cluster # 3819

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Anopheles gambiae
cluster # 3819 cluster # 3819 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3819#0 length = 493 sequences # 1

consensus_3819#1 length = 434 sequences # 1
consensus_3819#2 length = 373 sequences # 1

consensusID : consensus_3819#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [ATTTCAGCATTAGAGCGTTAGAGTGTGGACAGGGCGAACCGCGGAAGAGGAAGGTTTTGCAGATGAAAGCAACGCGTGAAGCGGCCACAGGGCATCAGAGAGAGAGAGAGAGAGTGGTGTGGGGTGTGTGGGGGGACGGAACTCTTCCCACAAGTCCACAAGGAATATTGCTATTTTGTGATTTGGAAGTTAACTTAAAAGAAAAGATTGTTTTAGCTCTCATGTGTTTTTTTAACCTTCATTATATACATTTTCTCTCTTCCAATGCGCTTCCTTCAGCTTTTTTTTTAATTTGTTGGGGGTCGAACAGCACAACGGCTTTAACATGTCAATTTTTTCCGCTACTTTTAACTGATCACATTCATCTTATGCGGCTAAGATCTGTTTTTTTTTTTTTTGTTTAATGGCTCGCCTAAAGGGAGTTGAAAAGTGGAAAAAACGAAAAAGAAATACCCAATTGTGATACGATATGAAGTTGTGCGCTGAATAGGAA]

[+] EMBL BM656708             [ATTTCAGCATTAGAGCGTTAGAGTGTGGACAGGGCGAACCGCGGAAGAGGAAGGTTTTGCAGATGAAAGCAACGCGTGAAGCGGCCACAGGGCATCAGAGAGAGAGAGAGAGAGTGGTGTGGGGTGTGTGGGGGGACGGAACTCTTCCCACAAGTCCACAAGGAATATTGCTATTTTGTGATTTGGAAGTTAACTTAAAAGAAAAGATTGTTTTAGCTCTCATGTGTTTTTTTAACCTTCATTATATACATTTTCTCTCTTCCAATGCGCTTCCTTCAGCTTTTTTTTTAATTTGTTGGGGGTCGAACAGCACAACGGCTTTAACATGTCAATTTTTTCCGCTACTTTTAACTGATCACATTCATCTTATGCGGCTAAGATCTGTTTTTTTTTTTTTTGTTTAATGGCTCGCCTAAAGGGAGTTGAAAAGTGGAAAAAACGAAAAAGAAATACCCAATTGTGATACGATATGAAGTTGTGCGCTGAATAGGAA]




>consensus_3819#0
ATTTCAGCATTAGAGCGTTAGAGTGTGGACAGGGCGAACCGCGGAAGAGGAAGGTTTTGC
AGATGAAAGCAACGCGTGAAGCGGCCACAGGGCATCAGAGAGAGAGAGAGAGAGTGGTGT
GGGGTGTGTGGGGGGACGGAACTCTTCCCACAAGTCCACAAGGAATATTGCTATTTTGTG
ATTTGGAAGTTAACTTAAAAGAAAAGATTGTTTTAGCTCTCATGTGTTTTTTTAACCTTC
ATTATATACATTTTCTCTCTTCCAATGCGCTTCCTTCAGCTTTTTTTTTAATTTGTTGGG
GGTCGAACAGCACAACGGCTTTAACATGTCAATTTTTTCCGCTACTTTTAACTGATCACA
TTCATCTTATGCGGCTAAGATCTGTTTTTTTTTTTTTTGTTTAATGGCTCGCCTAAAGGG
AGTTGAAAAGTGGAAAAAACGAAAAAGAAATACCCAATTGTGATACGATATGAAGTTGTG
CGCTGAATAGGAA

consensusID : consensus_3819#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [GCATCGGAATTGCCGGTAGCGAGNTGATTAAGGTCCGTTTTTACCTACTNTTGTGACGATTTGTACGTACGGTTAAAAGAGAAATAAGCAACCCTCCCCAATCCCTGGATTATCCTATATACTGCATGGTACATACTTACAGATATATTTTCTTGTTAGCGATTAGTTTCATTTTAACGTCATTTTAACAAAAAGCGTATTTCAGCATTAAAGCGGTTAGAGCGTGGACAGAGCGAACCGGAAGAGGAAGGTTTTGCAGATGAAAGCAACGCGTGAATCGGCCACAGGGGCATCAGAGAGGAGAGAGAGAGTGGTGTGGGGTGTGTGGGGGACGGAACATCTTCCCTCAAGGACCACAAGGGAATATTGTGTATTTTGTGATTTTGGAAGTTAACTTAAACGAAAAGATTGTGTTAGCTCTCATGTGTTNGTTT]

