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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1190 fasta sequence
[CAAGATCGCCCCNGGTTTTATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATCTCTTTTTTTTTTTTTTGGGGACAAGAAAAGGANGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCCGCGCTATCAACAGATNAGTTACGTTTTNAANACCAAGTGTGTATTTAGNTGTGTCCATATCAAAGGCAACAACAGAGTCCATGCGNAACAACAGCATCGCTATACCGCAGATCATNATCCANCATCCGCATCAGCAACCGTTGGCCCAAACGTGNATCAATACTCAACANTTTCCTAATTAGGGNACACATACCAATTACTTAATTATAACCAGNCACGTAGGATTAAANCNTNCATTCCGTTACATAGCCCTTCTCGGTTTCCACATTTTGTCNACCACTTTCGTTTAACNCACANTTTGGTGTACACNTTGGGAAACCACNAAATAGATTTACCCCTTNAATCCACCANATCANNACCCNGACTATGCTCACACNAACTAAGTCAACTCGGAGANCCCCGGAGAGANCTAGNCCCGACGTTAAATNTACCCAGGTTGACCCAGTCTNGTAAAATTNCAGCCCCCAGGATTTTCTGGAGCCAGGGGGNTGACACCTATGCCAAGAACTAGAACTTCTTGGGGCTTTCGCAAGGGCGGAGTACAATTTAAATAAACCCCCCGGNATGTCAATNCAAANTGGAGGGNAGCTATTTACCAANATTATTAAAACTTTANAGGGTNAGCAACGGGACGAGCGGNACTATACCGAGCGACACAGANAACNTTAAAAAGTTCGCGGAGTATTNCGGAANCNCCNAATTTANANGGCAAAAATTTATGTCCNNACCCANTTTCACCAAGTNTAANCTTTTNTAACGGTCCTTACCAATGGACGCCACCATTTACCCACTGATAAAGTNGGGCCTTTTACACCATAACCCGACGAAACAACCCCNCCCCATAGGAAAAGAGACNAACAAGCACCAANCNAGTCAACAGCATAACCACATGGGGGTATCCGGNNTGTCANANTCACACACCNCGTGTGGGCTGNAANTTTATGACAGAAAGCCCGGCGACAAANACNCAATCNACCGGAGCCNGGCACTTAAATGCCAGATACACCCCCGATGAGAACCNCTGGCAAAC]
[+] EMBL AL693807 [CAAGATCGCCCCNGGTTTTATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATCTCTTTTTTTTTTTTTTGGGGACAAGAAAAGGANGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCCGCGCTATCAACAGATNAGTTACGTTTTNAANACCAAGTGTGTATTTAGNTGTGTCCATATCAAAGGCAACAACAGAGTCCATGCGNAACAACAGCATCGCTATACCGCAGATCATNATCCANCATCCGCATCAGCAACCGTTGGCCCAAACGTGNATCAATACTCAACANTTTCCTAATTAGGGNACACATACCAATTACTTAATTATAACCAGNCACGTAGGATTAAANCNTNCATTCCGTTACATAGCCCTTCTCGGTTTCCACATTTTGTCNACCACTTTCGTTTAACNCACANTTTGGTGTACACNTTGGGAAACCACNAAATAGATTTACCCCTTNAATCCACCANATCANNACCCNGACTATGCTCACACNAACTAAGTCAACTCGGAGANCCCCGGAGAGANCTAGNCCCGACGTTAAATNTACCCAGGTTGACCCAGTCTNGTAAAATTNCAGCCCCCAGGATTTTCTGGAGCCAGGGGGNTGACACCTATGCCAAGAACTAGAACTTCTTGGGGCTTTCGCAAGGGCGGAGTACAATTTAAATAAACCCCCCGGNATGTCAATNCAAANTGGAGGGNAGCTATTTACCAANATTATTAAAACTTTANAGGGTNAGCAACGGGACGAGCGGNACTATACCGAGCGACACAGANAACNTTAAAAAGTTCGCGGAGTATTNCGGAANCNCCNAATTTANANGGCAAAAATTTATGTCCNNACCCANTTTCACCAAGTNTAANCTTTTNTAACGGTCCTTACCAATGGACGCCACCATTTACCCACTGATAAAGTNGGGCCTTTTACACCATAACCCGACGAAACAACCCCNCCCCATAGGAAAAGAGACNAACAAGCACCAANCNAGTCAACAGCATAACCACATGGGGGTATCCGGNNTGTCANANTCACACACCNCGTGTGGGCTGNAANTTTATGACAGAAAGCCCGGCGACAAANACNCAATCNACCGGAGCCNGGCACTTAAATGCCAGATACACCCCCGATGAGAACCNCTGGCAAAC]
consensusID : consensus_3780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence
