cluster # 376

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Anopheles gambiae
cluster # 376 cluster # 376 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_376#0 length = 635 sequences # 1

consensus_376#1 length = 541 sequences # 1

consensusID : consensus_376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCCCACGCGTCCGTAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCCTATCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAAATGTAACGGCGATAAAAAACGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGTTGATAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAATTGTGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATTTATGCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTTCAGAGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCGCACAATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAGCAACGTTACAGCTTCAGCTAATATTTCAACAGCTGAAAAAAAATCTTCTGCATCCTCAGATTCATACACTTCAGTGCAACACGTGCATCGTATGCCAGAAGATACAAAAGATAAACAAATCTCCCAGCGAATGTCCACACAAGTAGGAAGCATAA]

[+] EMBL BM625070             [CCGCCCACGCGTCCGTAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCCTATCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAAATGTAACGGCGATAAAAAACGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGTTGATAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAATTGTGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATTTATGCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTTCAGAGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCGCACAATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAGCAACGTTACAGCTTCAGCTAATATTTCAACAGCTGAAAAAAAATCTTCTGCATCCTCAGATTCATACACTTCAGTGCAACACGTGCATCGTATGCCAGAAGATACAAAAGATAAACAAATCTCCCAGCGAATGTCCACACAAGTAGGAAGCATAA]




>consensus_376#0
CCGCCCACGCGTCCGTAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCC
TATCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAAATGTAACGGCGATAAA
AAACGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGT
TGATAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAA
TTGTGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATT
TATGCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTT
CAGAGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCG
CACAATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAG
CAACGTTACAGCTTCAGCTAATATTTCAACAGCTGAAAAAAAATCTTCTGCATCCTCAGA
TTCATACACTTCAGTGCAACACGTGCATCGTATGCCAGAAGATACAAAAGATAAACAAAT
CTCCCAGCGAATGTCCACACAAGTAGGAAGCATAA

consensusID : consensus_376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [CCGGAAACAAAACAATTTCCTTTAGCAGTGGGGAATCAGATTTATGTATGAATGCTAGTTGCGCGTTGAATATTAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCCTATCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAATGTAACGGCGATAAAAAACGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGTTGATAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAATTGTGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATTTATGCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTTCAGAGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCGCACAATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAGCAAC]

[+] EMBL BM655157             [CCGGAAACAAAACAATTTCCTTTAGCAGTGGGGAATCAGATTTATGTATGAATGCTAGTTGCGCGTTGAATATTAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCCTATCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAATGTAACGGCGATAAAAAACGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGTTGATAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAATTGTGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATTTATGCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTTCAGAGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCGCACAATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAGCAAC]




>consensus_376#1
CCGGAAACAAAACAATTTCCTTTAGCAGTGGGGAATCAGATTTATGTATGAATGCTAGTT
GCGCGTTGAATATTAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCCTA
TCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAATGTAACGGCGATAAAAAA
CGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGTTGA
TAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAATTG
TGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATTTAT
GCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTTCAG
AGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCGCAC
AATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAGCAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_376#0      ------------------------------------------------------CCGCCC 6
consensus_376#1      CCGGAAACAAAACAATTTCCTTTAGCAGTGGGGAATCAGATTTATGTATGAATGCTAGTT 60
                                                                           *     

consensus_376#0      ACGCGTCCG----TAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCCTA 62
consensus_376#1      GCGCGTTGAATATTAATGCCCATCACTGTAATTTCTCACATCGGAAAACTGCTATGCCTA 120
                      *****       ***********************************************

consensus_376#0      TCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAAATGTAACGGCGATAAAAA 122
consensus_376#1      TCGTTAATACTAATTGTGGAGAGGCTAGTAGAACAGGAGTAA-TGTAACGGCGATAAAAA 179
                     ****************************************** *****************

consensus_376#0      ACGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGTTG 182
consensus_376#1      ACGAGAATTGTTCTTCCATGTCCATGTTTCATAAGTCAAACCGTTTACCAGATGGTGTTG 239
                     ************************************************************

consensus_376#0      ATAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAATT 242
consensus_376#1      ATAAACTTTTCGACACTACTTATCAACGTAATTGTCAGTCCACAGTCGTAGCTGATAATT 299
                     ************************************************************

consensus_376#0      GTGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATTTA 302
consensus_376#1      GTGGTGACGAAAATCCACATTTAACCTCTACTACAGAATCGCCAGTTTCACAATCATTTA 359
                     ************************************************************

consensus_376#0      TGCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTTCA 362
consensus_376#1      TGCATTCCGTCCCAGTACCAGCCATGTTCAATGACGATATGATAAACGACACAAAGTTCA 419
                     ************************************************************

consensus_376#0      GAGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCGCA 422
consensus_376#1      GAGGCTCCATAGAATCTGATGTGATAAAAAATCGACTAATTGGTAAAAAATATCATCGCA 479
                     ************************************************************

consensus_376#0      CAATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAGCA 482
consensus_376#1      CAATTCCACGTCATTTTTCGGTAGTTGATCCGATTATAAATCCCATCAAGGCTAATAGCA 539
                     ************************************************************

consensus_376#0      ACGTTACAGCTTCAGCTAATATTTCAACAGCTGAAAAAAAATCTTCTGCATCCTCAGATT 542
consensus_376#1      AC---------------------------------------------------------- 541
                     **                                                          

consensus_376#0      CATACACTTCAGTGCAACACGTGCATCGTATGCCAGAAGATACAAAAGATAAACAAATCT 602
consensus_376#1      ------------------------------------------------------------
                                                                                 

consensus_376#0      CCCAGCGAATGTCCACACAAGTAGGAAGCATAA 635
consensus_376#1      ---------------------------------