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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1114 fasta sequence
[CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCGAAGTGTACTCTGTAAATGGTAAAATATATATATACGAGAGAGTACTGAATACTAGTAGCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCGCAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNCCGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGTTCNTCTTGTGATGCGCTGGTATGATCGGCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTGAGAGATTGTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTTCCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGAGGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAACCCCAAGNCAACCAGAAAAGAAAACAGATCAAAACGCAAATCNACAACACNATGGAACGGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNNCCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCANNACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCCCACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAACTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGATGAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACACANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCCGAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCACCCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC]
[+] EMBL AL694942 [CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCGAAGTGTACTCTGTAAATGGTAAAATATATATATACGAGAGAGTACTGAATACTAGTAGCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCGCAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNCCGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGTTCNTCTTGTGATGCGCTGGTATGATCGGCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTGAGAGATTGTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTTCCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGAGGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAACCCCAAGNCAACCAGAAAAGAAAACAGATCAAAACGCAAATCNACAACACNATGGAACGGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNNCCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCANNACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCCCACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAACTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGATGAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACACANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCCGAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCACCCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC]
consensusID : consensus_3850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACCTTTCCGACGCTGGCCGGTGCCGCGGCAACACTGAACGGAGCGGCCACCGACGGGCGGGATGACTCAGGCAACGGCACGATGAAACCGGAGCGTAGCAGCAAGGTTTACTTCATCGAGCAGGGCCAGCTGCAGACGGACTACGAGCTGCCGGAACGGCCAGGGCAGCCGGCGCGTGGTGCCAGCCTGAACAGTGGCATTGTGAATCCTGCCTTCACCAACGACGCCGGCGCCACCGTGATAAACATGTCCAGCACACAACCCAGCGTTATACGCGAACAGTACTGGACGTGGTCGTGTCGATGCCGGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCATTGTGATCTTTATTCTGGTGCTGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTGTGGTGGATAGTGATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACCAGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATCACAGAAACACGTCCCATCGAGAAAGTGCTCTAGCTTAAAACGGAACTCTATACCGATAAGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC]
[+] EMBL BX610074 [CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACCTTTCCGACGCTGGCCGGTGCCGCGGCAACACTGAACGGAGCGGCCACCGACGGGCGGGATGACTCAGGCAACGGCACGATGAAACCGGAGCGTAGCAGCAAGGTTTACTTCATCGAGCAGGGCCAGCTGCAGACGGACTACGAGCTGCCGGAACGGCCAGGGCAGCCGGCGCGTGGTGCCAGCCTGAACAGTGGCATTGTGAATCCTGCCTTCACCAACGACGCCGGCGCCACCGTGATAAACATGTCCAGCACACAACCCAGCGTTATACGCGAACAGTACTGGACGTGGTCGTGTCGATGCCGGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCATTGTGATCTTTATTCTGGTGCTGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTGTGGTGGATAGTGATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACCAGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATCACAGAAACACGTCCCATCGAGAAAGTGCTCTAGCTTAAAACGGAACTCTATACCGATAAGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC]
consensusID : consensus_3850#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[GGAACCGGCCTGTTCCGGTTTATCGAAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTAGCTAAGTGTGTCGGTGTATGTACTTTTGTATGCCATGCGTTCGTATAACTTCCGCCGCAAACGTCATGGGATGGAAAACCTGTGTGATTCTGCAGTCTTATCGGTATAGAGTTCCGTTTTAAGCTAGAGCACTTTCTCGATGGAACGTGTTTCTGTGATGCGTGGTATGATCGGCTGATGATTATCACTGATCGGCCCTACTGATGGGTTGTCGCTGGTTCAAGCATACTTCTCGTAAGGATGCCTCCAGTAATCCCATCATCACTATCCACCACAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCAGCACCAGAATAAAGATCACAATGAGCAGAGCTTTCTCGCGTGGGGTGAGCTCCCGCCGGCATCGACACGACCACGTCCAGTACTGTTCGCGTATAACGCTGCAAAGAGCAAGAAGAAGAAAGATGCATCAATTTATCAGACGTGAAGGTGAATCATCTTCTCGGCGCTGATTTGGGTCAGACCCAATGTGAATGTCCACAGACGG]
[-] EMBL BM626065 [GGAACCGGCCTGTTCCGGTTTATCGAAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTAGCTAAGTGTGTCGGTGTATGTACTTTTGTATGCCATGCGTTCGTATAACTTCCGCCGCAAACGTCATGGGATGGAAAACCTGTGTGATTCTGCAGTCTTATCGGTATAGAGTTCCGTTTTAAGCTAGAGCACTTTCTCGATGGAACGTGTTTCTGTGATGCGTGGTATGATCGGCTGATGATTATCACTGATCGGCCCTACTGATGGGTTGTCGCTGGTTCAAGCATACTTCTCGTAAGGATGCCTCCAGTAATCCCATCATCACTATCCACCACAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCAGCACCAGAATAAAGATCACAATGAGCAGAGCTTTCTCGCGTGGGGTGAGCTCCCGCCGGCATCGACACGACCACGTCCAGTACTGTTCGCGTATAACGCTGCAAAGAGCAAGAAGAAGAAAGATGCATCAATTTATCAGACGTGAAGGTGAATCATCTTCTCGGCGCTGATTTGGGTCAGACCCAATGTGAATGTCCACAGACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3850#0 CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCG 60
