cluster # 3773

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3773 cluster # 3773 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3773#0 length = 742 sequences # 1

consensus_3773#1 length = 632 sequences # 2

consensusID : consensus_3773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [CGAGGTTATATTAATCATATAAAACAACAGCCACACTACACCCATTCAACCAACCCGTGTACGTACGTTGACGTTTATTACAATTGCACAGAGTTTTGTTTATAAAAATTTGAGCGACCTGATCGCACGCGATCGCGGCTAGTCCATAAAACGCGACCGAAGGAAGCAACATGCGATATACACGTGTGCCAGTCAANATGTTTATTTGCGCATGTGTGCCACTGTGTATGCAGATCGACCTAAAACACCCAAAGCAAACAAACCGTGTACGTACGTTGCACCGTCTCNCNTTCACAATTGCACAGCAGTTCTCTGTCTACTAACACATTTTGATGCGACCGATCGCACGCGATCGCGGCCTAGCTCCATANAAAACGCGACCGAAGGAAGCAAAGCGATATACACGTGGCCCAGTAAAGTCTCTACTATGCGCACTGCTGTGCCTGTGTCTGCCCGATCGACTAAAACACCGGCTTCGGCACCATGCAGTATGTCGACAATTGCTAACCGAAAACCAAAACAAAACCACACACAACAAATGTGTGCGTATTAGAGCGAGCGAACGTGTGTGAATACCACAAACAACAAAAGGAGCCAACCACACACTGATAACACNCTTAANACATACAACCTAACAAATNAACAGTACAAGTTNATCCTCCTTCGCACATAACAGGNACACCACACAACAACCCACGCCNCTTAAAAAAGTTATCATGTAACATCTTCACAACGGCAACAA]

[+] EMBL AL693668             [CGAGGTTATATTAATCATATAAAACAACAGCCACACTACACCCATTCAACCAACCCGTGTACGTACGTTGACGTTTATTACAATTGCACAGAGTTTTGTTTATAAAAATTTGAGCGACCTGATCGCACGCGATCGCGGCTAGTCCATAAAACGCGACCGAAGGAAGCAACATGCGATATACACGTGTGCCAGTCAANATGTTTATTTGCGCATGTGTGCCACTGTGTATGCAGATCGACCTAAAACACCCAAAGCAAACAAACCGTGTACGTACGTTGCACCGTCTCNCNTTCACAATTGCACAGCAGTTCTCTGTCTACTAACACATTTTGATGCGACCGATCGCACGCGATCGCGGCCTAGCTCCATANAAAACGCGACCGAAGGAAGCAAAGCGATATACACGTGGCCCAGTAAAGTCTCTACTATGCGCACTGCTGTGCCTGTGTCTGCCCGATCGACTAAAACACCGGCTTCGGCACCATGCAGTATGTCGACAATTGCTAACCGAAAACCAAAACAAAACCACACACAACAAATGTGTGCGTATTAGAGCGAGCGAACGTGTGTGAATACCACAAACAACAAAAGGAGCCAACCACACACTGATAACACNCTTAANACATACAACCTAACAAATNAACAGTACAAGTTNATCCTCCTTCGCACATAACAGGNACACCACACAACAACCCACGCCNCTTAAAAAAGTTATCATGTAACATCTTCACAACGGCAACAA]




>consensus_3773#0
CGAGGTTATATTAATCATATAAAACAACAGCCACACTACACCCATTCAACCAACCCGTGT
ACGTACGTTGACGTTTATTACAATTGCACAGAGTTTTGTTTATAAAAATTTGAGCGACCT
GATCGCACGCGATCGCGGCTAGTCCATAAAACGCGACCGAAGGAAGCAACATGCGATATA
CACGTGTGCCAGTCAANATGTTTATTTGCGCATGTGTGCCACTGTGTATGCAGATCGACC
TAAAACACCCAAAGCAAACAAACCGTGTACGTACGTTGCACCGTCTCNCNTTCACAATTG
CACAGCAGTTCTCTGTCTACTAACACATTTTGATGCGACCGATCGCACGCGATCGCGGCC
TAGCTCCATANAAAACGCGACCGAAGGAAGCAAAGCGATATACACGTGGCCCAGTAAAGT
CTCTACTATGCGCACTGCTGTGCCTGTGTCTGCCCGATCGACTAAAACACCGGCTTCGGC
ACCATGCAGTATGTCGACAATTGCTAACCGAAAACCAAAACAAAACCACACACAACAAAT
GTGTGCGTATTAGAGCGAGCGAACGTGTGTGAATACCACAAACAACAAAAGGAGCCAACC
ACACACTGATAACACNCTTAANACATACAACCTAACAAATNAACAGTACAAGTTNATCCT
CCTTCGCACATAACAGGNACACCACACAACAACCCACGCCNCTTAAAAAAGTTATCATGT
AACATCTTCACAACGGCAACAA

consensusID : consensus_3773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence

