cluster # 3745

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3745 cluster # 3745 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3745#0 length = 648 sequences # 1

consensus_3745#1 length = 489 sequences # 2

consensusID : consensus_3745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGCTGGCGCAGGTAACCGAGGGCAGCAACTACTACGTGGCGCGGCACAGCCGCGAGCTGCCGATCCGCTGGTACGCGCCGGAAACGCTCGAAACGCAAAAGTACTCCTCCCAGTCGGACGTGTGGTCGTTCGGCGTGACGCTGTACGAGATGTTCACGTACGGTGCGACACCGTACTCGCACGTGGACGTCAAGAGTGCGGCCCAGTTGTATCAACTGCTGCAACGCGAGACAAAGATATTACAGCTTCCGGAGGATTTTTCGTACGTGTACGATAAGCTGATGGCACCGTGCTTTAAGCGGGATCCGCACGAGCGCATGACATTCAGCGAGCTGCTGGAGGAGCTGAACGACATGATCAATCAGTACGGTGAACCGATCTATTAGGTTTCGCAGACAGGCGGATGAGATGAATAGAATCTGTGAATAAGCGCAAGCGTGTTCTTGTGTGCGCAAGGCAAGCCATTATATTTAATGTTTGAAGAAAAAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAG]

[+] EMBL BM607293             [CCGCTGGCGCAGGTAACCGAGGGCAGCAACTACTACGTGGCGCGGCACAGCCGCGAGCTGCCGATCCGCTGGTACGCGCCGGAAACGCTCGAAACGCAAAAGTACTCCTCCCAGTCGGACGTGTGGTCGTTCGGCGTGACGCTGTACGAGATGTTCACGTACGGTGCGACACCGTACTCGCACGTGGACGTCAAGAGTGCGGCCCAGTTGTATCAACTGCTGCAACGCGAGACAAAGATATTACAGCTTCCGGAGGATTTTTCGTACGTGTACGATAAGCTGATGGCACCGTGCTTTAAGCGGGATCCGCACGAGCGCATGACATTCAGCGAGCTGCTGGAGGAGCTGAACGACATGATCAATCAGTACGGTGAACCGATCTATTAGGTTTCGCAGACAGGCGGATGAGATGAATAGAATCTGTGAATAAGCGCAAGCGTGTTCTTGTGTGCGCAAGGCAAGCCATTATATTTAATGTTTGAAGAAAAAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAG]




>consensus_3745#0
CCGCTGGCGCAGGTAACCGAGGGCAGCAACTACTACGTGGCGCGGCACAGCCGCGAGCTG
CCGATCCGCTGGTACGCGCCGGAAACGCTCGAAACGCAAAAGTACTCCTCCCAGTCGGAC
GTGTGGTCGTTCGGCGTGACGCTGTACGAGATGTTCACGTACGGTGCGACACCGTACTCG
CACGTGGACGTCAAGAGTGCGGCCCAGTTGTATCAACTGCTGCAACGCGAGACAAAGATA
TTACAGCTTCCGGAGGATTTTTCGTACGTGTACGATAAGCTGATGGCACCGTGCTTTAAG
CGGGATCCGCACGAGCGCATGACATTCAGCGAGCTGCTGGAGGAGCTGAACGACATGATC
AATCAGTACGGTGAACCGATCTATTAGGTTTCGCAGACAGGCGGATGAGATGAATAGAAT
CTGTGAATAAGCGCAAGCGTGTTCTTGTGTGCGCAAGGCAAGCCATTATATTTAATGTTT
GAAGAAAAAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGC
AAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAG
CTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAG

consensusID : consensus_3745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 489
fasta sequence

                              [AAAAACAAAGGAAATCTTAATCACAAAAAGAAAACGGGTAAATCCTTATTTTACATGTGCGTCGTGCGTACGGCTGGTGGGAGAGTATTATCCTTGTAAGATGTGCTCGTGTATAAATCAATTAGAACACGAGAAGAACACGGTGTTGTTATGTGTGATGATAATGATGATGATGAGGATGGATAAGACAACGCAAAATTCGACATAGATTAAAAATCTCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACAGACAAAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA]

