cluster # 3853

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Anopheles gambiae
cluster # 3853 cluster # 3853 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3853#0 length = 673 sequences # 2

consensus_3853#1 length = 180 sequences # 1

consensusID : consensus_3853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 673
fasta sequence

                              [CACAAAAGGAGGTG-TTCGT-CAGCACCCAATCTAGTCGGCTCAGTGCAGCTTGCGTGAACATGCCAGAGAAAATTATCATCGTTACCGGATTCGGCCCGTTCGCAGGGGCACGAGGAGCGTAATGCGAGCTGGGAAGCGGTCAAGCTG-TG-CCGATGTGTTCCACTT-CGAAAGGATGCGTACCAGCTGCGAAAGTATCAAGTACCCGTT-TATACGAA-AGGTGAATCGTATCTTG-CA-AGATTTTGGACCAAAAA-CGGACCTGGTAGTACACGTGGGCGTC-ATGGTACGATCAACACAATCAA-CTGGAGCATTTCTCCTACACGTTCGGCTACAGTAAGCCCGA-TTCGCGCAGCATTATTTTGCCAGCGATAAGATAACACTCAGCGG-AAGCATGC-AACGACAAAGAGTGCGCGATGCTTAAAACGAATCTTAATGTCGAACGCTTGGTCCAAGGAGCTGAAACTCGAAACGAATGT-GAATGCTGTTGCTCCACGAATGTGGGAAACTACCTTTGCGGGTACCTATATGTGAAATCG-TCGATGTGAACCAGGACAGGACGCTGTTTGTGCATGTGCCTGAAGTGAACGAACCGTACACCTCGGAGCAGACGATGACGACAATCTATAATGTGATAGGCAAATGCTTGGAGCAACTTGCCGCTGAACATAAGCTGTCC]

[+] EMBL AL695001             [CACAAAAGGAGGTG TTCGT CAGCACCCAATCTAGTCGGCTCAGTGCAGCTTGCGTGAACATGCCAGAGAAAATTATCATCGTTACCGGATTCGGCCCGTTCGCAGGGGCACGAGGAGCGTAATGCGAGCTGGGAAGCGGTCAAGCTG TG CCGATGTGTTCCACTT CGAAAGGATGCGTACCAGCTGCGAAAGTATCAAGTACCCGTT TATACGAA AGGTGAATCGTATCTTG CA AGATTTTGGACCAAAAA CGGACCTGGTAGTACACGTGGGCGTC ATGGTACGATCAACACAATCAA CTGGAGCATTTCTCCTACACGTTCGGCTACAGTAAGCCCGA TTCGCGCAGCATTATTTTGCCAGCGATAAGATAACACTCAGCGG AAGCATGC AACGACAAAGAGTGCGCGATGCTTAAAACGAATCTTAATGTCGAACGCTTGGTCCAAGGAGCTGAAACTCGAAACGAATGT GAATGCTGTTGCTCCACGAATGTGGGAAACTACCTTTGCGGGTACCTATATGTGAAATCG TCGATGTGAACC                                                                                                                                ]
[+] EMBL BM637118             [       ccgGGTGTTTCGTCCAGCACCCAATCTAGTCGGCTCAGTGCAGCTTGCGTGAACATGCCAGAGAAAATTATCATCGTTACCGGATTCGGCCCGTTCGCA GGGCACGAGGAGCGTAATGCGAGCTGGGAAGCGGTCAAGCTGCTGCCCGATGTGTTCCACTTCCGAAAGGATGCGTACCAGCTGCGAAAGTATCAAGTACCCGTTATATACGAAGAGGTGAATCGTATCTTGCCACAGATTTGGAACCAAAAACCGGACCTGGTAGTACACGTGGGCGTCAATGGTACGATCAACACAATCAACCTGGAGCATTTCTCCTACACGTTCGGCTACAGTAAGCCCGATTTCGCGCAGCATTATTTGCCCAGCGATAAGATAACACTCAGCGGAAAGCATGCAAACGACAAAGAGTGCGCGATGCTTAAAACGAATCTTAATGTCGAACGCTTGGT CAAGGAGCTGAACCTCGAAACGAATGTAGAATGCTGTTGCTCGACGAATGTGGGAAACTACCTTTGCGGCTACATATATGTGAAATCGCTCGATGTGAACCAGGACAGGACGCTGTTTGTGCATGTGCCTGAAGTGAACGAACCGTACACCTCGGAGCAGACGATGACGACAATCTATAATGTGATAGGCAAATGCTTGGAGCAACTTGCCGCTGAACATAAGCTGTCC]




