cluster # 3733

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Anopheles gambiae
cluster # 3733 cluster # 3733 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3733#0 length = 742 sequences # 2

consensus_3733#1 length = 443 sequences # 1

consensusID : consensus_3733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 742
fasta sequence

                              [CCGCATGAAGGTGACAACGATTCCCCATTTCAAGGAGGTAGTGATCATGGCCACGGTTTGCGACAATTGTGGTTTGCGCACGAACGAGGTGAAACCGGGCGGGGGCATTGAAGAGCAGGGCGTGAAAATCGAAGTAAGCGTGCGTGGTAGGATCGATTTTGCGCGTGACGTACTGAAATCGGAATCCTGCAGCTTGCATATTCGCGAGCTGGAGTGCGAGGTCGGTGCCGGTGCGCTGGGTGGAAGGTTTACCACGATCGAGGGCCTATTGACAGCGATGCGTGAGCAGCTGGTGGAAAGTACCGGCATGTTTATGGATTCGAATGACGCAGAAACGAAAGAGCGAATGGATAAGTTCTTTGGCGAACTGGACGCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATCCTACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGCGGATCATTCGTTACCATCGATCATACGATCAAAACGAGGAGTTGGGTTTGAACGACATGAAAACGGAAAACTACGCTGAAGAAGAGAAGACAGAAGAAACGGATAAGAAGGAGAACTGCTGAACGAGGTCTTACAGGATCGTAATACTTAACGTGTGGTAATAATTGTAAAGTGGGTGGTTTTATTGAAGAATAATAAAACACAAATAATGCGCTGCTTATTTCTCCGGCTGTCCAACGCCCTGCTGGTTCTGCGACTCAGCG]

[+] EMBL BM582107             [CCGCATGAAGGTGACAACGATTCCCCATTTCAAGGAGGTAGTGATCATGGCCACGGTTTGCGACAATTGTGGTTTGCGCACGAACGAGGTGAAACCGGGCGGGGGCATTGAAGAGCAGGGCGTGAAAATCGAAGTAAGCGTGCGTGGTAGGATCGATTTTGCGCGTGACGTACTGAAATCGGAATCCTGCAGCTTGCATATTCGCGAGCTGGAGTGCGAGGTCGGTGCCGGTGCGCTGGGTGGAAGGTTTACCACGATCGAGGGCCTATTGACAGCGATGCGTGAGCAGCTGGTGGAAAGTACCGGCATGTTTATGGATTCGAATGACGCAGAAACGAAAGAGCGAATGGATAAGTTCTTTGGCGAACTGGACGCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATCCTACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGCGGATCATTCGTTACCATCGAT                                                                                                                                                                                                                                                  ]
[+] EMBL BX623992             [                  GATTCCCCATTTCAAGGAGGTAGTGATCATGGCCACGGTTTGCGACAATTGTGGTTTGCGCACGAACGAGGTGAAACCGGGCGGGGGCATTGAAGAGCAGGGCGTGAAAATCGAAGTAAGCGTGCGTGGTAGGATCGATTTTGCGCGTGACGTACTGAAATCGGAATCCTGCAGCTTGCATATTCGCGAGCTGGAGTGCGAGGTCGGTGCCGGTGCGCTGGGTGGAAGGTTTACCACGATCGAGGGCCTATTGACAGCGATGCGTGAGCAGCTGGTGGAAAGTACCGGCATGTTTATGGATTCGAATGACGCAGAAACGAAAGAGCGAATGGATAAGTTCTTTGGCGAACTGGACGCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATCCTACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGCGGATCATTCGGTACCATCGATCATACGATCAAAACGAGGAGTTGGGTTTGAACGACATGAAAACGGAAAACTACGCTGAAGAAGAGAAGACAGAAGAAACGGATAAGAAGGAGAACTGCTGAACGAGGTCTTACAGGATCGTAATACTTAACGTGTGGTAATAATTGTAAAGTGGGTGGTTTTATTGAAGAATAATAAAACACAAATAATGCGCTGCTTATTTCTCCGGCTGTCCAACGCCCTGCTGGTTCTGCGACTCAGCG]




