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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[CCGCCCACGCGTCCGCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGATTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCCACCAATGGAACCGCCCCGGCCACCGATGCTGTACGACCGCAACCTGTCCTACGAGGCTTCACCGAACGTCAGTGGCGGTTCGATCAAGTTTTCTCCTGCGCTGCGGAAGCTAGGCCCGCCGGGCGATACGATACTGGATGATAAATTTATGGAAAACTATGCACATAAGTTCAATCTTTCCTACAGCGAA]
[+] EMBL BM612714 [CCGCCCACGCGTCCGCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGATTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCCACCAATGGAACCGCCCCGGCCACCGATGCTGTACGACCGCAACCTGTCCTACGAGGCTTCACCGAACGTCAGTGGCGGTTCGATCAAGTTTTCTCCTGCGCTGCGGAAGCTAGGCCCGCCGGGCGATACGATACTGGATGATAAATTTATGGAAAACTATGCACATAAGTTCAATCTTTCCTACAGCGAA]
consensusID : consensus_3802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[AATTGCCCCGAGGCNTTATTCGTCTCCGATCTCGATCTTTTGCGCGGTACGCGTACGCATTTTAGCGAAATGTCTAGCAATCCTGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGCTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCAACGATGGAACCGGCCCGGCACCGATGCTGTACGACCGAACTGTCTACGAAAGCGTCACCGAACGTCAGTGGCGGTTCGATCCA]
[+] EMBL AL694200 [AATTGCCCCGAGGCNTTATTCGTCTCCGATCTCGATCTTTTGCGCGGTACGCGTACGCATTTTAGCGAAATGTCTAGCAATCCTGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGCTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCAACGATGGAACCGGCCCGGCACCGATGCTGTACGACCGAACTGTCTACGAAAGCGTCACCGAACGTCAGTGGCGGTTCGATCCA]
consensusID : consensus_3802#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence
[CCGGCATTTTCTCCGTGTTCCGTCTCCGATCTCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTTGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTATACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCGCCGCTGGGGTGTTCAACAGGGGGCAGCCCACCGATGGAACCGGC]
[+] EMBL BM628317 [CCGGCATTTTCTCCGTGTTCCGTCTCCGATCTCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTTGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTATACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCGCCGCTGGGGTGTTCAACAGGGGGCAGCCCACCGATGGAACCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3802#1 ----AATTGCCCCGAGGCNTTATTCGTCTCCGATCTCGATCTTTTGCGCGGTACGCGTAC 56
consensus_3802#2 CCGGCATTTTCTC----CGTGTTCCGTCTCCGATCTCGATCTTTTGCGCGGTACGCATAC 56
consensus_3802#0 ---------------------CCGCCCACGCGTCCGCGATCTTTTGCGCGGTACGCATAC 39
* ** * ******************** ***
consensus_3802#1 GCATTTTAGCGAAATGTCTAGCAATCCTGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAA 116
consensus_3802#2 GCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAA 116
consensus_3802#0 GCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAA 99
*************************** ********************************
consensus_3802#1 TCGGACGCTTGAGCTGAACCTAAATAGGAAGCGCTCGAAGGAATGCTTGCGATGGGGCAC 176
consensus_3802#2 TCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCAC 176
consensus_3802#0 TCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCAC 159
********************************* **************************
consensus_3802#1 GGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTC 236
consensus_3802#2 GGTGCACATACTGCTACTGTCCGTGGTGCTGTTTGACATTTCCAACAAGTGTTCGTACTC 236
consensus_3802#0 GGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTC 219
********************************* **************************
consensus_3802#1 GTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGC-ATGCTGTCCTGCAGCATGGT 295
consensus_3802#2 GTTTTCGAACCTATACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGT 296
consensus_3802#0 GTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGT 279
************ ************************** ********************
consensus_3802#1 GTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGA 355
consensus_3802#2 GTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGA 356
consensus_3802#0 GTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGA 339
************************************************************
consensus_3802#1 ACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCT 415
consensus_3802#2 ACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCT 416
consensus_3802#0 ACAGCAACGGCGAATACTCAGATTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCT 399
********************* **************************************
consensus_3802#1 GCAGGCCAAGCAATCGGC-AGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTT 474
consensus_3802#2 GCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTT 476
consensus_3802#0 GCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTT 459
****************** *****************************************
consensus_3802#1 GCGGTCCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCC-CCGCTGGG-TGTTCAGCAG 532
consensus_3802#2 GCGGTCC-TTTCACGAATCGAGCTTTTCGATTGCCTCGCCGCCGCTGGGGTGTTCAACAG 535
consensus_3802#0 GCGGTCC-TTTCACGAATCGAGCTTTTCGATTGCCTCGCC-CCGCTGGG-TGTTCAGCAG 516
******* ******************************** ******** ****** ***
consensus_3802#1 GGG-CAGCCAAC-GATGGAACCGGCCCGGC-ACCGATGCTGTACGACCGAA--CTGTCTA 587
consensus_3802#2 GGGGCAGCCCACCGATGGAACCGGC----------------------------------- 560
consensus_3802#0 GGG-CAGCCCACCAATGGAACCGCCCCGGCCACCGATGCTGTACGACCGCAACCTGTCCT 575
*** ***** ** ********* *
consensus_3802#1 CGAAAGCGTCACCGAACGTCAGTGGCGGTTCGATCCA----------------------- 624
consensus_3802#2 ------------------------------------------------------------
consensus_3802#0 ACGAGGCTTCACCGAACGTCAGTGGCGGTTCGATCAAGTTTTCTCCTGCGCTGCGGAAGC 635
consensus_3802#1 ------------------------------------------------------------
consensus_3802#2 ------------------------------------------------------------
consensus_3802#0 TAGGCCCGCCGGGCGATACGATACTGGATGATAAATTTATGGAAAACTATGCACATAAGT 695
consensus_3802#1 --------------------
consensus_3802#2 --------------------
consensus_3802#0 TCAATCTTTCCTACAGCGAA 715
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||