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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1111 fasta sequence
[GCGAGCAAGCATTTGGTGTACCGGACGGGAGCGAACCAACACCGGACGGGCGGGATGGGCAAGCAGCTGAGCCGGTTGCTGTACCAGGAGCGCGAACCAATCGATCCGATGGTGTTGCTTCGCGGCCAGGAGCTACGGCGGCACATCGAGCGGGCTCGGTTTCGCTGCCGGCTGCTGGAGCAGGAACGCGACCGGATGTGCGGTGGAATGCAGCAGCTGCGCAATCGGCTGAATGCGGCCTGTGATAGCAACATTGAGCGAGAGTCGGCACTGATGGAGCGCTATCGGACGTACGGGCGGGAGAAGGAGCAGCTGTACCAACAGAAGGGCTTACGCTAGCCAGAAGGACAGCGTGCGTGAGGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAAGGGGCTGAACGAAATTTATTACATTAAATCGACGAGTCAGGGCATCTACACCATTAACTATGTACCATTGCCGAATGCGGAATCGTACACGGACGCAACGCCAGCACTGGCCCTCAGCGTTGCTCTTGGCTTCGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACGGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAACGATGGATCGAGACTTTCCCCTGCACTGTCGCTCGGGACCAGCGCCGAACGCGCTGCTGTATGGGGTGTACCTGTTGAATCAGAACATTTCCCAGCTCAAGCATCAGCTCTCGCTGAGCCGGGGCGACCCGCGGGCCACGCTCGTTAATCTGCAGGACATTCTCACCATCCCCGGCATCGGCGGGCCGCTGCAGAAGCGTGATCTTGAGGAAGCGTTCCAAATGCTACCCTCGTCCGTGTTCGGGGCGTCATCGCCCGGGTTTATTTCGCTGTCGACTGCCGGTGGGAGCAGTAGCGGTAGCAGCAGTAGTGGATCGTTCCTTCGTGACAGCCCCTCTAGTAATAGAATTTCCCGCTCGGTTGATAACTACACGGACCGAAGGCAGCAGATGCAAAGGCACTACCAGCTTAATAGACATCCGTTGCAGCAGGCAAAAAGGCTGTCGAGCAGCAGCAGCAGTGCC]
[+] EMBL BX609285 [GCGAGCAAGCATTTGGTGTACCGGACGGGAGCGAACCAACACCGGACGGGCGGGATGGGCAAGCAGCTGAGCCGGTTGCTGTACCAGGAGCGCGAACCAATCGATCCGATGGTGTTGCTTCGCGGCCAGGAGCTACGGCGGCACATCGAGCGGGCTCGGTTTCGCTGCCGGCTGCTGGAGCAGGAACGCGACCGGATGTGCGGTGGAATGCAGCAGCTGCGCAATCGGCTGAATGCGGCCTGTGATAGCAACATTGAGCGAGAGTCGGCACTGATGGAGCGCTATCGGACGTACGGGCGGGAGAAGGAGCAGCTGTACCAACAGAAGGGCTTACGCTAGCCAGAAGGACAGCGTGCGTGAGGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAAGGGGCTGAACGAAATTTATTACATTAAATCGACGAGTCAGGGCATCTACACCATTAACTATGTACCATTGCCGAATGCGGAATCGTACACGGACGCAACGCCAGCACTGGCCCTCAGCGTTGCTCTTGGCTTCGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACGGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAACGATGGATCGAGACTTTCCCCTGCACTGTCGCTCGGGACCAGCGCCGAACGCGCTGCTGTATGGGGTGTACCTGTTGAATCAGAACATTTCCCAGCTCAAGCATCAGC ]
[+] EMBL BX612674 [ TACGCTAGCCAGAAGGACAGCGTTCGTGAGGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAAGGGGCTGAACGAAATTTATTACATTAAATCGACGAGTCAGGGCATCTACACCATTAACGATGTACCATTGCCGAATGCGGAATCGTACACGGACGCAACGCCAGCACTGGCCCTCAGCGTTGCTCTTGGCTTCGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACGGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAACGATGGATCGAGACTTTCCCCTGCACTGTCGCTCGGGACCAGCGCCGAACGCGCTGCTGTATGGGGTGTACCTGTTGAATCAGAACATTTCCCAGCTCAAGCATCAGCTCTCGCTGAGCCGGGGCGACCCGCGGGCCACGCTCGTTAATCTGCAGGACATTCTCACCATCCCCGGCATCGGCGGGCCGCTGCAGAAGCGTGATCTTGAGGAAGCGTTCCAAATGCTACCCTCGTCCGTGTTCGGGGCGTCATCGCCCGGGTTTATTTCGCTGTCGACTGCCGGTGGGAGCAGTAGCGGTAGCAGCAGTAGTGGATCGTTCCTTCGTGACAGCCCCTCTAGTAATAGAATTTCCCGCTCGGTTGATAACTACACGGACCGAAGGCAGCAGATGCAAAGGCACTACCAGCTTAATAGACATCCGTTGCAGCAGGCAAAAAGGCTGTCGAGCAGCAGCAGCAGTGCC]
consensusID : consensus_3762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence
