAGAATGGTAGCTAGAACGATTNTACATATG]




>consensus_3730#1
CCCCGNGGTTTAATACTGGGCGGTTTACTGTCACCGAAAGATTGTTGAAGGCAGTGAAGC
TACGATTGATCGTAATTCTCGTGCGGCTCGAAGTGATATAGCAAACTATGATGAAAACGA
ACCGGATGTGTCAAAGCGAATTGTTTTGCAGCTTCGCGTTGGTGTTTTATTTATTAATTC
CTTTATCCTTCGATTCAGAAACCCTTTAAGCGCATAGGTTGTAGGGTTTATACTAATCTT
GCATAATCGTGTACTGCACAAGTGCGGTCACAAGTCCTATAGAATGTAGTTTGCANAGCA
AGCAAACAGCAAAAACAGGCAAGCGATCTCCAAAACCTCTTCCTTTCGTACTTGTATGTG
TGAGTAGTGTGCGTGTGTTTATAGTAGTGTAATAATGTGTGTGTGTGTATAATTTACTAA
GGACCACATGTATTCCCTCAATATCCGGACCCCGACGATGCTTTGCTTTGCTCTGTACTG
ATGTANATNTATAAGTATNAGTTAGTACACGTATAGTCGTATACCTTCGTACGGGTACTG
ATNTATACAGAATGGTAGCTAGAACGATTNTACATATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3730#0      ATTCGGCACGAGGAGTGTNATAATGTGTGTGTGTGTATAATTTACTAAGGACCACATGTA 60
consensus_3730#1      ------------------------------------------------------------
                                                                                  

consensus_3730#0      TTCCCTCAATATCCGGCCCCCGACGTGCTTTGCTTTGCTCTGTCTGATTGTTATTTAAGT 120
consensus_3730#1      ------------------------------------------------------------
                                                                                  

consensus_3730#0      TTAGTTGTTCACGTTGTCGTTCCTTCGTCGGGTACTGATTTCGAATGGTGCTAGAACGAT 180
consensus_3730#1      --------------------------------CCCCGNGGTTTAATACT----GGGCGGT 24
                                                        * *   *  ***  *    *  ** *

consensus_3730#0      TTCATATGCCATCTAAGCACCGATAGGAAGCCAGTGCCCGTCAGGATTATGCCCCTGCCC 240
consensus_3730#1      TTACTGT--CACCGAAAGATTGTT--GAAGGCAGTGAA-GCTACGATTGATCGTAATTCT 79
                      **  * *  ** * **  *  * *  **** *****   *  * ****   *      * 

consensus_3730#0      CGCTATACGCCCGCTAGGGAATGTTGCTAGCCAGAAGTGCATCCCCAAGAGAGGAACATG 300
consensus_3730#1      CG---TGCGGCT-CGAAGTGATATAGCAAACTATGATGAAAAC---GAACCGGATGTGTC 132
                      **   * ** *  * * *  ** * ** * * *  *    * *    *    *     * 

consensus_3730#0      AATGTAACTTCAAAGTGCA-CTTGTTGATGATGTATAGTATGCAAGTACAGATTTGTTCT 359
consensus_3730#1      AAAGCGAATT-GTTTTGCAGCTTCGCGTTGGTGTTTTATTTATTAATTCC--TTTATCCT 189
                      ** *  * **     **** ***   * ** *** *  * *   * * *   *** * **

consensus_3730#0      ATAAGAACGCACACACACACATACACTCGCAGAAGTATGTCTAACGGGAAGGAGTTTTAA 419
consensus_3730#1      TC---GATTCAGAAAC---CCTTTAAGCGCATAGGT-TGT---------AGGGTTTATAC 233
                            *  ** * **   * *  *  **** * ** ***         ***  ** ** 

consensus_3730#0      TAGCACCGAACACACACACACGCACACACAAACACATACACTTATTTTTTAATTTGTAAT 479
consensus_3730#1      TAATCTTGCATAATCGTGTAC---TGCACAAGTGCGGTCACAAGTCCTATAGAATGTAGT 290
                      **     * * *  *    **     *****   *   ***   *  * **   **** *

consensus_3730#0      GTTTAAGCGAAGGAGAAGCTAGATGTTTGTTTTAATCGAGAAAAAAACTCAATCCCCTCC 539
consensus_3730#1      TTGCANAGCAAGCAAACAGCAAAAACAGGC---AAGCGATCTCCAAAACCTCTTCCTTTC 347
                       *  *    *** * *    * *     *    ** ***     ***  *  * ** * *

consensus_3730#0      AGAGAAAAGCAATGAAATTGAAAAAAAAAATCAAAATTTTTATACGAGTTCCACACACAC 599
consensus_3730#1      --------GTACTTGTATGTGTGAGTAGTGTGCGTGTGTTTATAGTAGT---------GT 390
                              * * *   **     *  *   *     * ******  ***           

consensus_3730#0      AACGGCACACACGTGTTCGTGGTGGAACAAAGCGGCAAATGCAAACGGA-AATGTTTTTT 658
consensus_3730#1      AATAATGTGTGTGTGTGTATAATTTA-CTAAGGACCACATGTATTCCCTCAATATCCGGA 449
                      **          ****   *  *  * * ***   ** *** *  *    *** *     

consensus_3730#0      TTTTTTTAA-ACTATATTTAGCCATGTAAGTCAAACTGAAATCAAACTATGTAACGTTAT 717
consensus_3730#1      CCCCGACGATGCTTTGCTTTGCTCTGTA---CTGATGTANATNTATAAGTATNA-GTTAG 505
                              *  ** *  ** **  ****   *  *   * **  *    * * * **** 

consensus_3730#0      GAAATTATTAAGCCCATTTACGAGCGCAGATGTTTGTGTTTAGAGACTGCTAG--GAGAT 775
consensus_3730#1      TACACGTATAGTCGTATACCTTCGTACGGGTACTGATNTATACAGAATGGTAGCTAGAAC 565
                       * *    **  *  **      *  * * *  *  * * ** *** ** ***     * 

consensus_3730#0      GATCTAGGATCTAGGCGAGCAGGGAAGGCTCTCTCGATCGAGCAGTAAAGGAGAGGCAAA 835
consensus_3730#1      GATTNTACATATG----------------------------------------------- 578
                      ***     ** *                                                

consensus_3730#0      CGCTAAACACGATGATACATATT 858
consensus_3730#1      -----------------------