cluster # 3803

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Anopheles gambiae
cluster # 3803 cluster # 3803 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3803#0 length = 732 sequences # 1

consensus_3803#1 length = 631 sequences # 1
consensus_3803#2 length = 616 sequences # 1

consensusID : consensus_3803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [CCCCGAGGTTAGTGAACATGAAAAAATGAAAANAATCAGTGAAATAGATAAAAAACGAACGTAAACACAACAGAAAATCACAACAAAATGCACAACGAATAGTAAGAAACCCCCATGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAAACAAAAGAGGTAAACATAATAACCTCCAATGAAGCCGGCACAAACGGAAAGTCCTCGATGTAAGCAACCACTAGGCCGCCACAAACTGTGAATCCTTGCGCGAGCCCAGGCTGAGTAGTGTTGTCCGAAAATTGGAAAATGAAACTTGACCCGCTGGGCTTGCGAACAACCCAGAGCCAAGGGGAAGGTGAACCCAACTGCCAACTGTCTATNATCTGTGCGTTAAAGTTGCCTGTAAGTAATTCTCTTCATGTTTCTCCAAAACCACTCACACCGCACTCCCCGGATTGGTTCTATCTTCCAACCACAGTACTGGAACAGCAGCTGTGCCAGAGAACAGTANTGAACTGAATGGCCGAGAGGAAAANTTTANNGCCACGCGTGTATTATGCTGGGCTGGGGCCGGGAAGCCGTNACACGTTGGGCTGTAACTTAGANCTTATCTCTCGTAAAGTCAATCCAAAGACCTACCCTCCCCCGGGCTGAAGATGGGNGAAANGGGACGACCTTTNATGCCAGCGCAGANACGGTGGCACGACCA]

[+] EMBL AL694569             [CCCCGAGGTTAGTGAACATGAAAAAATGAAAANAATCAGTGAAATAGATAAAAAACGAACGTAAACACAACAGAAAATCACAACAAAATGCACAACGAATAGTAAGAAACCCCCATGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAAACAAAAGAGGTAAACATAATAACCTCCAATGAAGCCGGCACAAACGGAAAGTCCTCGATGTAAGCAACCACTAGGCCGCCACAAACTGTGAATCCTTGCGCGAGCCCAGGCTGAGTAGTGTTGTCCGAAAATTGGAAAATGAAACTTGACCCGCTGGGCTTGCGAACAACCCAGAGCCAAGGGGAAGGTGAACCCAACTGCCAACTGTCTATNATCTGTGCGTTAAAGTTGCCTGTAAGTAATTCTCTTCATGTTTCTCCAAAACCACTCACACCGCACTCCCCGGATTGGTTCTATCTTCCAACCACAGTACTGGAACAGCAGCTGTGCCAGAGAACAGTANTGAACTGAATGGCCGAGAGGAAAANTTTANNGCCACGCGTGTATTATGCTGGGCTGGGGCCGGGAAGCCGTNACACGTTGGGCTGTAACTTAGANCTTATCTCTCGTAAAGTCAATCCAAAGACCTACCCTCCCCCGGGCTGAAGATGGGNGAAANGGGACGACCTTTNATGCCAGCGCAGANACGGTGGCACGACCA]




>consensus_3803#0
CCCCGAGGTTAGTGAACATGAAAAAATGAAAANAATCAGTGAAATAGATAAAAAACGAAC
GTAAACACAACAGAAAATCACAACAAAATGCACAACGAATAGTAAGAAACCCCCATGCAA
AGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGA
AGAAAAAAGAAACAAAAGAGGTAAACATAATAACCTCCAATGAAGCCGGCACAAACGGAA
AGTCCTCGATGTAAGCAACCACTAGGCCGCCACAAACTGTGAATCCTTGCGCGAGCCCAG
GCTGAGTAGTGTTGTCCGAAAATTGGAAAATGAAACTTGACCCGCTGGGCTTGCGAACAA
CCCAGAGCCAAGGGGAAGGTGAACCCAACTGCCAACTGTCTATNATCTGTGCGTTAAAGT
TGCCTGTAAGTAATTCTCTTCATGTTTCTCCAAAACCACTCACACCGCACTCCCCGGATT
GGTTCTATCTTCCAACCACAGTACTGGAACAGCAGCTGTGCCAGAGAACAGTANTGAACT
GAATGGCCGAGAGGAAAANTTTANNGCCACGCGTGTATTATGCTGGGCTGGGGCCGGGAA
GCCGTNACACGTTGGGCTGTAACTTAGANCTTATCTCTCGTAAAGTCAATCCAAAGACCT
ACCCTCCCCCGGGCTGAAGATGGGNGAAANGGGACGACCTTTNATGCCAGCGCAGANACG
GTGGCACGACCA