[+] EMBL BX469724             [GCATCGGAATTGCCGGTAGCGAGNTGATTAAGGTCCGTTTTTACCTACTNTTGTGACGATTTGTACGTACGGTTAAAAGAGAAATAAGCAACCCTCCCCAATCCCTGGATTATCCTATATACTGCATGGTACATACTTACAGATATATTTTCTTGTTAGCGATTAGTTTCATTTTAACGTCATTTTAACAAAAAGCGTATTTCAGCATTAAAGCGGTTAGAGCGTGGACAGAGCGAACCGGAAGAGGAAGGTTTTGCAGATGAAAGCAACGCGTGAATCGGCCACAGGGGCATCAGAGAGGAGAGAGAGAGTGGTGTGGGGTGTGTGGGGGACGGAACATCTTCCCTCAAGGACCACAAGGGAATATTGTGTATTTTGTGATTTTGGAAGTTAACTTAAACGAAAAGATTGTGTTAGCTCTCATGTGTTNGTTT]




>consensus_3819#1
GCATCGGAATTGCCGGTAGCGAGNTGATTAAGGTCCGTTTTTACCTACTNTTGTGACGAT
TTGTACGTACGGTTAAAAGAGAAATAAGCAACCCTCCCCAATCCCTGGATTATCCTATAT
ACTGCATGGTACATACTTACAGATATATTTTCTTGTTAGCGATTAGTTTCATTTTAACGT
CATTTTAACAAAAAGCGTATTTCAGCATTAAAGCGGTTAGAGCGTGGACAGAGCGAACCG
GAAGAGGAAGGTTTTGCAGATGAAAGCAACGCGTGAATCGGCCACAGGGGCATCAGAGAG
GAGAGAGAGAGTGGTGTGGGGTGTGTGGGGGACGGAACATCTTCCCTCAAGGACCACAAG
GGAATATTGTGTATTTTGTGATTTTGGAAGTTAACTTAAACGAAAAGATTGTGTTAGCTC
TCATGTGTTNGTTT

consensusID : consensus_3819#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [CCGAAAACAAAGAGACTAACCTCGGCAACAATGCAAAAGGCAACCCCCTTACTCTACAGCGGATGGGGAGGTGATGATAGAAGGATGATACAGAGCAATCAGTCTTGCAACAACAAAACTTACACAAAACACAAACACACTAAAGGAAGAGAAACGTAAGCAATAATGATTGAACGGCGCCTTTGCTCCGTTCGGGCGTCGTGCGAGATGTATAGCATTGTAAGGTAATTAAGCTATATGTTAAGGTCCGTTTTTACCTACTTTGTGACGATTTGTACGTACGGTTAAAAGAGAAATAAGCAACCCTCCCCGATCCCTGGATTATCCTATACTGCATGGTACATACTTACAGATATATTTTTTTTTGTTAGCG]

[+] EMBL BM604062             [CCGAAAACAAAGAGACTAACCTCGGCAACAATGCAAAAGGCAACCCCCTTACTCTACAGCGGATGGGGAGGTGATGATAGAAGGATGATACAGAGCAATCAGTCTTGCAACAACAAAACTTACACAAAACACAAACACACTAAAGGAAGAGAAACGTAAGCAATAATGATTGAACGGCGCCTTTGCTCCGTTCGGGCGTCGTGCGAGATGTATAGCATTGTAAGGTAATTAAGCTATATGTTAAGGTCCGTTTTTACCTACTTTGTGACGATTTGTACGTACGGTTAAAAGAGAAATAAGCAACCCTCCCCGATCCCTGGATTATCCTATACTGCATGGTACATACTTACAGATATATTTTTTTTTGTTAGCG]




>consensus_3819#2
CCGAAAACAAAGAGACTAACCTCGGCAACAATGCAAAAGGCAACCCCCTTACTCTACAGC
GGATGGGGAGGTGATGATAGAAGGATGATACAGAGCAATCAGTCTTGCAACAACAAAACT
TACACAAAACACAAACACACTAAAGGAAGAGAAACGTAAGCAATAATGATTGAACGGCGC
CTTTGCTCCGTTCGGGCGTCGTGCGAGATGTATAGCATTGTAAGGTAATTAAGCTATATG
TTAAGGTCCGTTTTTACCTACTTTGTGACGATTTGTACGTACGGTTAAAAGAGAAATAAG
CAACCCTCCCCGATCCCTGGATTATCCTATACTGCATGGTACATACTTACAGATATATTT
TTTTTTGTTAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3819#0      ------------------------------------------------------------
consensus_3819#1      GCATCGGAATTGCCGGTAGCGAGNTGATTAAGGTCCGTTTTTACCTACTNTTGTGACGAT 60
consensus_3819#2      ------------------------------------------------------------
                                                                                  

