cluster # 3848

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Anopheles gambiae
cluster # 3848 cluster # 3848 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3848#0 length = 684 sequences # 1

consensus_3848#1 length = 590 sequences # 1
consensus_3848#2 length = 412 sequences # 1

consensusID : consensus_3848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CACTAGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGGGGGCGGCGGCGGCGGCGGCGGCAATGGGATCGGCGGTGTGGCGGGTGGGCCGGGCGGACCGGGCAGCGGCGTCCCGCTCGGCACGATGCTGGGCCACCATCACAACAATCCGCACGCGCTCGGCCGGAGCTGCAACGAGGACGCCCGGGCCGGCAACGATGGCTGCGGCCAGTTCGATCCGACCGGCGAGCATCTGCGGGCGGCCATGCGCGAACACCAGGCACAGCAGCAGCAGCAGCAGCAGTCGAACGACGATTGCCACCCGTTCGCCCACAGTCCCGTGCCGCGCAACGGGCTCGACCTTACCGATGAGTTCCTAAAGAGTGAGAACGTGCTGAAGGGATGAGAGTAGACGGCCCGCTACCACACGCCAACCGCCGGTAGTTGGGGTGCGGAGTAAAGCGAGCCGAGAGTGGGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTG]

[+] EMBL BX616548             [CACTAGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGGGGGCGGCGGCGGCGGCGGCGGCAATGGGATCGGCGGTGTGGCGGGTGGGCCGGGCGGACCGGGCAGCGGCGTCCCGCTCGGCACGATGCTGGGCCACCATCACAACAATCCGCACGCGCTCGGCCGGAGCTGCAACGAGGACGCCCGGGCCGGCAACGATGGCTGCGGCCAGTTCGATCCGACCGGCGAGCATCTGCGGGCGGCCATGCGCGAACACCAGGCACAGCAGCAGCAGCAGCAGCAGTCGAACGACGATTGCCACCCGTTCGCCCACAGTCCCGTGCCGCGCAACGGGCTCGACCTTACCGATGAGTTCCTAAAGAGTGAGAACGTGCTGAAGGGATGAGAGTAGACGGCCCGCTACCACACGCCAACCGCCGGTAGTTGGGGTGCGGAGTAAAGCGAGCCGAGAGTGGGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTG]




>consensus_3848#0
CACTAGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACC
ACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCT
CGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGA
ACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGGGGGCGGCGGCGGCGGCGGCGGCAATG
GGATCGGCGGTGTGGCGGGTGGGCCGGGCGGACCGGGCAGCGGCGTCCCGCTCGGCACGA
TGCTGGGCCACCATCACAACAATCCGCACGCGCTCGGCCGGAGCTGCAACGAGGACGCCC
GGGCCGGCAACGATGGCTGCGGCCAGTTCGATCCGACCGGCGAGCATCTGCGGGCGGCCA
TGCGCGAACACCAGGCACAGCAGCAGCAGCAGCAGCAGTCGAACGACGATTGCCACCCGT
TCGCCCACAGTCCCGTGCCGCGCAACGGGCTCGACCTTACCGATGAGTTCCTAAAGAGTG
AGAACGTGCTGAAGGGATGAGAGTAGACGGCCCGCTACCACACGCCAACCGCCGGTAGTT
GGGGTGCGGAGTAAAGCGAGCCGAGAGTGGGAGTGGGCGCTGGGGAAGATTGCGGGGTCA
GTGATTGCCTATTTTTGTTTGTTG

consensusID : consensus_3848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [ATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTGGAAGAAGTTGAAGCAAAAGTTACCCCTTCATTTGGTGCATTTAGTCGCGATGGGGGACCGAAGGAGCAGCAGTCTTCACGTGTGGGAAAGGGGGAAGAAGGGAAAAGGGAGCCTCATTTAACAAACAAGTAGTAGCAAAACGATTGTTCGTCCTGTTCACCTTTC]

[+] EMBL BX628088             [ATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTGGAAGAAGTTGAAGCAAAAGTTACCCCTTCATTTGGTGCATTTAGTCGCGATGGGGGACCGAAGGAGCAGCAGTCTTCACGTGTGGGAAAGGGGGAAGAAGGGAAAAGGGAGCCTCATTTAACAAACAAGTAGTAGCAAAACGATTGTTCGTCCTGTTCACCTTTC]




>consensus_3848#1
ATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGG
ACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGA
CCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGCTAACCGGCAAAAAT
ATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGA
CGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGC
GGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCG
GAGGGGGCGGTGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTT
TGTTGGAAGAAGTTGAAGCAAAAGTTACCCCTTCATTTGGTGCATTTAGTCGCGATGGGG
GACCGAAGGAGCAGCAGTCTTCACGTGTGGGAAAGGGGGAAGAAGGGAAAAGGGAGCCTC
ATTTAACAAACAAGTAGTAGCAAAACGATTGTTCGTCCTGTTCACCTTTC

consensusID : consensus_3848#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [GACCCACGCGTCCGGGCTGCCCAATCCGCACGGGCTGCCGTTTGGCGGCACCAACGGAGGGCTCGGTGGATCGAACGGCAGCGGCCCGAACGGGGTGACGGGGCCCGGCGGCATCTGTGGTGGTGGTGGCGGCGGCGGTGGCGGCGTCGGGGGCAGTGCGATGGATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGGCGAGCTGCACGGTAACGCGAACCTCGGTCCGTTGAAGAAGAAAAGTAATATGCTTAGTTTTAACGACTCCAAATACTCACTA]

