cluster # 3858

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Anopheles gambiae
cluster # 3858 cluster # 3858 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3858#0 length = 643 sequences # 2

consensus_3858#1 length = 567 sequences # 1

consensusID : consensus_3858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 643
fasta sequence

                              [ATCCGAGGTTATGCAGGCGGAT-CCCGAAGACGCTTCA-CCTGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGG-CACGAC-GGCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGCCCCATTGCCGGCAGTCCTGAATACTCCCCCGCCCGAGGGGTTGGAGGTGTGCAGTAAGCGGTGGTGGATAGATGTTGTATATGTTTGTTCATT]

[+] EMBL AL695052             [ATCCGAGGTTATGCAGGCGGAT CCCGAAGACGCTTCA CCTGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGG CACGAC GGCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGCCCCATTGCCGGCAGTCCTGAATACTCCCCCGCCCGAGGGGTTGGAGGTGTGCAGTAAGCGGTGGTGGATAGATGTTGTATATGTTTGTTCATT]
[+] EMBL BX619256             [                 CGGATCCCCGAAGACGCTTCACCCTGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGANGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACNGCCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGGCNCATTGNCGGCAGTCCTGAATACTCCCCCGC                                                             ]




>consensus_3858#0
ATCCGAGGTTATGCAGGCGGATCCCGAAGACGCTTCACCTGCAGCAGATCCGGCACCATG
AATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAG
GCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACG
ATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACG
ATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACT
CCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACA
ACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCT
CGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGGCACGACGGC
AACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGG
CGCAAGTGGCCCCATTGCCGGCAGTCCTGAATACTCCCCCGCCCGAGGGGTTGGAGGTGT
GCAGTAAGCGGTGGTGGATAGATGTTGTATATGTTTGTTCATT

consensusID : consensus_3858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [TCCGCCGGAATGGTTAGAGCCGCGGCTGGCCGACTTGCTCGTGAACATACTGCAGGCGGATCCCCGAAGACGCTTCACCCTGCAGCATATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACGGCCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGT]

[+] EMBL BX611301             [TCCGCCGGAATGGTTAGAGCCGCGGCTGGCCGACTTGCTCGTGAACATACTGCAGGCGGATCCCCGAAGACGCTTCACCCTGCAGCATATCCGGCACCATGAATGGTTCCAGTTTGCACCGGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTCCACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTACACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGGACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGACGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAGCGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAGCATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACGGCCAACAGCAGCAGCAGCAGCGGCAAGCGGCGCTCGCGCAAAACTGT]




>consensus_3858#1
TCCGCCGGAATGGTTAGAGCCGCGGCTGGCCGACTTGCTCGTGAACATACTGCAGGCGGA
TCCCCGAAGACGCTTCACCCTGCAGCATATCCGGCACCATGAATGGTTCCAGTTTGCACC
GGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTC
CACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTA
CACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGG
ACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGA
CGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAG
CGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAG
CATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACGGCCAACAGCAGCAGCAGCAG
CGGCAAGCGGCGCTCGCGCAAAACTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3858#0      ------------------------------------ATCCGAGGTTAT---GCAGGCGGA 21
consensus_3858#1      TCCGCCGGAATGGTTAGAGCCGCGGCTGGCCGACTTGCTCGTGAACATACTGCAGGCGGA 60
                                                             ** *   **   *********

consensus_3858#0      TCCC-GAAGACGCTTCACC-TGCAGCAGATCCGGCACCATGAATGGTTCCAGTTTGCACC 79
consensus_3858#1      TCCCCGAAGACGCTTCACCCTGCAGCATATCCGGCACCATGAATGGTTCCAGTTTGCACC 120
                      **** ************** ******* ********************************

consensus_3858#0      GGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTC 139
consensus_3858#1      GGATGCGACCAGCCCCCTCGTACCGATACCACCGTTGAAAGGCGATTGGAATAGATGTTC 180
                      ************************************************************

consensus_3858#0      CACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTA 199
consensus_3858#1      CACCGTGCTGCCTTACCTGATAGCTCATCACTATGGAAACGATCGTGACATGCCGTACTA 240
                      ************************************************************

consensus_3858#0      CACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGG 259
consensus_3858#1      CACCGAGCACGACATTAATGAAATGGCACGGCAACAGTACGATTCGTACACAGAGGGTGG 300
                      ************************************************************

consensus_3858#0      ACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGA 319
consensus_3858#1      ACTGTACGACCGTGCCTACCTGCCCGCACCGACCATGGACTCCCTGTCGTTTCACACCGA 360
                      ************************************************************

consensus_3858#0      CGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAG 379
consensus_3858#1      CGACCAGGGCAGCGAGACGGGCCTAAGGCGTGCCTACTACAACCAGCCGAACAGTGGCAG 420
                      ************************************************************

consensus_3858#0      CGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAG 439
consensus_3858#1      CGGTCGTTCGACGGTCGAGAAGCGTCCGTCCCGCAGCTTCTCGCTGTCGCCGAAGCCGAG 480
                      ************************************************************

consensus_3858#0      CATCCGGCACATGATCGGCACCAGCTGCCCGGC-ACGACGGC-AACAGCAGCAGCAGCAG 497
consensus_3858#1      CATCCGGCACATGATCGGCACCAGCTGCCCGGCCACGACGGCCAACAGCAGCAGCAGCAG 540
                      ********************************* ******** *****************

consensus_3858#0      CGGCAAGCGGCGCTCGCGCAAAACTGTCTCGTGCATATCTTGGCGCAAGTGGCCCCATTG 557
consensus_3858#1      CGGCAAGCGGCGCTCGCGCAAAACTGT--------------------------------- 567
                      ***************************                                 

consensus_3858#0      CCGGCAGTCCTGAATACTCCCCCGCCCGAGGGGTTGGAGGTGTGCAGTAAGCGGTGGTGG 617
consensus_3858#1      ------------------------------------------------------------
                                                                                  

consensus_3858#0      ATAGATGTTGTATATGTTTGTTCATT 643
consensus_3858#1      --------------------------