cluster # 3849

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Anopheles gambiae
cluster # 3849 cluster # 3849 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3849#0 length = 802 sequences # 2

consensus_3849#1 length = 673 sequences # 1

consensusID : consensus_3849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 802
fasta sequence

                              [CTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAACAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAACCGAGCGAAGAATTGGTTCAGCTGTTCGAAAAACACACCATCTATTTGGACGATTTGAAACCGCTCAAAAAAGAAGGTGAAAGTGGAAAGGTGTAATAGTTATTTAAAATAAAATTTGNTGTAGCATACAA]

[+] EMBL BX622645             [CTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAACAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAACCGAGCGAAGAATTGGTTCAGCTGTTCGAAAAACACACCATCTATTTGGACGATTTGAAACCGCTCAAAAAAGAAGGTGAAAGTGGAAAGGTGTAATAGTTATTTAAAATAAAATTTGNTGTAGCATACAA]
[+] EMBL BX623778             [ TATGGCCAACGCTATACGAAGATCCATACCGAAGTTTAATCGAGCATTAGTATTACCTGCATTCCGATTATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAGACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCACCGGTAATTCTAGACGTGGACGAGGAACGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGTATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTAGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAACAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAGCCGAGCGAAGAATTGGNTCAGCTGTTCNAAAAACACACCATCTATTTGGACGATTTGAAACC                                                                     ]




>consensus_3849#0
CTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTG
CATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAAC
AAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGG
TGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACG
AAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCA
ATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGAC
TGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACT
ACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGC
GGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAAT
CTAGCAGCGACTGGATGGCGCTGGATCTTGGAAACATTGCTCTGCACATTTTCTCCACCA
AGGCGAGAGAACAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAG
AGTACAATAAACCGAGCGAAGAATTGGTTCAGCTGTTCGAAAAACACACCATCTATTTGG
ACGATTTGAAACCGCTCAAAAAAGAAGGTGAAAGTGGAAAGGTGTAATAGTTATTTAAAA
TAAAATTTGNTGTAGCATACAA

consensusID : consensus_3849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [GACCCACGCGTCCGCTCTTACCAACGCCTGTACTGCTATTTGGTGTTAACTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGTAATGTGGAATATGCTGTCGAAACGCTTTATAGTTATACTCACCGGAGTTCCA]

[+] EMBL BM602953             [GACCCACGCGTCCGCTCTTACCAACGCCTGTACTGCTATTTGGTGTTAACTATGGCCAACGCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCATTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGCAAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGATACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTACAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGAGGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCTATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATCGTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTCAAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGACTGGATGGCGCTGGATCTTGGTAATGTGGAATATGCTGTCGAAACGCTTTATAGTTATACTCACCGGAGTTCCA]




>consensus_3849#1
GACCCACGCGTCCGCTCTTACCAACGCCTGTACTGCTATTTGGTGTTAACTATGGCCAAC
GCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCA
TTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGC
AAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGAT
ACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTA
CAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGA
GGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCT
ATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATC
GTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTC
AAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGAC
TGGATGGCGCTGGATCTTGGTAATGTGGAATATGCTGTCGAAACGCTTTATAGTTATACT
CACCGGAGTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3849#0      -------------------------------------------------CTATGGCCAAC 11
consensus_3849#1      GACCCACGCGTCCGCTCTTACCAACGCCTGTACTGCTATTTGGTGTTAACTATGGCCAAC 60
                                                                       ***********

consensus_3849#0      GCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCA 71
consensus_3849#1      GCTATACGAAGATCCATACCTAAGTTGAATCGAGCGTTAGTATTACCTGCATTCCGATCA 120
                      ************************************************************

consensus_3849#0      TTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGC 131
consensus_3849#1      TTTCATGATGAGTTTTCGTCGAAAATTCCCCTAGAAGATATCCGCAAACAAACGAAGGGC 180
                      ************************************************************

consensus_3849#0      AAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGAT 191
consensus_3849#1      AAAGAGCAGCACGTCCCAAGCGCTCGCTCAATTGCTGCCAAATATCAGGTGTTTCGAGAT 240
                      ************************************************************

consensus_3849#0      ACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTA 251
consensus_3849#1      ACCGACGCTCCGGTAATTCTAGACGTGGACGAGGAGCGGCAGATTCACGAAGCGGGTTTA 300
                      ************************************************************

consensus_3849#0      CAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGA 311
consensus_3849#1      CAACAGCCGGAAAAGATTCACGATTTGCCAGACATGTACAGTGGAATCAATTTGTCCAGA 360
                      ************************************************************

consensus_3849#0      GGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCT 371
consensus_3849#1      GGCAAAACAGGAGTGTACGAGATAGAAGATTTGGTAACGGTACTGCGACTGAACAGTGCT 420
                      ************************************************************

consensus_3849#0      ATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATC 431
consensus_3849#1      ATAAATATTTTTGTATGCACGGTGCCAAAGGACATTAAGTACGTCGACTACATGTGCATC 480
                      ************************************************************

consensus_3849#0      GTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTC 491
consensus_3849#1      GTCACGGGTCGCAGTGTAAGACACATGCGAGGAATGGCCGAGTTTGTGCGGAAGGTGTTC 540
                      ************************************************************

consensus_3849#0      AAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGAC 551
consensus_3849#1      AAAATGAAACGACATCCCAGCGATATCATACCAAAGATTGAAGGCGAATCTAGCAGCGAC 600
                      ************************************************************

consensus_3849#0      TGGATGGCGCTGGATCTTGGAAACATTGCTCTGCACATTTTCTCCACCAAGGCGAGAGAA 611
consensus_3849#1      TGGATGGCGCTGGATCTTGGTAATGT-----GGAATATGCTGTCGA--AACGCTTTATAG 653
                      ******************** **  *      * * **  * ** *  ** **   * * 

consensus_3849#0      CAATACGATCTGGAGTCGCTTTGGAGCGTTGGGTCCGAGTTTGACCGAGAGTACAATAAA 671
consensus_3849#1      TTATACTCACCGGAGTTCCA---------------------------------------- 673
                        ****   * *****  *                                         

consensus_3849#0      CCGAGCGAAGAATTGGTTCAGCTGTTCGAAAAACACACCATCTATTTGGACGATTTGAAA 731
consensus_3849#1      ------------------------------------------------------------
                                                                                  

consensus_3849#0      CCGCTCAAAAAAGAAGGTGAAAGTGGAAAGGTGTAATAGTTATTTAAAATAAAATTTGNT 791
consensus_3849#1      ------------------------------------------------------------
                                                                                  

consensus_3849#0      GTAGCATACAA 802
consensus_3849#1      -----------