[+] EMBL BM603005             [GACCCACGCGTCCGGGCTGCCCAATCCGCACGGGCTGCCGTTTGGCGGCACCAACGGAGGGCTCGGTGGATCGAACGGCAGCGGCCCGAACGGGGTGACGGGGCCCGGCGGCATCTGTGGTGGTGGTGGCGGCGGCGGTGGCGGCGTCGGGGGCAGTGCGATGGATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGGCGAGCTGCACGGTAACGCGAACCTCGGTCCGTTGAAGAAGAAAAGTAATATGCTTAGTTTTAACGACTCCAAATACTCACTA]




>consensus_3848#2
GACCCACGCGTCCGGGCTGCCCAATCCGCACGGGCTGCCGTTTGGCGGCACCAACGGAGG
GCTCGGTGGATCGAACGGCAGCGGCCCGAACGGGGTGACGGGGCCCGGCGGCATCTGTGG
TGGTGGTGGCGGCGGCGGTGGCGGCGTCGGGGGCAGTGCGATGGATAGCAACAATAGTCA
ATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGA
GGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGG
CCAGACGTTCAAGAGCAACACCATGCACGGCGAGCTGCACGGTAACGCGAACCTCGGTCC
GTTGAAGAAGAAAAGTAATATGCTTAGTTTTAACGACTCCAAATACTCACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3848#1      ------------------------------------------------------------
consensus_3848#2      ------------------------------------------------------------
consensus_3848#0      CACTAGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACC 60
                                                                                  

consensus_3848#1      ----------------------------ATAGCAACAATAGTCAATTTTCGCGCATGATG 32
consensus_3848#2      ------------------------------------------------------------
consensus_3848#0      ACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCT 120
                                                                                  

consensus_3848#1      ATGATCCAGGAGCCG-AAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGC 91
consensus_3848#2      ---------GACCCACGCGTCCGGGCTG--CCCAATCC---GCACGGGCTGCCGTTTGGC 46
consensus_3848#0      CGCAGGCGGAGGCCG-CCCTGCGGCTCG--CCGTGTCCCAGGCGCAGGCCGTCGTCTCGT 177
                                  **     * **    *  **   * *    *   ***   *     * 

consensus_3848#1      GG--TGCAGGCGGCGG---TGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTT- 145
consensus_3848#2      GG--CACCAACGGAGGGCTCGGTGGATCGAACGGCAGCGGCCCGAACGGGGT-GACG--- 100
consensus_3848#0      CGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGGGGGCGGCGGCGGCGGCGGCGGCA 237
                       *    *   *   **    ** * *     **   * *         *    * **   

consensus_3848#1      -CAAGAGCAACACCATGCACGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTC-G 203
consensus_3848#2      --GGGCCCGGCGGCATCTGTGGTGGT-GGTGGCGGCGGCG-GTGGCGGCGTCGGGGGCAG 156
consensus_3848#0      ATGGGATCGGCGGTGTGGCGGGTGG--GCCGGGCGGACCGGGCAGCGGCGTCCCGCTCGG 295
                          *  *  *    *    * *    *          *  *  *** *  *     * *

consensus_3848#1      TCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCA-GGC 262
consensus_3848#2      TGCGATGGATAGCAACAATAGTCAATT--TTCGCGCATGATGAT---GATCCAGGA-GCC 210
consensus_3848#0      CACGATG--CTGGGCCACCATCACAACAATCCGCACGCGCTCGGCCGGAGCTGCAACGAG 353
                            *    *   **              **     *        ** *    * *  

consensus_3848#1      GGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTG---CGGCTCGCCG-----TGTCC 314
consensus_3848#2      GAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACG---CCGTCGGCGG-----TGCAG 262
consensus_3848#0      GACGCCCGGGCCGGCAACGATGGCTGCGGCCAGTTCGATCCGACCGGCGAGCATCTGCGG 413
                      *  *      * *     *  *      *       *   *     **       **   

consensus_3848#1      CAGGCGCAG-GCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGA 373
consensus_3848#2      GCGGCGGTG-GTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAAC-A 320
consensus_3848#0      GCGGCCATGCGCGAACACCAGGCACAGCAGCAGCAGCAGC-AGCAGTCGAACGACGATTG 472
                        ***   * *    *  *  *          *** * **  *           *     

consensus_3848#1      GTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTGGAAGAAGT 433
consensus_3848#2      CCATGCAC---GGCGAGCTGCACGGTAA-----CGCGAACCTCGGTCCGTTGAAGAAGA- 371
consensus_3848#0      CCACCCGTT--CGCCCACAGTCCCGTGCCGCGCAACGGGCTCGACCTTACCGATGAGTTC 530
                           *      *      *    **         *               *        

consensus_3848#1      TGAAGCAAAAGTTACCCCTTCATTTGGTGCATTTAGTCGCGATGGGGGACCGAAGGAGCA 493
consensus_3848#2      -AAAGTAATATGCTTAGTTTTAACGACTCCAAATACTCACTA------------------ 412
consensus_3848#0      CTAAAGAGTGAGAACGTGCTGAAGGGATGAGAGTAGACGGCCCGCTACCACACGCCAACC 590
                        **  *            * *     *     **  *                      

consensus_3848#1      GCAGTCTTCACGTGTGGGAAAGGGGGAAGAAGGGAAAAGGGAGCCTCATTTAACAAACAA 553
consensus_3848#2      ------------------------------------------------------------
consensus_3848#0      GCCGGTAGTTGGGGTGCGGAGTAAAGCGAGCCGAGAGTGGGAGTGGGCGCTGGGGAAGAT 650
                                                                                  

consensus_3848#1      GTAGTAGCAAAACGATTGTTCGTCCTGTTCACCTTTC 590
consensus_3848#2      -------------------------------------
consensus_3848#0      TGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTG--- 684