>consensus_3733#0
CCGCATGAAGGTGACAACGATTCCCCATTTCAAGGAGGTAGTGATCATGGCCACGGTTTG
CGACAATTGTGGTTTGCGCACGAACGAGGTGAAACCGGGCGGGGGCATTGAAGAGCAGGG
CGTGAAAATCGAAGTAAGCGTGCGTGGTAGGATCGATTTTGCGCGTGACGTACTGAAATC
GGAATCCTGCAGCTTGCATATTCGCGAGCTGGAGTGCGAGGTCGGTGCCGGTGCGCTGGG
TGGAAGGTTTACCACGATCGAGGGCCTATTGACAGCGATGCGTGAGCAGCTGGTGGAAAG
TACCGGCATGTTTATGGATTCGAATGACGCAGAAACGAAAGAGCGAATGGATAAGTTCTT
TGGCGAACTGGACGCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATCC
TACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGCG
GATCATTCGTTACCATCGATCATACGATCAAAACGAGGAGTTGGGTTTGAACGACATGAA
AACGGAAAACTACGCTGAAGAAGAGAAGACAGAAGAAACGGATAAGAAGGAGAACTGCTG
AACGAGGTCTTACAGGATCGTAATACTTAACGTGTGGTAATAATTGTAAAGTGGGTGGTT
TTATTGAAGAATAATAAAACACAAATAATGCGCTGCTTATTTCTCCGGCTGTCCAACGCC
CTGCTGGTTCTGCGACTCAGCG

consensusID : consensus_3733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [ACGCAGAATACGCAAGAGCGAATGGATAAGTTCTTTGGCGAACTGGACCCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATCCTACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGCGGATCACTTCGGTACCATCGATCATACGATCACAAACGAGGAGTTGGGTTTGAACGACATGAAAACGGAAAACTACCGCCTGAAGAAGAGAAGACCAGAAGAAACGGATAAGAAGGAGAACTGCTGAACGAGGTCTTACAGGATCGTAATACTTAAACGTGTGGTAATAATTGTAAAGTGGGTGGTTTTATTGAAGGAATAATATAAACACCAAATAATGGCGCTGCTTAAAAAAGAAAAAAAAAGGGAAAAAAAAATAAAAAAAAAAATACAACAAAAAGACGACTGT]

[-] EMBL BX466874             [ACGCAGAATACGCAAGAGCGAATGGATAAGTTCTTTGGCGAACTGGACCCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATCCTACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGCGGATCACTTCGGTACCATCGATCATACGATCACAAACGAGGAGTTGGGTTTGAACGACATGAAAACGGAAAACTACCGCCTGAAGAAGAGAAGACCAGAAGAAACGGATAAGAAGGAGAACTGCTGAACGAGGTCTTACAGGATCGTAATACTTAAACGTGTGGTAATAATTGTAAAGTGGGTGGTTTTATTGAAGGAATAATATAAACACCAAATAATGGCGCTGCTTAAAAAAGAAAAAAAAAGGGAAAAAAAAATAAAAAAAAAAATACAACAAAAAGACGACTGT]




>consensus_3733#1
ACGCAGAATACGCAAGAGCGAATGGATAAGTTCTTTGGCGAACTGGACCCGGCTATCGCT
GGCGACAAACCGCTGACGATAGTGATGGATGATCCTACTGGCAACAGCTACGTGCAGTCA
CTAAACGATGATGGTACACCCGATACGGCATTGCGGATCACTTCGGTACCATCGATCATA
CGATCACAAACGAGGAGTTGGGTTTGAACGACATGAAAACGGAAAACTACCGCCTGAAGA
AGAGAAGACCAGAAGAAACGGATAAGAAGGAGAACTGCTGAACGAGGTCTTACAGGATCG
TAATACTTAAACGTGTGGTAATAATTGTAAAGTGGGTGGTTTTATTGAAGGAATAATATA
AACACCAAATAATGGCGCTGCTTAAAAAAGAAAAAAAAAGGGAAAAAAAAATAAAAAAAA
AAATACAACAAAAAGACGACTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3733#0      CCGCATGAAGGTGACAACGATTCCCCATTTCAAGGAGGTAGTGATCATGGCCACGGTTTG 60
consensus_3733#1      ------------------------------------------------------------
                                                                                  