                              [CCGCCCACGCGTCCGGTGCAATACACAAGATATCGAGACAGTGGAGTGGATACCAGCTGGAAAAGAAGGCAAAACTCGAAAGAGAAGATAATTAATCATATAAAACAACAGCCACACTACACCCAACCAACCAACCCGTGTACGTACGTTGACGTTTATTACAATTGCATAGAGTTTTGTTTATAAAAATTTGAACGACCGATCGCACGCGATCGCAGCTAGTCCATACAACGCGATCGAAGGAAGCAAAGCGATATACACGTGGCCAGTAAAGTTTATTGCGCATGTGTGCATGTGTTGCAGATCGACTAAAACACCGGCTTCGCACCATGCAGTATGTCGAAATTGTTACCGAAAACCAAAACAAAACAAAACAAAAATGTGTGCGTATTAGAGCGAGCGAACGTGTGTTGAATACCACAAACAACCAAAACGGAGCCAACCAAATGATAAAATAAAATAAAACTAAAATAAAAGTAGAGTTATCCTCCTTCGCAATAAAGGAAACCAAAAACACACCCACGCCCTTAAAAAAGTTATCATGTAACATCTTACAACGGCAACAACACCCGAAACTTGAATGGGGGAAACAAACTAAAAAAAAATAATGCAAAACCAGAACTTACCGAAAA]

[+] EMBL BM641788             [CCGCCCACGCGTCCGGTGCAATACACAAGATATCGAGACAGTGGAGTGGATACCAGCTGGAAAAGAAGGCAAAACTCGAAAGAGAAGATAATTAATCATATAAAACAACAGCCACACTACACCCAACCAACCAACCCGTGTACGTACGTTGACGTTTATTACAATTGCATAGAGTTTTGTTTATAAAAATTTGAACGACCGATCGCACGCGATCGCAGCTAGTCCATACAACGCGATCGAAGGAAGCAAAGCGATATACACGTGGCCAGTAAAGTTTATTGCGCATGTGTGCATGTGTTGCAGATCGACTAAAACACCGGCTTCGCACCATGCAGTATGTCGAAATTGTTACCGAAAACCAAAACAAAACAAAACAAAAATGTGTGCGTATTAGAGCGAGCGAACGTGTGTTGAATACCACAAACAACCAAAACGGAGCCAACCAAATGATAAAATAAAATAAAACTAAAATAAAAGTAGAGTTATCCTCCTTCGCAATAAAGGAAACCAAAAACACACCCACGCCCTTAAAAAAGTTATCATGTAACATCTTACAACGGCAACAACACCCGAA                                                          ]
[+] EMBL BM645285             [                            ccgATCGAGACAGTGGAGTGGATACCAGCAGGAAAAGAAGGCAAAACTCGAAAGAGAAGATAATTAATCATATAAAACAACAGCCACACTACACCCAACCAACCAACCCGTGTACGTACGTTGACGTTTATTACAATTGCACAGAGTTTTGTTTATAAAAATTTGAACGACCGATCGCACGCGATCGCGGCTAGTCCATACAACGCGACCGAAGGAAGCAAAGCGATATACACGTGGCCAGTAAAGTTTATTGCGCATGTGAGCATGTGTTGCAGATCGACTACAACACCGGCTTCGCACCATGCAGTATGTCGAAATTGTTACCGAAAACCAAAACAAAACAAAACAAAAATGTGTGCGTATTAGAGCGAGCGAACGTGTG TGAATACCACAAACAACCAAAACGGAGCCAACCAAATGATAAAATAAAATAAAACTAAAATAAAAGTAAAGTTATCCTCCTTCGCAATAAAGGAAACCAAAAACACACCCACGCCCTT AAAAAGTTATCATGTAACATCTTACAACGGCAACAACACCCGAAACTTGAATGGGGGAAACAAACTAAAAAAAAATAATGCAAAACCAGAACTTACCGAAAA]




