cluster # 3767

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Anopheles gambiae
cluster # 3767 cluster # 3767 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3767#0 length = 748 sequences # 1

consensus_3767#1 length = 638 sequences # 2

consensusID : consensus_3767#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 748
fasta sequence

                              [AAGAATNGCCCGAGGATTGGTACCGCTCGCAAAAGCGTGAAAGATCAGCGCAATATAGACGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGATAGAACAGCGGAACCGACCGAAAAGCCACCGAAGTCTGGATTCTTTTTCGTACACGACACGTTCTACAATGATTTCCGTGATGATGCAAATCATGACTACTCAGGGGTGATCCGGAAGTGGGCCGATCGACAATCTTTGATCGGAGAGCTAAAGACGGCACGAATGGAAGATACACGCTTTGGCAGATTTGAAATTTCGCTTGGGATATCCACAGATGTATCAGCACCAAGGAAATTGCGAGCATCTGTTCGTGATAAGCGATTGTCGATTGTTGGCGGCGACAGACATTCTGACGCGATCCCGATATCCGTGGCTGAACTCGTACGGATTTTCTCGAGATGTCCCTTGCAACATCTGTGGCCACTGTCAGGCGCAATATATTGTACAGAACAGCACTCGACACATCTTCGATCCTGCCTACATTTGTGAAA]

[+] EMBL AL693560             [AAGAATNGCCCGAGGATTGGTACCGCTCGCAAAAGCGTGAAAGATCAGCGCAATATAGACGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGATAGAACAGCGGAACCGACCGAAAAGCCACCGAAGTCTGGATTCTTTTTCGTACACGACACGTTCTACAATGATTTCCGTGATGATGCAAATCATGACTACTCAGGGGTGATCCGGAAGTGGGCCGATCGACAATCTTTGATCGGAGAGCTAAAGACGGCACGAATGGAAGATACACGCTTTGGCAGATTTGAAATTTCGCTTGGGATATCCACAGATGTATCAGCACCAAGGAAATTGCGAGCATCTGTTCGTGATAAGCGATTGTCGATTGTTGGCGGCGACAGACATTCTGACGCGATCCCGATATCCGTGGCTGAACTCGTACGGATTTTCTCGAGATGTCCCTTGCAACATCTGTGGCCACTGTCAGGCGCAATATATTGTACAGAACAGCACTCGACACATCTTCGATCCTGCCTACATTTGTGAAA]




>consensus_3767#0
AAGAATNGCCCGAGGATTGGTACCGCTCGCAAAAGCGTGAAAGATCAGCGCAATATAGAC
GTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGC
AAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAA
TACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGT
TCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTC
TATGAGATAAGCGGGATAGAACAGCGGAACCGACCGAAAAGCCACCGAAGTCTGGATTCT
TTTTCGTACACGACACGTTCTACAATGATTTCCGTGATGATGCAAATCATGACTACTCAG
GGGTGATCCGGAAGTGGGCCGATCGACAATCTTTGATCGGAGAGCTAAAGACGGCACGAA
TGGAAGATACACGCTTTGGCAGATTTGAAATTTCGCTTGGGATATCCACAGATGTATCAG
CACCAAGGAAATTGCGAGCATCTGTTCGTGATAAGCGATTGTCGATTGTTGGCGGCGACA
GACATTCTGACGCGATCCCGATATCCGTGGCTGAACTCGTACGGATTTTCTCGAGATGTC
CCTTGCAACATCTGTGGCCACTGTCAGGCGCAATATATTGTACAGAACAGCACTCGACAC
ATCTTCGATCCTGCCTACATTTGTGAAA

consensusID : consensus_3767#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence

                              [AATCGCCCCGAGGNTATATATGGAAGCGATGGGTCTGGACGGCATATTGCAGAGTTCGATAAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGAACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCCGCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATTAGCGCAATATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAACCGACCGAGAAGCCACCGAAATCGGGATTCTTTTTCGTCCACGACACGTTCTACAATGATTTCCGGGATGATGCAAATCATGACTACTCGGGGGTGATCCGGAAGTGGGCCGATCGACAATC]