consensus_3733#0      CGACAATTGTGGTTTGCGCACGAACGAGGTGAAACCGGGCGGGGGCATTGAAGAGCAGGG 120
consensus_3733#1      ------------------------------------------------------------
                                                                                  

consensus_3733#0      CGTGAAAATCGAAGTAAGCGTGCGTGGTAGGATCGATTTTGCGCGTGACGTACTGAAATC 180
consensus_3733#1      ------------------------------------------------------------
                                                                                  

consensus_3733#0      GGAATCCTGCAGCTTGCATATTCGCGAGCTGGAGTGCGAGGTCGGTGCCGGTGCGCTGGG 240
consensus_3733#1      ------------------------------------------------------------
                                                                                  

consensus_3733#0      TGGAAGGTTTACCACGATCGAGGGCCTATTGACAGCGATGCGTGAGCAGCTGGTGGAAAG 300
consensus_3733#1      ------------------------------------------------------------
                                                                                  

consensus_3733#0      TACCGGCATGTTTATGGATTCGAATGACGCAGAA-ACGAAAGAGCGAATGGATAAGTTCT 359
consensus_3733#1      --------------------------ACGCAGAATACGCAAGAGCGAATGGATAAGTTCT 34
                                                ******** *** *********************

consensus_3733#0      TTGGCGAACTGGACGCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATC 419
consensus_3733#1      TTGGCGAACTGGACCCGGCTATCGCTGGCGACAAACCGCTGACGATAGTGATGGATGATC 94
                      ************** *********************************************

consensus_3733#0      CTACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGC 479
consensus_3733#1      CTACTGGCAACAGCTACGTGCAGTCACTAAACGATGATGGTACACCCGATACGGCATTGC 154
                      ************************************************************

consensus_3733#0      GGATCA-TTCGTTACCATCGATCATACGATCA-AAACGAGGAGTTGGGTTTGAACGACAT 537
consensus_3733#1      GGATCACTTCGGTACCATCGATCATACGATCACAAACGAGGAGTTGGGTTTGAACGACAT 214
                      ****** **** ******************** ***************************

consensus_3733#0      GAAAACGGAAAACTACG--CTGAAGAAGAGAAGAC-AGAAGAAACGGATAAGAAGGAGAA 594
consensus_3733#1      GAAAACGGAAAACTACCGCCTGAAGAAGAGAAGACCAGAAGAAACGGATAAGAAGGAGAA 274
                      ****************   **************** ************************

consensus_3733#0      CTGCTGAACGAGGTCTTACAGGATCGTAATACTTAA-CGTGTGGTAATAATTGTAAAGTG 653
consensus_3733#1      CTGCTGAACGAGGTCTTACAGGATCGTAATACTTAAACGTGTGGTAATAATTGTAAAGTG 334
                      ************************************ ***********************

consensus_3733#0      GGTGGTTTTATTGAAG-AATAATA-AAACAC-AAATAATG-CGCTGCTTATTTCTCC--- 706
consensus_3733#1      GGTGGTTTTATTGAAGGAATAATATAAACACCAAATAATGGCGCTGCTTAAAAAAGAAAA 394
                      **************** ******* ****** ******** *********          

consensus_3733#0      -----GGCTGTCCAACGCCCTGCTGGTTCTGCGACTCAGCG-------- 742
consensus_3733#1      AAAAAGGGAAAAAAAAATAAAAAAAAAAATACAACAAAAAGACGACTGT 443
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