cluster # 3787

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Anopheles gambiae
cluster # 3787 cluster # 3787 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3787#0 length = 942 sequences # 2

consensus_3787#1 length = 638 sequences # 1

consensusID : consensus_3787#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 942
fasta sequence

                              [CCGGCAAAAGCAAAAGTTTTTGATCGTTTTTGGGCATCGTGACGCATAGAAACAATCCTTACCAAAAAAAAACCCCCCCGGGTTCTGATCGTTCCCCATTCTCCGATCTTCCTCCCTTCCAAACAGTGCGTGTGTGTTTGTGTCTTGCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCCGAACTACTCCTACTCCTCCTACTCCGCGAATGGTGGCCGGCAGGACGGTGTCGGTGCGCCCAGCAGCGCTGCCAACAGTAGTGCACCGAACATAACCACCACCGCCGGCGCATCCAGCAACGGCGGGGCCAGCATAGGCGGTGGAGAAGGGCCCGGCGGCATGTCTTCGCCCACGCACACCCGGTTCGGGCGCGACTTTCACCACTCCGATCATGAAGGTATTTCATTTGCCGGCATGACGGACACAAGCGACGACATTCCCGGCATCGGGCAGTATGAGGATTTTCACACAATCGACTGGCAGCGGGACATTGCCCGGGATCGTATGCGCCATCGGTACATAGTGAAAAAGCGGCAGGACTCGTTCTGGGATCTTTTAAAGGGTGCACACGATG]

[+] EMBL BM582331             [CCGGCAAAAGCAAAAGTTTTTGATCGTTTTTGGGCATCGTGACGCATAGAAACAATCCTTACCAAAAAAAAACCCCCCCGGGTTCTGATCGTTCCCCATTCTCCGATCTTCCTCCCTTCCAAACAGTGCGTGTGTGTTTGTGTCTTGCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM628905             [                                                                                                                                                                                                                                                                ccgGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCCGAACTACTCCTACTCCTCCTACTCCGCGAATGGTGGCCGGCAGGACGGTGTCGGTGCGCCCAGCAGCGCTGCCAACAGTAGTGCACCGAACATAACCACCACCGCCGGCGCATCCAGCAACGGCGGGGCCAGCATAGGCGGTGGAGAAGGGCCCGGCGGCATGTCTTCGCCCACGCACACCCGGTTCGGGCGCGACTTTCACCACTCCGATCATGAAGGTATTTCATTTGCCGGCATGACGGACACAAGCGACGACATTCCCGGCATCGGGCAGTATGAGGATTTTCACACAATCGACTGGCAGCGGGACATTGCCCGGGATCGTATGCGCCATCGGTACATAGTGAAAAAGCGGCAGGACTCGTTCTGGGATCTTTTAAAGGGTGCACACGATG]




>consensus_3787#0
CCGGCAAAAGCAAAAGTTTTTGATCGTTTTTGGGCATCGTGACGCATAGAAACAATCCTT
ACCAAAAAAAAACCCCCCCGGGTTCTGATCGTTCCCCATTCTCCGATCTTCCTCCCTTCC
AAACAGTGCGTGTGTGTTTGTGTCTTGCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTT
CGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTG
CTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCA
GCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGT
CTTATCAGTCAGTTGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGAC
ACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTAC
CGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCA
CCAACCCGAACTACTCCTACTCCTCCTACTCCGCGAATGGTGGCCGGCAGGACGGTGTCG
GTGCGCCCAGCAGCGCTGCCAACAGTAGTGCACCGAACATAACCACCACCGCCGGCGCAT
CCAGCAACGGCGGGGCCAGCATAGGCGGTGGAGAAGGGCCCGGCGGCATGTCTTCGCCCA
CGCACACCCGGTTCGGGCGCGACTTTCACCACTCCGATCATGAAGGTATTTCATTTGCCG
GCATGACGGACACAAGCGACGACATTCCCGGCATCGGGCAGTATGAGGATTTTCACACAA
TCGACTGGCAGCGGGACATTGCCCGGGATCGTATGCGCCATCGGTACATAGTGAAAAAGC
GGCAGGACTCGTTCTGGGATCTTTTAAAGGGTGCACACGATG

consensusID : consensus_3787#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [CCGGCAAGAAGAATCTATCGTCGTGGAATTTTTGCATTCGCGTTCGTGTACGTGCATCAAATCCGGCCCTCCAGTTGGCACGATCACGGTTGGAACCGTCGGACGGTGGTCAAAAAACAAAAGTTTCGTGTAAACAACGGGATTGCAATAGCAGAACACATACTGTATGGTGGGGTGTGCATTACCCTGGCCGTGTGAAGGAATTCTGAACGTGCGTGTGTGTTTGTGTATTGCGTATCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTGGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCC]