[TGCAAGAATCNCCACGAGGTGCCATCAGTTGCTAAATGGGGCTGAACGAAATTTATTACATTAAATCTGACGAGTCAGTGGCATCTACACCATTAACTGATGTACCATTGCCTGAATGCGTGAATCTGTACACGGACTGCAACTGCCAGCACTGGCCCTCAGCTGTTGCTCTTGTGCTTCTGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACTGGTTCCCGTTCGAAGATAGTGGACAAATTTAAGCTAATACAACTGAATTGGATCGAGACTTTCCCCTTGCACTGNCGCTCGGGGACAGATGGCCGAACATGCCGCCTGCTGTATGGGGGTGTAACCTGGTTGGAAATCNACGAACACATTTACCCCAGGTTCAATNCGCAATTCAAATACCTTCNTCCTCCTATTAAANCACGAATATTAAGTAAACCCCCNNCAANATAGTACACCAACAGTCAACACCAATATAAATCANTTTTCAAAACTCANAAANANATTAACTACTAAACAAAAATCACCCCACAACAACATATANAAGNAANAAANACCACCCTTGTCAAAACAAAAACAAATATAACACACAATTNGNAAAANTAGGATAAAAAACANGATGTTAACCACACAAAAAACTGTTGCGATAAAAACACCACACATCAGAAAAAACCNNAGATANNTAAAAANCAACGANGTNAAGGAATAACAAANAGCANAAAANACCANGAAANAAAAANNAAAAAAAATACAGCAAGANAAGATAAAGCAACNAAAAAAAANANANAAAGAAAGAGAAGAAAAANAACAAANAAAAAACAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAGACAGANAAAAAAAAAAAATATACCAAGAAAANAAA]
[+] EMBL AL693474 [TGCAAGAATCNCCACGAGGTGCCATCAGTTGCTAAATGGGGCTGAACGAAATTTATTACATTAAATCTGACGAGTCAGTGGCATCTACACCATTAACTGATGTACCATTGCCTGAATGCGTGAATCTGTACACGGACTGCAACTGCCAGCACTGGCCCTCAGCTGTTGCTCTTGTGCTTCTGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACTGGTTCCCGTTCGAAGATAGTGGACAAATTTAAGCTAATACAACTGAATTGGATCGAGACTTTCCCCTTGCACTGNCGCTCGGGGACAGATGGCCGAACATGCCGCCTGCTGTATGGGGGTGTAACCTGGTTGGAAATCNACGAACACATTTACCCCAGGTTCAATNCGCAATTCAAATACCTTCNTCCTCCTATTAAANCACGAATATTAAGTAAACCCCCNNCAANATAGTACACCAACAGTCAACACCAATATAAATCANTTTTCAAAACTCANAAANANATTAACTACTAAACAAAAATCACCCCACAACAACATATANAAGNAANAAANACCACCCTTGTCAAAACAAAAACAAATATAACACACAATTNGNAAAANTAGGATAAAAAACANGATGTTAACCACACAAAAAACTGTTGCGATAAAAACACCACACATCAGAAAAAACCNNAGATANNTAAAAANCAACGANGTNAAGGAATAACAAANAGCANAAAANACCANGAAANAAAAANNAAAAAAAATACAGCAAGANAAGATAAAGCAACNAAAAAAAANANANAAAGAAAGAGAAGAAAAANAACAAANAAAAAACAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAGACAGANAAAAAAAAAAAATATACCAAGAAAANAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3762#0 GCGAGCAAGCATTTGGTGTACCGGACGGGAGCGAACCAACACCGGACGGGCGGGATGGGC 60
consensus_3762#1 ------------------------------------------------------------
consensus_3762#0 AAGCAGCTGAGCCGGTTGCTGTACCAGGAGCGCGAACCAATCGATCCGATGGTGTTGCTT 120
consensus_3762#1 ------------------------------------------------------------
consensus_3762#0 CGCGGCCAGGAGCTACGGCGGCACATCGAGCGGGCTCGGTTTCGCTGCCGGCTGCTGGAG 180
consensus_3762#1 ------------------------------------------------------------
consensus_3762#0 CAGGAACGCGACCGGATGTGCGGTGGAATGCAGCAGCTGCGCAATCGGCTGAATGCGGCC 240
consensus_3762#1 ------------------------------------------------------------
consensus_3762#0 TGTGATAGCAACATTGAGCGAGAGTCGGCACTGATGGAGCGCTATCGGACGTACGGGCGG 300
consensus_3762#1 ------------------------------------------------------------
consensus_3762#0 GAGAAGGAGCAGCTGTACCAACAGAAGGGCTTACGCTAGCCAGAAGGACAGCGTGCGTGA 360
consensus_3762#1 ------------------------------------------------------------
consensus_3762#0 GGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAA-GGGGCTGAACGAAATTT 419
consensus_3762#1 ------TGCAAGAATCNCCACGAGGTGCCATCAGTTGCTAAATGGGGCTGAACGAAATTT 54