consensus_3819#0      ------------------------------------------------------------
consensus_3819#1      TTGTACGTACGGTTAAAAGAGAAATAAGCAACCCTCCCCAATCCCTGGATTATCCTATAT 120
consensus_3819#2      ------------------------------------------------------------
                                                                                  

consensus_3819#0      ------------------------------------------------------------
consensus_3819#1      ACTGCATGGTACATACTTACAGATATATTTTCTTGTTAGCGATTAGTTTCATTTTAACGT 180
consensus_3819#2      ------------------------------------------------------------
                                                                                  

consensus_3819#0      ------------------ATTTCAGCATTAGAGCG-TTAGAGTGTGGACAGGGCGAACCG 41
consensus_3819#1      CATTTTAACAAAAAGCGTATTTCAGCATTAAAGCGGTTAGAGCGTGGACAGAGCGAACCG 240
consensus_3819#2      ------------------------------------------------------------
                                                                                  

consensus_3819#0      CGGAAGAGGAAGGTTTTGCAGATGAAAGCAACGCGTGAAGCGGCCACAGGG-CATCAGAG 100
consensus_3819#1      --GAAGAGGAAGGTTTTGCAGATGAAAGCAACGCGTGAATCGGCCACAGGGGCATCAGAG 298
consensus_3819#2      CCGAAAACAAAGAGACTAACCTCGGCAACAATGCAAAAGGCAACCCCCTTACTCTACAGC 60
                        *** *  ***    *      *  * *** **   *  *  ** *       *     

consensus_3819#0      AGAGAGAGAGAGAGTGGT-GTGGGGTG-TGTGGGGGGACGGAAC-TCTTCCCACAAGT-C 156
consensus_3819#1      AG-GAGAGAGAGAGTGGT-GTGGGGTG-TGTGGGGG-ACGGAACATCTTCCCTCAAGGAC 354
consensus_3819#2      GGATGGGGAGGTGATGATAGAAGGATGATACAGAGCAATCAGTCTTGCAACAACAAAACT 120
                       *   * ***    ** * *  ** ** *   * *  *     * *    *  ***    

consensus_3819#0      CACAAGG-AATATTGC-TATTTTGTGATTT-GGAAGTTAACTTAAAAGAAAAGATTGTTT 213
consensus_3819#1      CACAAGGGAATATTGTGTATTTTGTGATTTTGGAAGTTAACTTAAACGAAAAGATTGTGT 414
consensus_3819#2      TACACAAAACACAAACACACTAAAGGAAGAGAAACGTAAGCAATAATGATTGAACGGCGC 180
                       ***    *         * *    **      * ** * *   ** **    *  *   

consensus_3819#0      TAGCTCTCATGTGTTTTTTTAACCTTCATTATATACATTTTCTCTCTTCCAATGCGCTTC 273
consensus_3819#1      TAGCTCTCATGTGTTNGTTT---------------------------------------- 434
consensus_3819#2      ---CTTTGCTCCGTTCGGGCGTCGTGCGAGATGTATAGCATTGTAAGGTAATTAAGCTAT 237
                         ** *  *  ***                                             

consensus_3819#0      CT-TCAGCTTTTTTTTTAATTTGTTGGGGGTCGAACAGCACAACGGCTTTAACATGTCAA 332
consensus_3819#1      ------------------------------------------------------------
consensus_3819#2      ATGTTAAGGTCCGTTTTTACCTACTTTGTGACGATTTGTACGTACGGTTAAAAGAGAAAT 297
                                                                                  

consensus_3819#0      TTTTTTCCGCTACTTTTAACTGATCACATTCATCTTATGCGGCTAAGATCTGTTTTTTTT 392
consensus_3819#1      ------------------------------------------------------------
consensus_3819#2      AAGCAACCCTCCCCGATCCCTGGATTATCCTATACTGCATGGTACATACTTACAGATATA 357
                                                                                  

consensus_3819#0      TTTTTTGTTTAATGGCTCGCCTAAAGGGAGTTGAAAAGTGGAAAAAACGAAAAAGAAATA 452
consensus_3819#1      ------------------------------------------------------------
consensus_3819#2      TTTTTT-TTTGTTAGCG------------------------------------------- 373
                                                                                  

consensus_3819#0      CCCAATTGTGATACGATATGAAGTTGTGCGCTGAATAGGAA 493
consensus_3819#1      -----------------------------------------
consensus_3819#2      -----------------------------------------