[+] EMBL AL933425             [AATCGCCCCGAGGNTATATATGGAAGCGATGGGTCTGGACGGCATATTGCAGAGTTCGATAAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGAACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCCGCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATTAGCGCAATATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAA                                                                                                                          ]
[+] EMBL BX624999             [                                                GCAGAGTTCGATAAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGAACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCCGCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATCAGCGCAATATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAACCGACCGAGAAGCCACCGAAATCGGGATTCTTTTTCGTCCACGACACGTTCTACAATGATTTCCGGGATGATGCAAATCATGACTACTCGGGGGTGATCCGGAAGTGGGCCGATCGACAATC]




>consensus_3767#1
AATCGCCCCGAGGNTATATATGGAAGCGATGGGTCTGGACGGCATATTGCAGAGTTCGAT
AAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGA
ACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCC
GCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATTAGCGCAAT
ATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAA
ACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCC
TTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTG
CTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGG
CCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAACCGACCGAGAAGCCACCGAAATCG
GGATTCTTTTTCGTCCACGACACGTTCTACAATGATTTCCGGGATGATGCAAATCATGAC
TACTCGGGGGTGATCCGGAAGTGGGCCGATCGACAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3767#0      ------------------------------------------------------------
consensus_3767#1      AATCGCCCCGAGGNTATATATGGAAGCGATGGGTCTGGACGGCATATTGCAGAGTTCGAT 60
                                                                                  

consensus_3767#0      ------------------------------------------------------------
consensus_3767#1      AAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGA 120
                                                                                  

consensus_3767#0      ------------------------------------------------------------
consensus_3767#1      ACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCC 180
                                                                                  

consensus_3767#0      ------AAGAATNGCCCGAGGATTGGTACCGCTCGCAAAAGCGTGAAAGATCAGCGCAAT 54
consensus_3767#1      GCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATTAGCGCAAT 240
                               *** *   *   *  *  ************************ ********

consensus_3767#0      ATAGACGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAA 114
consensus_3767#1      ATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAA 300
                      ***** ******************************************************

consensus_3767#0      ACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCC 174
consensus_3767#1      ACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCC 360
                      ************************************************************

consensus_3767#0      TTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTG 234
consensus_3767#1      TTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTG 420
                      ************************************************************

consensus_3767#0      CTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGG 294
consensus_3767#1      CTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGG 480
                      ************************************************************

consensus_3767#0      CCGTTCTATGAGATAAGCGGG-ATAGAACAGCGGAACCGACCGAAAAGCCACCGAAGTCT 353
consensus_3767#1      CCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAACCGACCGAGAAGCCACCGAAATCG 540
                      ********************* ********************** *********** ** 

consensus_3767#0      GGATTCTTTTTCGTACACGACACGTTCTACAATGATTTCCGTGATGATGCAAATCATGAC 413
consensus_3767#1      GGATTCTTTTTCGTCCACGACACGTTCTACAATGATTTCCGGGATGATGCAAATCATGAC 600
                      ************** ************************** ******************

consensus_3767#0      TACTCAGGGGTGATCCGGAAGTGGGCCGATCGACAATCTTTGATCGGAGAGCTAAAGACG 473
consensus_3767#1      TACTCGGGGGTGATCCGGAAGTGGGCCGATCGACAATC---------------------- 638
                      ***** ********************************                      

consensus_3767#0      GCACGAATGGAAGATACACGCTTTGGCAGATTTGAAATTTCGCTTGGGATATCCACAGAT 533
consensus_3767#1      ------------------------------------------------------------
                                                                                  

consensus_3767#0      GTATCAGCACCAAGGAAATTGCGAGCATCTGTTCGTGATAAGCGATTGTCGATTGTTGGC 593
consensus_3767#1      ------------------------------------------------------------
                                                                                  

consensus_3767#0      GGCGACAGACATTCTGACGCGATCCCGATATCCGTGGCTGAACTCGTACGGATTTTCTCG 653
consensus_3767#1      ------------------------------------------------------------
                                                                                  

consensus_3767#0      AGATGTCCCTTGCAACATCTGTGGCCACTGTCAGGCGCAATATATTGTACAGAACAGCAC 713
consensus_3767#1      ------------------------------------------------------------
                                                                                  

consensus_3767#0      TCGACACATCTTCGATCCTGCCTACATTTGTGAAA 748
consensus_3767#1      -----------------------------------