>consensus_3773#1
CCGCCCACGCGTCCGGTGCAATACACAAGATATCGAGACAGTGGAGTGGATACCAGCTGG
AAAAGAAGGCAAAACTCGAAAGAGAAGATAATTAATCATATAAAACAACAGCCACACTAC
ACCCAACCAACCAACCCGTGTACGTACGTTGACGTTTATTACAATTGCATAGAGTTTTGT
TTATAAAAATTTGAACGACCGATCGCACGCGATCGCAGCTAGTCCATACAACGCGATCGA
AGGAAGCAAAGCGATATACACGTGGCCAGTAAAGTTTATTGCGCATGTGTGCATGTGTTG
CAGATCGACTAAAACACCGGCTTCGCACCATGCAGTATGTCGAAATTGTTACCGAAAACC
AAAACAAAACAAAACAAAAATGTGTGCGTATTAGAGCGAGCGAACGTGTGTTGAATACCA
CAAACAACCAAAACGGAGCCAACCAAATGATAAAATAAAATAAAACTAAAATAAAAGTAG
AGTTATCCTCCTTCGCAATAAAGGAAACCAAAAACACACCCACGCCCTTAAAAAAGTTAT
CATGTAACATCTTACAACGGCAACAACACCCGAAACTTGAATGGGGGAAACAAACTAAAA
AAAAATAATGCAAAACCAGAACTTACCGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3773#0      CGAGGTTATATTAATCATATAAAACAACAGCCACACTACACCCATTCAACCAACCCGTGT 60
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      ACGTACGTTGACGTTTATTACAATTGCACAGAGTTTTGTTTATAAAAATTTGAGCGACCT 120
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GATCGCACGCGATCGCGGCTAGTCCATAAAACGCGAC-CGAAGGAAGCAACATGCGATAT 179
consensus_3773#1      ------CCGCCCACGCGTCCGGTGCAATACACAAGATATCGAGACAGTGGAGTG-GATAC 53
                             ***   **** *  ** **  * **  **     **  **     ** **** 

consensus_3773#0      ACACGTGTGCCAGTCAANATGTTTATTTGCGCATGTGTGCCACTGTGTATGCAGATCGAC 239
consensus_3773#1      CAGCTGGAAAAGAAGGCAAAACTCGAAAGAGAAGATAATTAATCATATAAAACAACAGCC 113
                         *  *           *   *     * * *  *     *   * **     *  * *

consensus_3773#0      CTAAAACACCCAAAGCAAACAAACCGTGTACGTACGTTGCACCGTCTCNCNTTCACAATT 299
consensus_3773#1      ACACTACACCCAAC-CAACCAACCCGTGTACGTACGTTGA------CGTTTATTACAATT 166
                        *  ********  *** *** ****************             * ******

consensus_3773#0      GCACAGCAGTTCTCTGTCTACTAACACATTTTGATGCGACCGATCGCACGCGATCGCGGC 359
consensus_3773#1      GCATAG-AGTTTT--GTTTATAAAAA---TTTGA-ACGACCGATCGCACGCGATCGCAGC 219
                      *** ** **** *  ** **  ** *   *****  ********************* **

consensus_3773#0      CTAGCTCCATANAAAACGCGACCGAAGGAAGCAAAGCGATATACACGTGGCCCAGTAAAG 419
consensus_3773#1      -TAG-TCCATACAA--CGCGATCGAAGGAAGCAAAGCGATATACACGTGGCC-AGTAAAG 274
                       *** ****** **  ***** ****************************** *******

consensus_3773#0      TCTCTACTATGCGCACTGCTGTGCCTGTGTCTGCCCGATCGACTAAAACACCGGCTTCGG 479
consensus_3773#1      TTTAT----TGCGCA----TGTGTGCATGTGTTGCAGATCGACTAAAACACCGGCTTCG- 325
                      * * *    ******    ****    *** *  * *********************** 

consensus_3773#0      CACCATGCAGTATGTCGACAATTGCTAACCGAAAACCAAAACAAAACCACACACAACAAA 539
consensus_3773#1      CACCATGCAGTATGTCGA-AATTGTTA-CCGAAAACCAAAACAAAACAAAACAAAA---A 380
                      ****************** ***** ** ******************* * *** **   *

consensus_3773#0      TGTGTGCGTATTAGAGCGAGCGAACGTGTGT-GAATACCACAAACAACAAAA--GGAGCC 596
consensus_3773#1      TGTGTGCGTATTAGAGCGAGCGAACGTGTGTTGAATACCACAAACAACCAAAACGGAGCC 440
                      ******************************* **************** ***  ******

consensus_3773#0      AACCACACACTGATAACACNCTTAANACATACAACCTAACAAATNAACAGTACAAGTTNA 656
consensus_3773#1      AACCAAA---TGATAAAA----TAAAATA---AAACTAA--AATAAA-AGTAGAG--TTA 485
                      ***** *   ****** *    *** * *   ** ****  *** ** **** *   * *

consensus_3773#0      TCCTCCTTCGCACATAACAGGNACACCACACAACAACCCACGCCNCTTAAAAAAGTTATC 716
consensus_3773#1      TCCTCCTTCGCA-ATA--AAGGAAACCAAAAACACACCCACGCCC-TTAAAAAAGTTATC 541
                      ************ ***  * * * **** * *   *********  **************

consensus_3773#0      ATGTAACATCTTCACAACGGCAACAA---------------------------------- 742
consensus_3773#1      ATGTAACATCTT-ACAACGGCAACAACACCCGAAACTTGAATGGGGGAAACAAACTAAAA 600
                      ************ *************                                  

consensus_3773#0      --------------------------------
consensus_3773#1      AAAAATAATGCAAAACCAGAACTTACCGAAAA 632