cluster # 379

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Anopheles gambiae
cluster # 379 cluster # 379 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_379#0 length = 790 sequences # 1

consensus_379#1 length = 710 sequences # 1

consensusID : consensus_379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence

                              [CGTAATTAGTGTGACACANTCCTTTTAAAACAGGCAATTTATCGAATAGGCAAGAGTTTTTAATTTCATAATTACTTCAGCGTTACGATATTAGTCGGCACGATTCAGCGACCCATTAAGAGTGGCTTTCAATGTGTTCTTGCGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACNAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGNCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCNCCNCCTATTACTACTACTATTTACTACTACTACCACTACTATTTCATACTTGAATTAACTACTNC]

[+] EMBL BX626492             [CGTAATTAGTGTGACACANTCCTTTTAAAACAGGCAATTTATCGAATAGGCAAGAGTTTTTAATTTCATAATTACTTCAGCGTTACGATATTAGTCGGCACGATTCAGCGACCCATTAAGAGTGGCTTTCAATGTGTTCTTGCGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACNAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGNCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCNCCNCCTATTACTACTACTATTTACTACTACTACCACTACTATTTCATACTTGAATTAACTACTNC]




>consensus_379#0
CGTAATTAGTGTGACACANTCCTTTTAAAACAGGCAATTTATCGAATAGGCAAGAGTTTT
TAATTTCATAATTACTTCAGCGTTACGATATTAGTCGGCACGATTCAGCGACCCATTAAG
AGTGGCTTTCAATGTGTTCTTGCGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTG
TTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTT
GCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAG
TGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAA
TGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGC
CTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACC
AACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACNAACATTTA
AAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTG
ATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGNCTATGATAACTCGCAAAAAAG
ATATTTAAAACATAATCATCTTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTAC
TACCNCCNCCTATTACTACTACTATTTACTACTACTACCACTACTATTTCATACTTGAAT
TAACTACTNC

consensusID : consensus_379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [CAGAATCGGNCACGAGGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACAAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGTCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCACCACTATTACTACTACTATTTACTACTACTACCACTACTATTCATACTTGAATTAACTACTTCCCTCCCTGTTCTACTAGGCTAACGATTATGATGATGCTAAGAGCGTAAGT]

[+] EMBL BX467366             [CAGAATCGGNCACGAGGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACAAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGTCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCACCACTATTACTACTACTATTTACTACTACTACCACTACTATTCATACTTGAATTAACTACTTCCCTCCCTGTTCTACTAGGCTAACGATTATGATGATGCTAAGAGCGTAAGT]




>consensus_379#1
CAGAATCGGNCACGAGGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTT
GCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGT
GCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTC
GTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAA
CCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGC
AAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAG
GTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACAAACATTTAAAAGAGT
GTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTG
TAAGTTGCAAAGAAGCCCAGATTAGTTTTGGTCTATGATAACTCGCAAAAAAGATATTTA
AAACATAATCATCTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCACCA
CTATTACTACTACTATTTACTACTACTACCACTACTATTCATACTTGAATTAACTACTTC
CCTCCCTGTTCTACTAGGCTAACGATTATGATGATGCTAAGAGCGTAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_379#0      CGTAATTAGTGTGACACANTCCTTTTAAAACAGGCAATTTATCGAATAGGCAAGAGTTTT 60
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      TAATTTCATAATTACTTCAGCGTTACGATATTAGTCGGCACGATTCAGCGACCCATTAAG 120
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      AGTGGCTTTCAATGTGTTCTTGCGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTG 180
consensus_379#1      -------CAGAATCGGNCACGAGGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTG 53
                               ***  *       *************************************

consensus_379#0      TTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTT 240
consensus_379#1      TTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTT 113
                     ************************************************************

consensus_379#0      GCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAG 300
consensus_379#1      GCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAG 173
                     ************************************************************

consensus_379#0      TGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAA 360
consensus_379#1      TGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAA 233
                     ************************************************************

consensus_379#0      TGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGC 420
consensus_379#1      TGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGC 293
                     ************************************************************

consensus_379#0      CTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACC 480
consensus_379#1      CTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACC 353
                     ************************************************************

consensus_379#0      AACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACNAACATTTA 540
consensus_379#1      AACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACAAACATTTA 413
                     *************************************************** ********

consensus_379#0      AAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTG 600
consensus_379#1      AAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTG 473
                     ************************************************************

consensus_379#0      ATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGNCTATGATAACTCGCAAAAAAG 660
consensus_379#1      ATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGTCTATGATAACTCGCAAAAAAG 533
                     ************************************** *********************

consensus_379#0      ATATTTAAAACATAATCATCTTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTAC 720
consensus_379#1      ATATTTAAAACATAATCATCTTTT-GATACTGCAAATAACACTCTTGCTTCTACTACTAC 592
                     ************************ ***********************************

consensus_379#0      TACCNCCNCCTATTACTACTACTATTTACTACTACTACCACTACTATTTCATACTTGAAT 780
consensus_379#1      TACCACCAC-TATTACTACTACTATTTACTACTACTACCACTACTATT-CATACTTGAAT 650
                     **** ** * ************************************** ***********

consensus_379#0      TAACTACTNC-------------------------------------------------- 790
consensus_379#1      TAACTACTTCCCTCCCTGTTCTACTAGGCTAACGATTATGATGATGCTAAGAGCGTAAGT 710
                     ******** *