[+] EMBL BM593669             [CCGGCAAGAAGAATCTATCGTCGTGGAATTTTTGCATTCGCGTTCGTGTACGTGCATCAAATCCGGCCCTCCAGTTGGCACGATCACGGTTGGAACCGTCGGACGGTGGTCAAAAAACAAAAGTTTCGTGTAAACAACGGGATTGCAATAGCAGAACACATACTGTATGGTGGGGTGTGCATTACCCTGGCCGTGTGAAGGAATTCTGAACGTGCGTGTGTGTTTGTGTATTGCGTATCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTGGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCC]




>consensus_3787#1
CCGGCAAGAAGAATCTATCGTCGTGGAATTTTTGCATTCGCGTTCGTGTACGTGCATCAA
ATCCGGCCCTCCAGTTGGCACGATCACGGTTGGAACCGTCGGACGGTGGTCAAAAAACAA
AAGTTTCGTGTAAACAACGGGATTGCAATAGCAGAACACATACTGTATGGTGGGGTGTGC
ATTACCCTGGCCGTGTGAAGGAATTCTGAACGTGCGTGTGTGTTTGTGTATTGCGTATCG
TATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCT
GAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTT
CCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCC
ACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTGGGCAGCAAGCCCGGC
AAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTG
ACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATG
ATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3787#0      ------------------------------------------------------------
consensus_3787#1      CCGGCAAGAAGAATCTATCGTCGTGGAATTTTTGCATTCGCGTTCGTGTACGTGCATCAA 60
                                                                                  

consensus_3787#0      --------------------CCGGCAAAAGCAAAAGTTTTTGATCGTTTTTGGGCATCGT 40
consensus_3787#1      ATCCGGCCCTCCAGTTGGCACGATCACGGTTGGAACCGTCGGACGGTGGTCAAAAAACAA 120
                                          *   **       **   *  **  **  *     * *  

consensus_3787#0      GA--CGCATAGAAACAATCC--TTACCAAAAAAAAACCCCCCCGGGTTCTGATCGTTCCC 96
consensus_3787#1      AAGTTTCGTGTAAACAACGGGATTGCAATAGCAGAACACATACTGTATGGTGGGGTGTGC 180
                       *    * *  ******     ** * * *  * *** *   * *  *      **   *

consensus_3787#0      CATTCTCCGATCTTCCTCCC---TTCCAAACAGTGCGTGTGTGTTTGTGTCTTGCGTAT- 152
consensus_3787#1      ATTACCCTGGCCGTGTGAAGGAATTCTGAAC-GTGCGTGTGTGTTTGTGTATTGCGTATC 239
                        * * * *  * *         ***  *** ****************** ******** 

consensus_3787#0      ----GTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGC 208
consensus_3787#1      GTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGC 299
                          ********************************************************

consensus_3787#0      TGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTT 268
consensus_3787#1      TGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTT 359
                      ************************************************************

consensus_3787#0      TCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGC 328
consensus_3787#1      TCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGC 419
                      ************************************************************

consensus_3787#0      CACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGG 388
consensus_3787#1      CACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTGGGCAGCAAGCCCGG 479
                      ********************************************* **************

consensus_3787#0      CAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCT 448
consensus_3787#1      CAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCT 539
                      ************************************************************

consensus_3787#0      GACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCAT 508
consensus_3787#1      GACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCAT 599
                      ************************************************************

consensus_3787#0      GATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCCGAACTACTCCTACTCCTCCTA 568
consensus_3787#1      GATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCC--------------------- 638
                      ***************************************                     

consensus_3787#0      CTCCGCGAATGGTGGCCGGCAGGACGGTGTCGGTGCGCCCAGCAGCGCTGCCAACAGTAG 628
consensus_3787#1      ------------------------------------------------------------
                                                                                  

consensus_3787#0      TGCACCGAACATAACCACCACCGCCGGCGCATCCAGCAACGGCGGGGCCAGCATAGGCGG 688
consensus_3787#1      ------------------------------------------------------------
                                                                                  

consensus_3787#0      TGGAGAAGGGCCCGGCGGCATGTCTTCGCCCACGCACACCCGGTTCGGGCGCGACTTTCA 748
consensus_3787#1      ------------------------------------------------------------
                                                                                  

consensus_3787#0      CCACTCCGATCATGAAGGTATTTCATTTGCCGGCATGACGGACACAAGCGACGACATTCC 808
consensus_3787#1      ------------------------------------------------------------
                                                                                  

consensus_3787#0      CGGCATCGGGCAGTATGAGGATTTTCACACAATCGACTGGCAGCGGGACATTGCCCGGGA 868
consensus_3787#1      ------------------------------------------------------------
                                                                                  

consensus_3787#0      TCGTATGCGCCATCGGTACATAGTGAAAAAGCGGCAGGACTCGTTCTGGGATCTTTTAAA 928
consensus_3787#1      ------------------------------------------------------------
                                                                                  

consensus_3787#0      GGGTGCACACGATG 942
consensus_3787#1      --------------