consensusID : consensus_3803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [TTGCCCGAGGTTAAAAAGAAAACGAAACAAAACANCAACAAAAACTTCTGCTAGAAATCGAACGAAAAAAAAACATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCACACCAACTTCAGTCCGTCATGGCAGTATTAACAAGTTAATTCAACAGCCATTTCATCAAAAGCCGGGCATCACACAGGTAGGAAGTTCAAAGCAGAAACAAGGACACAATCACCAGCAGCAAACACACACAAGCAATTAACCTAAAACGCCTATTATAATCGGACAACAGAGAACAAGAGAAGCCAAACAGCATATAAGCAAAGCAGCAGCAAAGCAGAGCAAACAAGCAAACCCAGTAGTGTGATAGTGCATGCAAAGTGAACATGAACCACACATGAACAAAAATCAGTGAAATAGAAAAAAACGAACGTAAACACAACAGAAAAGTCACAAGCAAAATGCACAACGAATAGTAAGAAACCCCCATGGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAACANACAAGAGGTAAACATAATAACCTCCA]

[+] EMBL AL694213             [TTGCCCGAGGTTAAAAAGAAAACGAAACAAAACANCAACAAAAACTTCTGCTAGAAATCGAACGAAAAAAAAACATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCACACCAACTTCAGTCCGTCATGGCAGTATTAACAAGTTAATTCAACAGCCATTTCATCAAAAGCCGGGCATCACACAGGTAGGAAGTTCAAAGCAGAAACAAGGACACAATCACCAGCAGCAAACACACACAAGCAATTAACCTAAAACGCCTATTATAATCGGACAACAGAGAACAAGAGAAGCCAAACAGCATATAAGCAAAGCAGCAGCAAAGCAGAGCAAACAAGCAAACCCAGTAGTGTGATAGTGCATGCAAAGTGAACATGAACCACACATGAACAAAAATCAGTGAAATAGAAAAAAACGAACGTAAACACAACAGAAAAGTCACAAGCAAAATGCACAACGAATAGTAAGAAACCCCCATGGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAGAACANACAAGAGGTAAACATAATAACCTCCA]




>consensus_3803#1
TTGCCCGAGGTTAAAAAGAAAACGAAACAAAACANCAACAAAAACTTCTGCTAGAAATCG
AACGAAAAAAAAACATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCT
TCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCACACCAACTTCAGTCCGTCATGG
CAGTATTAACAAGTTAATTCAACAGCCATTTCATCAAAAGCCGGGCATCACACAGGTAGG
AAGTTCAAAGCAGAAACAAGGACACAATCACCAGCAGCAAACACACACAAGCAATTAACC
TAAAACGCCTATTATAATCGGACAACAGAGAACAAGAGAAGCCAAACAGCATATAAGCAA
AGCAGCAGCAAAGCAGAGCAAACAAGCAAACCCAGTAGTGTGATAGTGCATGCAAAGTGA
ACATGAACCACACATGAACAAAAATCAGTGAAATAGAAAAAAACGAACGTAAACACAACA
GAAAAGTCACAAGCAAAATGCACAACGAATAGTAAGAAACCCCCATGGCAAAGCTAACAA
GCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCGTTAGAAGAAAAAAG
AACANACAAGAGGTAAACATAATAACCTCCA

consensusID : consensus_3803#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [CCGGGTGTATAAAAGTGAAAGACTCAGACTAGAGTGCGCAAAACCGAAACGCATTACGAAGCATTAACACGTACTAATCTAAGCATGGCTGCGATTAAACTAAACAACAATAACACAAAAAAGTAATGTAAAAACGTAAAAACCCTGTTACTCAAAACGCAAAACCACCGTGAATGGTGCTGTATAGTTAAAAGAAGAACAAACAACCGCTAAATTGAAGAAAATTAAAATAAAAAAAAACAAACACTGCTACACAAACACGCAAAAAGAAAACGAAACAAGACAACAACAAAAACTTCTGCTAGAAATCGAACAAAAAAAAAAATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCAACAACTTAGTCGTATGGAGTGTAACAAGTAATTAAAGCATTTATAAAGCGGGATCACACAGTAGAAGTTAAAGCAGAAAAAGAAAATACAGAAAAAAAGAATAACTAAAACGCTATTATAATCAGAAAAGAGACAAGAGAAACGAACAGACATAAGAAAGAGAAAGAGAGAGAAAAAGAAACCCAGTAGTGTGATAGTGATAAAAGTG]