[+] EMBL BX618196             [AAAAACAAAGGAAATCTTAATCACAAAAAGAAAACGGGTAAATCCTTATTTTACATGTGCGTCGTGCGTACGGCTGGTGGGAGAGTATTATCCTTGTAAGATGTGCTCGTGTATAAATCAATTAGAACACGAGAAGAACACGGTGTTGTTATGTGTGATGATAATGATGATGATGAGGATGGATAAGACAACGCAAAATTCGACATAGATTAAAAATCTCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACAGACAAAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA]
[-] EMBL BM631205             [                        AAAAAGAAAACGGGGAAATCCTTATTTTACATGTGCGTCGTGCGTCCGGCTGGTGGGAGAGTATTATCCTTGTAAGATGTGCGCGTGTATAAATCAATTAGATCACGAGAAGAACACGGTGTTGTTATGTGTGATGATAATGATGATGATGAGGATGGATAAGACAACGCAAAATTCGACATAGATTAAAAATCTCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACAGACAAAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAGCTAc                                                                                                                              ]




>consensus_3745#1
AAAAACAAAGGAAATCTTAATCACAAAAAGAAAACGGGTAAATCCTTATTTTACATGTGC
GTCGTGCGTACGGCTGGTGGGAGAGTATTATCCTTGTAAGATGTGCTCGTGTATAAATCA
ATTAGAACACGAGAAGAACACGGTGTTGTTATGTGTGATGATAATGATGATGATGAGGAT
GGATAAGACAACGCAAAATTCGACATAGATTAAAAATCTCACAATTAAGTTGCAGAAGAA
TGCGCTCATGTGCACAGACAAAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAAC
TAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGA
GAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3745#0      CCGCTGGCGCAGGTAACCGAGGGCAGCAACTACTACGTGGCGCGGCACAGCCGCGAGCTG 60
consensus_3745#1      ------------------------------------------------------------
                                                                                  

consensus_3745#0      CCGATCCGCTGGTACGCGCCGGAAACGCTCGAAACGCAAAAGTACTCCTCCCAGTCGGAC 120
consensus_3745#1      ------------------------------------------------------------
                                                                                  

consensus_3745#0      GTGTGGTCGTTCGGCGTGACGCTGTACGAGATGTTCACGTACGGTGCGACACCGTACTCG 180
consensus_3745#1      ------------------------------------AAAAACAAAG-GAAATCTTAATCA 23
                                                          *   **   * ** * * ** ** 

consensus_3745#0      CACGTGGACGTCAAGAGTGCGGCCCAGTTGTATCAACTGCTGCAACGCGAGACAAAGATA 240
consensus_3745#1      CAAAAAGAAAAC--GGGTAAATCC---TTATTTTACATG-TGCGTCGTGCG--------- 68
                      **    **   *  * **    **   ** * * *  ** ***  ** * *         

consensus_3745#0      TTACAGCTTCCGGAGGATTTTTCGTACGTGTACGATAAGCTGATGGCACCGTGCTTTAAG 300
consensus_3745#1      -TACGGCTGGTGGGAGAGTATT-ATCCTTGTAAGATGTGCTCGTG----TATAAATCAAT 122
                       *** ***   **  ** * **  * * **** ***  ***  **      *   * ** 

consensus_3745#0      CGGGATCCGCACGAGCGCATGACATTCAGCGAGCTGCTGGAGGAGCTGAACGACATGATC 360
consensus_3745#1      TAGAACACG-AGAAGAACACGGTGTT------------------GTTATGTGTGATGAT- 162
                        * *  ** *  **  ** *   **                  * *    *  ***** 

consensus_3745#0      AATCAGTACGGTGAACCGATCTATTAGGTTTCGCAGACAGGCGGATGAGATGAATAGAAT 420
consensus_3745#1      AATGATGATGATGAG--GATGGATAAGACAACGCAAA-ATTCGACATAGATTAA-AAATC 218
                      *** *  * * ***   ***  ** **    **** * *  **    **** ** * *  

consensus_3745#0      CTGTGAATAAG---CGCAAGCGTGTTCTTGTGTGCGCAAGGCAAGCCATTATATTTAATG 477
consensus_3745#1      TCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACA-GACAAAAAGCAAGAGAGAGAG 277
                           * ****   *  ***  **  **  ***** ** * ***      * *   *  *

consensus_3745#0      TTTGAAGAAAAAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAAC 537
consensus_3745#1      ---AGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAAC 334
                           *** * *************************************************

consensus_3745#0      CGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCAT 597
consensus_3745#1      CGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCAT 394
                      ************************************************************

consensus_3745#0      AAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAG--------- 648
consensus_3745#1      AAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA 454
                      ***************************************************         

consensus_3745#0      -----------------------------------
consensus_3745#1      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA 489