consensus_3850#2 -----------------------------------GGAACCGGCCTGTTCCGGTTTATCG 25
consensus_3850#1 -------------------------CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACC 35
*** * * *
consensus_3850#0 AAGTGTACTCTGTAAATGG--TAAAATATATATATA-CGAGAGAGTACTGAATACTAGTA 117
consensus_3850#2 AAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTA 85
consensus_3850#1 TTTCCGACGCTGGCCGGTGCCGCGGCAACAC-TGAACGGAGCGGCCACCGACGGGCGG-- 92
** *** * * * * * *** * ** *
consensus_3850#0 GCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCG 177
consensus_3850#2 GCTAAGTGTGTCGGTGTATGTACT---TTTGTATGCCATGCGTTCGTATAACTTCCGCCG 142
consensus_3850#1 GATGACTCAGGCAACG-GCACGATGAAACCGGA-GCGTAGCAGCAAGGTTTACTTCATCG 150
* * * * * * * * * ** * * * * **
consensus_3850#0 CAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNC 237
consensus_3850#2 CAAACGT-CATGGGATGGAAAACCTGTGTGATTCT-GCAGT-CTTATCGGTATAGAGTTC 199
consensus_3850#1 AGCAGGGCCA-GCTGCAGACGGACTACGAGCTGCCGGAACGGCCAG--GGCAGCCGGCGC 207
* * ** * ** ** * * * * * * * ** * * *
consensus_3850#0 CGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGT-TCNTCTTGTGATGCGCTGGT 296
consensus_3850#2 CGTTT-TAAGCTAGAGCACTTTCTC--GATGGAACGTGT-TTC---TGTGATGCG-TGGT 251
consensus_3850#1 GTGGTGCCAGCCTGAACAGTGGCAT--TGTGAATCCTGCCTTCACCAACGACGC--CGGC 263
*** ** ** * ** * ** * ** ** **
consensus_3850#0 ATGATCG-GCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTG-AGAGATT 354
consensus_3850#2 ATGATCG-GCTGATGA--TTAT-CAC-TGATC--GGCCCT--------ACTG-ATGGGTT 295
consensus_3850#1 GCCACCGTGATAAACATGTCCAGCACACAACCC-AGCGTTATACGCGAACAGTACTGGAC 322
* ** * * * * * *** * ** * * * * *
consensus_3850#0 GTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTT 414
consensus_3850#2 GT--------CGCTGGT---------TCAAGCATACTTCTCGTAAGGATGCCTCCAGTAA 338
consensus_3850#1 GTGGTCGTGTCGATGCC------GGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCAT 376
** * * * ** * *
consensus_3850#0 CCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGA 474
consensus_3850#2 TCCCATCATCACTATCCACCA---CAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCA 395
consensus_3850#1 TGTGATCTTTATTCTGGTGC----TGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTG 432
* * * * * ** * * *
consensus_3850#0 GGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAA 534
consensus_3850#2 G------CACCAGAATA--AAGATCACAATGAGCAGAGCTTTCTCGCGTGGG-GTGAGCT 446
consensus_3850#1 TGGTGGATAGTG--ATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACC 490
* ** ** * * * **
consensus_3850#0 CCCCAAGNCAACCAGAAAAGAAAA--CAGATCAAAACGCAAATCNACAACACNATGGAAC 592
consensus_3850#2 CCCGCCGGCATC--GACACGACCA--CGTCCAGTACTGTTCGCGTATAACGCTGCAAAGA 502
consensus_3850#1 AGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATC 550
* * * * * * * * * *
consensus_3850#0 GGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNN 652
consensus_3850#2 GCAAGAAGAAGAAAGATGCATCAATT---------TATCAGACGTGAAGGTGAATCATCT 553
consensus_3850#1 ACAGAAACACGTCCCATCGAGAAAGT---------GCTCTAGCTTAAA-ACGGAACTCTA 600
* * * ** * ** * * *
consensus_3850#0 CCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCAN 712
consensus_3850#2 TCTCGGCGCTGATTTGGGTCAGACCCAATGTGAAT-GTCCACAGACGG------------ 600
consensus_3850#1 TACCGATA-AGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC-------------- 645
* * ** * ** **
consensus_3850#0 NACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCC 772
consensus_3850#2 ------------------------------------------------------------
consensus_3850#1 ------------------------------------------------------------
consensus_3850#0 CACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAA 832
consensus_3850#2 ------------------------------------------------------------
consensus_3850#1 ------------------------------------------------------------
consensus_3850#0 CTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGAT 892
consensus_3850#2 ------------------------------------------------------------
consensus_3850#1 ------------------------------------------------------------
consensus_3850#0 GAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACA 952
consensus_3850#2 ------------------------------------------------------------
consensus_3850#1 ------------------------------------------------------------
consensus_3850#0 CANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCC 1012
consensus_3850#2 ------------------------------------------------------------
consensus_3850#1 ------------------------------------------------------------
consensus_3850#0 GAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCAC 1072
consensus_3850#2 ------------------------------------------------------------
consensus_3850#1 ------------------------------------------------------------
consensus_3850#0 CCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC 1114
consensus_3850#2 ------------------------------------------
consensus_3850#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||