[+] EMBL BM575205             [CCGGGTGTATAAAAGTGAAAGACTCAGACTAGAGTGCGCAAAACCGAAACGCATTACGAAGCATTAACACGTACTAATCTAAGCATGGCTGCGATTAAACTAAACAACAATAACACAAAAAAGTAATGTAAAAACGTAAAAACCCTGTTACTCAAAACGCAAAACCACCGTGAATGGTGCTGTATAGTTAAAAGAAGAACAAACAACCGCTAAATTGAAGAAAATTAAAATAAAAAAAAACAAACACTGCTACACAAACACGCAAAAAGAAAACGAAACAAGACAACAACAAAAACTTCTGCTAGAAATCGAACAAAAAAAAAAATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCAACAACTTAGTCGTATGGAGTGTAACAAGTAATTAAAGCATTTATAAAGCGGGATCACACAGTAGAAGTTAAAGCAGAAAAAGAAAATACAGAAAAAAAGAATAACTAAAACGCTATTATAATCAGAAAAGAGACAAGAGAAACGAACAGACATAAGAAAGAGAAAGAGAGAGAAAAAGAAACCCAGTAGTGTGATAGTGATAAAAGTG]




>consensus_3803#2
CCGGGTGTATAAAAGTGAAAGACTCAGACTAGAGTGCGCAAAACCGAAACGCATTACGAA
GCATTAACACGTACTAATCTAAGCATGGCTGCGATTAAACTAAACAACAATAACACAAAA
AAGTAATGTAAAAACGTAAAAACCCTGTTACTCAAAACGCAAAACCACCGTGAATGGTGC
TGTATAGTTAAAAGAAGAACAAACAACCGCTAAATTGAAGAAAATTAAAATAAAAAAAAA
CAAACACTGCTACACAAACACGCAAAAAGAAAACGAAACAAGACAACAACAAAAACTTCT
GCTAGAAATCGAACAAAAAAAAAAATACATCAACATAATACGTGGCCTTAGCTTTCCTCT
GATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTGCATGTGTGCAACAACTTAGTCG
TATGGAGTGTAACAAGTAATTAAAGCATTTATAAAGCGGGATCACACAGTAGAAGTTAAA
GCAGAAAAAGAAAATACAGAAAAAAAGAATAACTAAAACGCTATTATAATCAGAAAAGAG
ACAAGAGAAACGAACAGACATAAGAAAGAGAAAGAGAGAGAAAAAGAAACCCAGTAGTGT
GATAGTGATAAAAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3803#1      TTGCCCGAGGTTAAAAAGAAAACGAAACAAAACANCAACAAAAACTTCTGCTAGAAATCG 60
consensus_3803#2      ---CCGGGTGTATAAAAGTGAAAGACTCAGACTAG-AGTGCGCAAAACCGAAACGCATT- 55
consensus_3803#0      --CCCCGAGGTTAGTGAACATGAAAAAATGAAAAN-AATCAGTGAAATAGATAAAAAACG 57
                         ** *  **     *       *     *  *  *            *  *   *   

consensus_3803#1      AACGAAAAAAAAACATACATCAACATAATACGTGGCCTTAGCTTTCCTCTGATACTTCCT 120
consensus_3803#2      -ACGAAGCATTAACACGTACTAATCTAA-GCATGGCTGCGATTAAACTAAACAACAATAA 113
consensus_3803#0      AACGTAAACACAACAGAAAATCACAACAAAATGCACAACGAATAG--TAAGAAACCCCCA 115
                       *** *     ****   *   *    *       *      *    *     **     

consensus_3803#1      TCTAATACTACAAAGTAA-GCAAAGCGTGCATGTGTGCACACCAACT--TCAGTCCGTCA 177
consensus_3803#2      CACAAAAAAGTAATGTAA-AAACGTAAAAACCCTGTTACTCAAAACG--CAAAACCACCG 170
consensus_3803#0      TGCAAAGCTAACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGCTCCG 175
                         **       * * *    *                     **          *  * 