>consensus_3853#0
CACAAAAGGAGGTGTTCGTCAGCACCCAATCTAGTCGGCTCAGTGCAGCTTGCGTGAACA
TGCCAGAGAAAATTATCATCGTTACCGGATTCGGCCCGTTCGCAGGGGCACGAGGAGCGT
AATGCGAGCTGGGAAGCGGTCAAGCTGTGCCGATGTGTTCCACTTCGAAAGGATGCGTAC
CAGCTGCGAAAGTATCAAGTACCCGTTTATACGAAAGGTGAATCGTATCTTGCAAGATTT
TGGACCAAAAACGGACCTGGTAGTACACGTGGGCGTCATGGTACGATCAACACAATCAAC
TGGAGCATTTCTCCTACACGTTCGGCTACAGTAAGCCCGATTCGCGCAGCATTATTTTGC
CAGCGATAAGATAACACTCAGCGGAAGCATGCAACGACAAAGAGTGCGCGATGCTTAAAA
CGAATCTTAATGTCGAACGCTTGGTCCAAGGAGCTGAAACTCGAAACGAATGTGAATGCT
GTTGCTCCACGAATGTGGGAAACTACCTTTGCGGGTACCTATATGTGAAATCGTCGATGT
GAACCAGGACAGGACGCTGTTTGTGCATGTGCCTGAAGTGAACGAACCGTACACCTCGGA
GCAGACGATGACGACAATCTATAATGTGATAGGCAAATGCTTGGAGCAACTTGCCGCTGA
ACATAAGCTGTCC

consensusID : consensus_3853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [GCGGGGAAGCGGACAAGCTGCTGCCCGATGAGTGCCACTTCCGAAAGGAAGCGTACCAGCTGCGAAAGTATCAAGAACCCGGGAGAGACGAAGAGGTGAAGCGTAGCTTGCCACAGAATTGGAACCAAAAACCGGACCTGGTAGCACACGTGGGCGTCAAGGGGACGATCAACACAAGCA]

[+] EMBL BX614380             [GCGGGGAAGCGGACAAGCTGCTGCCCGATGAGTGCCACTTCCGAAAGGAAGCGTACCAGCTGCGAAAGTATCAAGAACCCGGGAGAGACGAAGAGGTGAAGCGTAGCTTGCCACAGAATTGGAACCAAAAACCGGACCTGGTAGCACACGTGGGCGTCAAGGGGACGATCAACACAAGCA]




>consensus_3853#1
GCGGGGAAGCGGACAAGCTGCTGCCCGATGAGTGCCACTTCCGAAAGGAAGCGTACCAGC
TGCGAAAGTATCAAGAACCCGGGAGAGACGAAGAGGTGAAGCGTAGCTTGCCACAGAATT
GGAACCAAAAACCGGACCTGGTAGCACACGTGGGCGTCAAGGGGACGATCAACACAAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3853#0      CACAAAAGGAGGTGTTCGTCAGCACCCAATCTAGTCGGCTCAGTGCAGCTTGCGTGAACA 60
consensus_3853#1      ------------------------------------------------------------
                                                                                  

consensus_3853#0      TGCCAGAGAAAATTATCATCGTTACCGGATTCGGCCCGTTCGCAGGGGCACGAGGAGCGT 120
consensus_3853#1      ------------------------------------------------------------
                                                                                  

consensus_3853#0      AATGCGAGCTGGGAAGCGGTCAAGCTGTG--CCGATGTGTTCCACTTC-GAAAGGATGCG 177
consensus_3853#1      -------GCGGGGAAGCGGACAAGCTGCTGCCCGATGAGTGCCACTTCCGAAAGGAAGCG 53
                             ** ********* *******    ****** ** ******* ******* ***

consensus_3853#0      TACCAGCTGCGAAAGTATCAAGTACCCGTTT-ATACGAA-AGGTGAATCGTATCTTGCAA 235
consensus_3853#1      TACCAGCTGCGAAAGTATCAAGAACCCGGGAGAGACGAAGAGGTGAAGCGTAGCTTGCCA 113
                      ********************** *****    * ***** ******* **** ***** *

consensus_3853#0      --GATTTTGGACCAAAAAC-GGACCTGGTAGTACACGTGGGCGTCATGGT-ACGATCAAC 291
consensus_3853#1      CAGAATTGGAACCAAAAACCGGACCTGGTAGCACACGTGGGCGTCAAGGGGACGATCAAC 173
                        ** ** * ********* *********** ************** **  *********

consensus_3853#0      ACAATCAACTGGAGCATTTCTCCTACACGTTCGGCTACAGTAAGCCCGATTCGCGCAGCA 351
consensus_3853#1      ACAAGCA----------------------------------------------------- 180
                      **** **                                                     

consensus_3853#0      TTATTTTGCCAGCGATAAGATAACACTCAGCGGAAGCATGCAACGACAAAGAGTGCGCGA 411
consensus_3853#1      ------------------------------------------------------------
                                                                                  

consensus_3853#0      TGCTTAAAACGAATCTTAATGTCGAACGCTTGGTCCAAGGAGCTGAAACTCGAAACGAAT 471
consensus_3853#1      ------------------------------------------------------------
                                                                                  

consensus_3853#0      GTGAATGCTGTTGCTCCACGAATGTGGGAAACTACCTTTGCGGGTACCTATATGTGAAAT 531
consensus_3853#1      ------------------------------------------------------------
                                                                                  

consensus_3853#0      CGTCGATGTGAACCAGGACAGGACGCTGTTTGTGCATGTGCCTGAAGTGAACGAACCGTA 591
consensus_3853#1      ------------------------------------------------------------
                                                                                  

consensus_3853#0      CACCTCGGAGCAGACGATGACGACAATCTATAATGTGATAGGCAAATGCTTGGAGCAACT 651
consensus_3853#1      ------------------------------------------------------------
                                                                                  

consensus_3853#0      TGCCGCTGAACATAAGCTGTCC 673
consensus_3853#1      ----------------------