[AGAATTCGCACGAGGGAATTTTGCTCAATCGCTTATTTTTTGGTGATATGACATTTTTGTTTGTTTGTGAGGACCTTCATCAAGAACACATCTTAGATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATTCTTTTTTTTTTTTTGGGGACAAGAAAAGGAAGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCGCGCTATCAAAGATAGTAGTTTAAACCAGTGTGTATTGTGTGTCATTCAAAGCAAAACAAACAACAAACAACAGCATCCTTACGCACATCATATCCACATCGCATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTATTACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCACGCCGCACACACACACCGGCCGGGCGCGTATCGTCATTATCCCGTTGCAGTATCAATATTGTGAAGGATAACCGCAAAGGACTCATTATAGAAGATGCTCGAAATAATCGTTGACCATAGATTTCAATAATATTTGTAGCCCAAAATGTTAAACAACCCAGACAACAACATTTTGTGTTTCACTGATCAAACGATCTATTTCTCTGTTCACCGAACAATCTGTTGGCATACATTTACATTTACCATCAACAAACTCCTATCTACTGCATGTGTTTCAGTGCCAACACTCACACAGTCAGACAGACGGGCACAGTGTACGGCACAACATAAATCCCCTTGCCTGTGTCACATAATCGCGGGGGGCTTCTGTGTTAATGTCTAGAAAGCGAATTGGCCACAGGATGCCGACAGGAAAGGAACTAT]
[+] EMBL BX620818 [AGAATTCGCACGAGGGAATTTTGCTCAATCGCTTATTTTTTGGTGATATGACATTTTTGTTTGTTTGTGAGGACCTTCATCAAGAACACATCTTAGATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATTCTTTTTTTTTTTTTGGGGACAAGAAAAGGAAGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCGCGCTATCAAAGATAGTAGTTTAAACCAGTGTGTATTGTGTGTCATTCAAAGCAAAACAAACAACAAACAACAGCATCCTTACGCACATCATATCCACATCGCATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTATTACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCACGCCGCACACACACACCGGCCGGGCGCGTATCGTCATTATCCC ]
[+] EMBL BX629120 [ ACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCGCGCTATCAAAGATAGTAGTTTGAACCAGTGTGTATTGTGTGTCATTCAAAGCAAAACAAACAACAAACAACAGCATCCTTACGCACATCATATCCACATCGCATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTATTACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCACCCCGCACACACACACCGGCCGAGCGCGTATCGTCATTATCCCGTTGCAGTATCAATATTGTGAAGGATAACCGCAAAGGACTCATTATAGAAGATGCTCGAAATAATCGTTGACCATAGATTTCAATAATATTTGTAGCCCAAAATGTTAAACAACCCAGACAACAACATTTTGTGTTTCACTGATCAAACGATCTATTTCTCTGTTCACCGAACAATCTGTTGGCATACATTTACATTTACCATCAACAAACTCCTATCTACTGCATGTGTTTCAGTGCCAACACTCACACAGTCAGACAGACGGGCACAGTGTACGGCACAACATAAATCCCCTTGCCTGTGTCACATAATCGCGGGGGGCTTCTGTGTTAATGTCTAGAAAGCGAATTGGCCACAGGATGCCGACAGGAAAGGAACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3780#0 ------------------------------------------------------------
consensus_3780#1 AGAATTCGCACGAGGGAATTTTGCTCAATCGCTTATTTTTTGGTGATATGACATTTTTGT 60
consensus_3780#0 -----------------CAAGATCGCCCCNGGTTTTATACGAAATTTGTTTTTGACACAG 43
consensus_3780#1 TTGTTTGTGAGGACCTTCATCAAGAACACATCTTAGATACGAAATTTGTTTTTGACACAG 120
** * * * ** ************************
consensus_3780#0 TGGCATGGAATCTCTCTTGAAAGCCATCTCTTTTTTTTTTTTTTGGGGACAAGAAAAGGA 103
consensus_3780#1 TGGCATGGAATCTCTCTTGAAAGCCATTC--TTTTTTTTTTTTTGGGGACAAGAAAAGGA 178
*************************** *****************************
consensus_3780#0 NGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCCGCG 163
consensus_3780#1 AGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATC-GCG 237
******************************************************* ***
consensus_3780#0 CTATCAACAGATNAGTTACGTTTTNAANACCAAGTGTGTATTTAGNTGTGTCCATATCAA 223
consensus_3780#1 CTATCAA-AGATA------GTAGTTTAAACCA-GTGTGTATTGTGTGTCATTCAAAGCAA 289
******* **** ** * * **** ********* * * ** * ***
consensus_3780#0 AGGCAACAACAGAGTCCATGCGNAACAACAGCATCGCTATACCGCAGATCATNATCCANC 283
consensus_3780#1 AACAAACAACA------------AACAACAGCATCCTTA---CGCACATCATA------- 327
