cluster # 3782

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Anopheles gambiae
cluster # 3782 cluster # 3782 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3782#0 length = 488 sequences # 2

consensus_3782#1 length = 402 sequences # 1

consensusID : consensus_3782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 488
fasta sequence

                              [CCG-GTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAACAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCTTGTTAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGC]

[+] EMBL BM605582             [CCG GTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAACAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCTTGTTAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGC]
[+] EMBL BM637891             [CCGCGTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAACAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCTTGTGAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAATGAAATGATTAGCTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTG     ]




>consensus_3782#0
CCGGTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAA
CAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCT
TGTTAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGAC
CTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAA
TCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTATGGTTCCAA
CTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGT
CGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGG
TCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATT
TTGAAGGC

consensusID : consensus_3782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [CCGCCCACGCGTCCGGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTTTGACGAGATTGACCGTTTAGGGGCAGATTACTAAAAATATCACACTGTCTATTGATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGCATTT]

[+] EMBL BM623541             [CCGCCCACGCGTCCGGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTTTGACGAGATTGACCGTTTAGGGGCAGATTACTAAAAATATCACACTGTCTATTGATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGCATTT]




>consensus_3782#1
CCGCCCACGCGTCCGGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCC
GACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGC
AAACTGAAGCAGGGCAGCAACAAGTTTGACGAGATTGACCGTTTAGGGGCAGATTACTAA
AAATATCACACTGTCTATTGATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCAC
CAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGT
CCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAA
CAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGCATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3782#0      CCGGTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAA 60
consensus_3782#1      ------------------------------------------------------------
                                                                                  

consensus_3782#0      CAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCT 120
consensus_3782#1      ------------------------------------------------------------
                                                                                  

consensus_3782#0      TGTTAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGAC 180
consensus_3782#1      -------------------------CCGCCCACGCGTCCGGTTGGCTCCTGCTCACCGAC 35
                                               ** * * **      ********************

consensus_3782#0      CTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAA 240
consensus_3782#1      CTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAA 95
                      ************************************************************

consensus_3782#0      TCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGT---------- 290
consensus_3782#1      TCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTTTGACGAGAT 155
                      **************************************************          

consensus_3782#0      ---------------------------------------------ATGGTTCCAACTCCG 305
consensus_3782#1      TGACCGTTTAGGGGCAGATTACTAAAAATATCACACTGTCTATTGATGGTTCCAACTCCG 215
                                                                   ***************

consensus_3782#0      GTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATC 365
consensus_3782#1      GTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATC 275
                      ************************************************************

consensus_3782#0      CATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGG 425
consensus_3782#1      CATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGG 335
                      ************************************************************

consensus_3782#0      AGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAA 485
consensus_3782#1      AGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAA 395
                      ************************************************************

consensus_3782#0      GGC---- 488
consensus_3782#1      GGCATTT 402
                      ***