consensus_3803#1      TGG-CAGTATTAACAAGTTAATTCAACAGCCATTTCATCAAAAGCCGGGCATCACACAGG 236
consensus_3803#2      TGAATGGTGCTGTATAGTTAAAAGAAGAACAAACAACCGCTAAATTGAAGAAAATTAAAA 230
consensus_3803#0      TTAGAAGAAAAAAGAAACAAAAGAGGTAAACATAATAACCTCCAATGAAGCCGGCACAAA 235
                      *     *        *   **      *   *              *          *  

consensus_3803#1      TAGGAAGTTCAAAGCAGAAACAAGGACACAATCAC---CAGCAGCAAACACACACAAGCA 293
consensus_3803#2      TAAAAA----AAAACAAACACTGCTACACAAACACG--CAAAAAGAAAACGAAACAAGAC 284
consensus_3803#0      CGGAAAGTCCTCGATGTAAGCAACCACTAGGCCGCCACAAACTGTGAATCCTTGCGCGAG 295
                          **           *  *    **     * *    *      **      *  *  

consensus_3803#1      ATTAA-CCTAAAACGCCTATTATAATCGGACAACAGAGAACAAGAGAAGCCAA-ACAGCA 351
consensus_3803#2      AACAA-CA-AAAACTTCTGCTAGAAATCGA--ACAAAAAAAAAAATACATCAACATAATA 340
consensus_3803#0      CCCAGGCTGAGTAGTGTTGTCCGAAAATTGGAAAATGAAACTTGACCCGCTGGGCTTGCG 355
                         *  *  *  *    *     **       * *   **    *               

consensus_3803#1      TATAAGCAAAG--CAGCAGCAAAGCAGAGCAAACAAGCAA-ACCCAGTAGTGTGATAGTG 408
consensus_3803#2      CGTGGCCTTAG--CTTTCCTCTGATACTTCCTTCTAATACTACAAAGTAAGCAAAGCGTG 398
consensus_3803#0      AACAACCCAGAGCCAAGGGGAAGGTGAACCCAACTGCCAACTGTCTATNATCTGTGCGTT 415
                            *      *               *   *    *        *         ** 

consensus_3803#1      CA---TGCAAAGTGAACATGAACCACACATGA-ACAAAAATCAGTGAAATAGAAAAAAAC 464
consensus_3803#2      CA---TGTGTGCAACAACTTAGTCGTATGGAGTGTAACAAGTAATTAAAGCATTTATAA- 454
consensus_3803#0      AAAGTTGCCTGTAAGTAATTCTCTTCATGTTTCTCCAAAACCACTCACACCGCACTCCCC 475
                       *   **           *       *         * **  * * * *           

consensus_3803#1      GAACGTAAACACAACAGAAAAGTCACAAGCAAAATGCACAACGAATAGTAAGAAACCCCC 524
consensus_3803#2      -AGCGGGATCACACAGTAGAAGTTA-AAGCAGAAAA-AGAAAATACAGAAAAAAAGAATA 511
consensus_3803#0      GGATTGGTTCTATCTTCCAACCACAGTACTGGAACA--GCAGCTGTGCCAGAGAACAGTA 533
                               *         *    *  *    **      *        *   **     

consensus_3803#1      ATGGCAAAGCTA--ACAAGCAGCAAATGTGAAAGAACGAGTAATTAAAATGTACAGAAGC 582
consensus_3803#2      ACTAAAACGCTATTATAATCAGAAAAGAGACAAGAGAAACGAACAGACATAAGAAAGAGA 571
consensus_3803#0      NTGAACTGAATGGCCGAGAGGAAAANTTTANNGCCACGCGTGTATTATGCTGGGCTGGGG 593
                                *     *      **                     *           * 

consensus_3803#1      TCCGTTAGAAGAAAAAAGAACANACAAGAGGTAAACATAATAACCTCCA----------- 631
consensus_3803#2      AAGAGAGAGAAAAAGAAACCCAGTAGTGTGATAGTGATAAAAGTG--------------- 616
consensus_3803#0      CCGGGAAGCCGTNACACGTTGGGCTGTAACTTAGANCTTATCTCTCGTAAAGTCAATCCA 653
                                   * *               **    * *                    

consensus_3803#1      ------------------------------------------------------------
consensus_3803#2      ------------------------------------------------------------
consensus_3803#0      AAGACCTACCCTCCCCCGGGCTGAAGATGGGNGAAANGGGACGACCTTTNATGCCAGCGC 713
                                                                                  

consensus_3803#1      -------------------
consensus_3803#2      -------------------
consensus_3803#0      AGANACGGTGGCACGACCA 732