cluster # 3736

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Anopheles gambiae
cluster # 3736 cluster # 3736 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3736#0 length = 710 sequences # 1

consensus_3736#1 length = 658 sequences # 2

consensusID : consensus_3736#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [CCCCGAGGTTTAACGCAAACTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTATTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAANTTATAGAAGGGGCCACTAATTGTNATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTACATANGACCACACATACCCGCCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGANAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGCGTGTACGANTATTGTACACTGACTTGTNCACTGCANGCACAAAATAACGAACAGACGATTGAGCTGAACTGACAGGACTCTTACGGCTTGAGTNTAGCGCCATCCATCTTACTGTACCCGGCTTCACTNTCANCCATGCATCACTTCTAGCTTAGCTTAAANNCCTGCCAAACTANCCTGNNCACGGGAAATGATGGTATCGTCTCGAACTATTAAATTGCA]

[+] EMBL AL693072             [CCCCGAGGTTTAACGCAAACTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTATTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAANTTATAGAAGGGGCCACTAATTGTNATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTACATANGACCACACATACCCGCCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGANAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGCGTGTACGANTATTGTACACTGACTTGTNCACTGCANGCACAAAATAACGAACAGACGATTGAGCTGAACTGACAGGACTCTTACGGCTTGAGTNTAGCGCCATCCATCTTACTGTACCCGGCTTCACTNTCANCCATGCATCACTTCTAGCTTAGCTTAAANNCCTGCCAAACTANCCTGNNCACGGGAAATGATGGTATCGTCTCGAACTATTAAATTGCA]




>consensus_3736#0
CCCCGAGGTTTAACGCAAACTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGA
TATATCCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTATTTGCCTGAAGTATAAA
TATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGA
TTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATG
TCGGCAATTCTGGTTTAANTTATAGAAGGGGCCACTAATTGTNATAATGAGGCAGAATCA
GATAACCAATAGCACTGTTTAAACAAGATTACATANGACCACACATACCCGCCACGAACA
GACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGANAAATGGATTCGCAGCGTGCAC
GTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGT
TACGGAGCGTGTACGANTATTGTACACTGACTTGTNCACTGCANGCACAAAATAACGAAC
AGACGATTGAGCTGAACTGACAGGACTCTTACGGCTTGAGTNTAGCGCCATCCATCTTAC
TGTACCCGGCTTCACTNTCANCCATGCATCACTTCTAGCTTAGCTTAAANNCCTGCCAAA
CTANCCTGNNCACGGGAAATGATGGTATCGTCTCGAACTATTAAATTGCA

consensusID : consensus_3736#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 658
fasta sequence

                              [CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGGGACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAACCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTTTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAAATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTAATAAGACCACACATACCCGCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGAAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGGTGTACGATATTGTAACTGAATTGTAACTGAAGAAAAATAACGAAAGACGATTGAGCTGAATCGCCACAACAAC]

[+] EMBL BM657691             [CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGGGACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAACCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTTTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAAATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTAATAAGACCACACATACCCGCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGAAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGGTGTACGATATTGTAACTGAATTGTAACTGAAGAAAAATAACGAAAGACGATTGAGCTGAATCGCCACAACAAC]
[+] EMBL BM657707             [CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGGGACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAACCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTTTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAAATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTAATAAGACCACACATACCCGCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGAAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGGTGTACGATATTGTAACTGAATTGTAACTGAAGAAAAATAACGAAAGACGATTGAGCTG               ]




>consensus_3736#1
CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGG
GACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAA
CCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCGCAGGCACGATC
AGCTCACGAATGATTGATTTTGTTTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACT
TTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTT
TGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAAAT
TATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGTTT
AAACAAGATTAATAAGACCACACATACCCGCACGAACAGACAATTATTGTAGACTCAATC
TGAGACCAGCGAAGGAAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATA
CACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGGTGTACGATATTGTAA
CTGAATTGTAACTGAAGAAAAATAACGAAAGACGATTGAGCTGAATCGCCACAACAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3736#0      ------------------------------------------------------------
consensus_3736#1      CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGG 60
                                                                                  

consensus_3736#0      ----------------------------------------CCCCGAGGTTTAACGCAAA- 19
consensus_3736#1      GACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAA 120
                                                                 * *     ***** ** 

consensus_3736#0      -CTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCCGCAGGCACGAT 78
consensus_3736#1      CCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATC-GCAGGCACGAT 179
                       *********************************************** ***********

consensus_3736#0      CAGCTCACGAATGATTGATTTTGTATTTGCCTGAAGTATAAATATTTGGTCAAGAATGTA 138
consensus_3736#1      CAGCTCACGAATGATTGATTTTGT-TTTGCCTGAAGTATAAATATTTGGTCAAGAATGTA 238
                      ************************ ***********************************

consensus_3736#0      CTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGG 198
consensus_3736#1      CTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGG 298
                      ************************************************************

consensus_3736#0      TTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAA 258
consensus_3736#1      TTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAA 358
                      ************************************************************

consensus_3736#0      NTTATAGAAGGGGCCACTAATTGTNATAATGAGGCAGAATCAGATAACCAATAGCACTGT 318
consensus_3736#1      ATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGT 418
                       *********************** ***********************************

consensus_3736#0      TTAAACAAGATTACATANGACCACACATACCCGCCACGAACAGACAATTATTGTAGACTC 378
consensus_3736#1      TTAAACAAGATTA-ATAAGACCACACATACCCGC-ACGAACAGACAATTATTGTAGACTC 476
                      ************* *** **************** *************************

consensus_3736#0      AATCTGAGACCAGCGAAGGANAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAA 438
consensus_3736#1      AATCTGAGACCAGCGAAGGAAAA-TGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAA 535
                      ******************** ** ************************************

consensus_3736#0      TAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGCGTGTACGANT 498
consensus_3736#1      TAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAG-GTGTACGAT- 593
                      ************************************************* ********  

consensus_3736#0      ATTGTACACTGACTTGTNCACTGCANGCACAAAATAACGAACAGACGATTGAGCTGAACT 558
consensus_3736#1      ATTGTA-ACTGAATTGTA-ACTGAAGA---AAAATAACGAA-AGACGATTGAGCTGAATC 647
                      ****** ***** ****  **** *     *********** ****************  

consensus_3736#0      GACAGGACTCTTACGGCTTGAGTNTAGCGCCATCCATCTTACTGTACCCGGCTTCACTNT 618
consensus_3736#1      GCCACAACAAC------------------------------------------------- 658
                      * **  **                                                    

consensus_3736#0      CANCCATGCATCACTTCTAGCTTAGCTTAAANNCCTGCCAAACTANCCTGNNCACGGGAA 678
consensus_3736#1      ------------------------------------------------------------
                                                                                  

consensus_3736#0      ATGATGGTATCGTCTCGAACTATTAAATTGCA 710
consensus_3736#1      --------------------------------