**** ** * * * **************** *****************
consensus_3762#0 ATTACATTAAATC-GACGAGTCAG-GGCATCTACACCATTAACT-ATGTACCATTGCC-G 475
consensus_3762#1 ATTACATTAAATCTGACGAGTCAGTGGCATCTACACCATTAACTGATGTACCATTGCCTG 114
************* ********** ******************* ************* *
consensus_3762#0 AATGCG-GAATC-GTACACGGAC-GCAAC-GCCAGCACTGGCCCTCAGC-GTTGCTCTTG 530
consensus_3762#1 AATGCGTGAATCTGTACACGGACTGCAACTGCCAGCACTGGCCCTCAGCTGTTGCTCTTG 174
****** ***** ********** ***** ******************* **********
consensus_3762#0 -GCTTC-GTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAA 588
consensus_3762#1 TGCTTCTGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAA 234
***** *****************************************************
consensus_3762#0 TCCCATTAAGTATGAC-GGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAA 647
consensus_3762#1 TCCCATTAAGTATGACTGGTTCCCGTTCGAAGATAGTGGACAAATTTAAGCTAATACAAC 294
**************** ************************ ** ******** *** *
consensus_3762#0 CGA--TGGATCGAGACTTTCCCCT-GCACTGTCGCTCGGGACCAGC--GCCGAACGCGC- 701
consensus_3762#1 TGAATTGGATCGAGACTTTCCCCTTGCACTGNCGCTCGGGGACAGATGGCCGAACATGCC 354
** ******************* ****** ******** *** ******* **
consensus_3762#0 ---TGCTGTATGGGG-TGTACCT--GTTG------AATCAGAACATTT--CCCAGCTCAA 747
consensus_3762#1 GCCTGCTGTATGGGGGTGTAACCTGGTTGGAAATCNACGAACACATTTACCCCAGGTTCA 414
************ **** * **** * * ****** ***** * *
consensus_3762#0 GCATCAGCTCTCGCTGAGCCGGGGCGACCCGCGGGCCACGCTCGTTAA--------TCTG 799
consensus_3762#1 ATNCGCAATTCAAATACCTTCNTCCTCCTATTAAANCACGAATATTAAGTAAACCCCCNN 474
* * * * **** **** *
consensus_3762#0 CAGGACATTCTCACCATCCCCGGCATCGGCG--GGCCGCTG--CAGAAGCGTGATCTTGA 855
consensus_3762#1 CAANATAGTACACCAACAGTCAACACCAATATAAATCANTTTTCAAAACTCANAAANANA 534
** * * * * * * ** * * * ** ** * *
consensus_3762#0 GGAAGCGTTC--CAAATGCTACCCT-CGTC--CGTGTTCGGGGCGT---CATCGCCCGGG 907
consensus_3762#1 TTAACTACTAAACAAAAATCACCCCACAACAACATATANAAGNAANAAANACCACCCTTG 594
** * **** **** * * * * * * * * *** *
consensus_3762#0 TTTATTTCGCTGTCGACTGCCGGTGGGAGCAGTAGCGGTAGCAGCAGTAGTGGATCGTT- 966
consensus_3762#1 TCAAAACAAAAACAAATATAACACACAATTNGNAAAANTAGGATAAAAAACANGATGTTA 654
* * * * * * *** * * * ***
consensus_3762#0 -CCTTCGTGACAGCCCCTCTAGTAATAGAATTTCCCGCTCGGTTGATAACTACACGGACC 1025
consensus_3762#1 ACCACACAAAAAACTGTTGCGATAAAAACACCACACATCAGAAAAAACCNNAGATANNTA 714
** * * * * *** * * * * * * * *
consensus_3762#0 GAAGGCAGCAGATGCAAAGGCACTACCAGCTTAATAGACATCCGTTGCAGCAGGCAAAAA 1085
consensus_3762#1 AAAANCAAC-GANGTNAAGGAATAACAAANAGCANAAAANACCANGAAANAAAAANNAAA 773
** ** * ** * **** * ** * * * * ** * * ***
consensus_3762#0 GGCTGTCGAGCAGCAGCAG-CAGTGCC--------------------------------- 1111
consensus_3762#1 AAAAATACAGCAAGANAAGATAAAGCAACNAAAAAAAANANANAAAGAAAGAGAAGAAAA 833
* **** * ** * **
consensus_3762#0 ------------------------------------------------------------
consensus_3762#1 ANAACAAANAAAAAACAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAGACAGANAA 893
consensus_3762#0 ---------------------------
consensus_3762#1 AAAAAAAAAATATACCAAGAAAANAAA 920
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||