* ******* ************ ** **** *****
consensus_3780#0 ATCCGCATCAGCAACCGTTGGCCCAAACGTGNATCAATACTCAACANTTTCCTAATTAGG 343
consensus_3780#1 -TCCACATCG-----CATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTAT 381
*** **** * * * * * * * ****** * ** * * ****
consensus_3780#0 GNACACATACCAATTACTTAATTATAACCAGNCACGT---AGGATTAAANCNTNCATTCC 400
consensus_3780#1 TACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCAC 441
* ** * ** * * ** * ** * * * ** *** * *
consensus_3780#0 GTTACATAGCCCTTCTCGGTTTCCACATTTTGTCNACCACTTTCGTTTAACNCACANTTT 460
consensus_3780#1 GCCGCACACACACACCGGCCGGGCGCGTATCGTCATTA--TCCCGTTGCAGTATCAATAT 499
* ** * * * * * * * * *** * **** * ** * *
consensus_3780#0 GGTGTACACNTTGGGAAACCACNAAATAGATTTACCCCTTNAATCCACCANATCANNACC 520
consensus_3780#1 TGTGAA------GGATAACCGCAAA--GGACTCATTATAGAAGATGCTCGAAATAAT-CG 550
*** * ** **** * ** ** * * * * * * *
consensus_3780#0 CNGACTAT-GCTCACACNAACTAAGTCAACTCGGAGANCCCCGGAGAGANCTAGNCCCGA 579
consensus_3780#1 TTGACCATAGATTTCAATAATATTTGTAGCCC--AAAATGTTAAACAACCCAGACAACAA 608
*** ** * * ** ** * * * * * * * * * *
consensus_3780#0 CGTTAAATNTACCCAGGTTGACCCAGTCTNGTAAAATTNCAGCCCCCAGGATTTTCTGGA 639
consensus_3780#1 CATTTTGTGTTTCACTGATCAAACGATCTATT----TCTCTGTTCACCGAACAATCTGTT 664
* ** * * * * * * * *** * * * * * * * * ****
consensus_3780#0 GCCAGGGGGNTGACACCTAT-GCCAA-GAACTAGAACTTCTTGGGGCTTTCGCAAGGGCG 697
consensus_3780#1 GGCATACATTT-ACATTTACCATCAACAAACTCCTATCTACTGCATGTGTTTCAGTGCCA 723
* ** * *** ** *** **** * * ** * * ** * *
consensus_3780#0 GAGTACAATTTAAATAAACCCCCCGGNATGTCAATNCAAANTGGAGGGNAGCTATTTACC 757
consensus_3780#1 ACACTCA-CACAGTCAGACAGACGGGCACAGTG-TACGGCACAACATAAATCCCCTTGCC 781
** * * ** * ** * * * * * ** **
consensus_3780#0 AANATTATTAAAACTTTANAGGGTNAGCAACGGGACGAGCGGNACTATACCGAGCGACAC 817
consensus_3780#1 TGTGTCACATAATCGCGGGGGGCTT-----CTGTGTTAATGTCTAGAAAGCGAATTGGCC 836
* * ** * ** * * * * * * * *** *
consensus_3780#0 AGANAACNTTAAAAAGTTCGCGGAGTATTNCGGAANCNCCNAATTTANANGGCAAAAATT 877
consensus_3780#1 ACAGGATGCCGACAGGAAAG-GAACTAT-------------------------------- 863
* * * * * * * * * ***
consensus_3780#0 TATGTCCNNACCCANTTTCACCAAGTNTAANCTTTTNTAACGGTCCTTACCAATGGACGC 937
consensus_3780#1 ------------------------------------------------------------
consensus_3780#0 CACCATTTACCCACTGATAAAGTNGGGCCTTTTACACCATAACCCGACGAAACAACCCCN 997
consensus_3780#1 ------------------------------------------------------------
consensus_3780#0 CCCCATAGGAAAAGAGACNAACAAGCACCAANCNAGTCAACAGCATAACCACATGGGGGT 1057
consensus_3780#1 ------------------------------------------------------------
consensus_3780#0 ATCCGGNNTGTCANANTCACACACCNCGTGTGGGCTGNAANTTTATGACAGAAAGCCCGG 1117
consensus_3780#1 ------------------------------------------------------------
consensus_3780#0 CGACAAANACNCAATCNACCGGAGCCNGGCACTTAAATGCCAGATACACCCCCGATGAGA 1177
consensus_3780#1 ------------------------------------------------------------
consensus_3780#0 ACCNCTGGCAAAC 1190
consensus_3780#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||