cluster # 3864

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Anopheles gambiae
cluster # 3864 cluster # 3864 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3864#0 length = 1037 sequences # 2

consensus_3864#1 length = 427 sequences # 1

consensusID : consensus_3864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1037
fasta sequence

                              [GAACGGCCCCAACGATGGATATACTGCCGAGCGGGAGCATTTTCCGGGAGCTGCAGATCATCCACGAAACTGGATGCTTCTCGTCCGAGTCGTCCTTCGAGGATCAATGGCAACAGTTATCATCGTGGTGCTCCACATAGTGGTAGCGTTGGTACGGAAAAAGACTCAATCAGCTCATTCAATCTCTTAACGAGAGTGCAGTGAAAACGTGTGTGCTTAGAGGAAATACAAAAAAGAAAAGGGTGGAAAACTCCGCCACTTGTGGTGTGTATGTGTGTGAGTGTGTGTGGTGTAAGCTTCCGCAAACGAAGTGTGTTGAGTTGGGAGTGTGGGTGCGCAGAAAAGCGGCAATGTTGAAGAGTGGTTTTTAGTAAAACCCTCATCCAACCAACTCCAAACCCCAAACCGGAAGAAACTCGCGCTCGCGTACGACGATCACAGTCCGTGCCCGATCTCACACCGCATTTCAATGAGAGCGGAAACGGTAGCTCCATAAAGCGGAAACAATGTCGTCGGATAGGATACATCGTGCTGCCAAGGACGGCCTGCTGGATGTGCTGCGCGAAGCGACCCGCTCGGAAGCGAACGCCAAGGATGTGGACGGCATGACGCCCGTACTGTGGGCCGCCTTCGAAGGACATTTCGATGCGCTCAAGCTACTAGTCGCCCGCGGCGGCGACCCGGACAAGGCGGACCAGTTCGGCAACACGGCACTGCACCTGGCCGCGGCCAAGGGTCACATGCAGTGCGTCGACTTTCTCGTACAGTTCGGCGTCAATCTGTACGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATCAACAACCGGGACAAGATTTTACGCTATCTGGATGCGGCCGCCGCCACCCTGGAAGCTACCGATAGGAAAAAAGCACACGAGTACCGGGAGCAGGCGAAGAAGAAGAGCGAAAAACGGGCCCGCGAGTTTGCCAGCCGGCAGCAGAAGCTCGACCGGGAGCAGGACACTACGATAAGGATACGCCCACACCGACCATCGAACATGCTG]

[+] EMBL BX605778             [GAACGGCCCCAACGATGGATATACTGCCGAGCGGGAGCATTTTCCGGGAGCTGCAGATCATCCACGAAACTGGATGCTTCTCGTCCGAGTCGTCCTTCGAGGATCAATGGCAACAGTTATCATCGTGGTGCTCCACATAGTGGTAGCGTTGGTACGGAAAAAGACTCAATCAGCTCATTCAATCTCTTAACGAGAGTGCAGTGAAAACGTGTGTGCTTAGAGGAAATACAAAAAAGAAAAGGGTGGAAAACTCCGCCACTTGTGGTGTGTATGTGTGTGAGTGTGTGTGGTGTAAGCTTCCGCAAACGAAGTGTGTTGAGTTGGGAGTGTGGGTGCGCAGAAAAGCGGCAATGTTGAAGAGTGGTTTTTAGTAAAACCCTCATCCAACCAACTCCAAACCCCAAACCGGAAGAAACTCGCGCTCGCGTACGACGATCACAGTCCGTGCCCGATCTCACACCGCATTTCAATGAGAGCGGAAACGGTAGCTCCATAAAGCGGAAACAATGTCGTCGGATAGGATACATCGTGCTGCCAAGGACGGCCTGCTGGATGTGCTGCGCGAAGCGACCCGCTCGGAAGCGAACGCCAAGGATGTGGACGGCATGACGCCCGTACT                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX625619             [                                                                                                                                                                                                                                                                                                       GCTTCCGCAAAAGAAGTGTGTTGAGTTAGGAGTGTGGGTGCGCAGAAAAGCGGCAATGTTGAAGAGTGGTTTTTAGGAAAACCCTCATCCAACCAACTCCAAACCCAAAACCGGAAGAAACTTGCGCTCGCGTACGACGATCACAGTCCGTGCCCGATCTCACACCGCATTTCAATGAGAGCGGAAACGGTAGCTCCATAAAGCGGAAACAATGTCGTCGGATAGGATACATCGTGCTGCCAAGGACGGCCTGCTGGATGTGCTGCGCGAAGCGACCCGCTCGGAAGCGAACGCGAAGGATGTGGACGGCATGACACCGGTACTGTGGGCCGCCTTCGAAGGACATTTCGATGCGCTCAAGCTACTAGTCGCCCGCGGCGGCGACCCGGACAAGGCGGACCAGTTCGGCAACACGGCACTGCACCTGGCCGCGGCCAAGGGTCACATGCAGTGCGTCGACTTTCTCGTACAGTTCGGCGTCAATCTGTACGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATCAACAACCGGGACAAGATTTTACGCTATCTGGATGCGGCCGCCGCCACCCTGGAAGCTACCGATAGGAAAAAAGCACACGAGTACCGGGAGCAGGCGAAGAAGAAGAGCGAAAAACGGGCCCGCGAGTTTGCCAGCCGGCAGCAGAAGCTCGACCGGGAGCAGGACACTACGATAAGGATACGCCCACACCGACCATCGAACATGCTG]




>consensus_3864#0
GAACGGCCCCAACGATGGATATACTGCCGAGCGGGAGCATTTTCCGGGAGCTGCAGATCA
TCCACGAAACTGGATGCTTCTCGTCCGAGTCGTCCTTCGAGGATCAATGGCAACAGTTAT
CATCGTGGTGCTCCACATAGTGGTAGCGTTGGTACGGAAAAAGACTCAATCAGCTCATTC
AATCTCTTAACGAGAGTGCAGTGAAAACGTGTGTGCTTAGAGGAAATACAAAAAAGAAAA
GGGTGGAAAACTCCGCCACTTGTGGTGTGTATGTGTGTGAGTGTGTGTGGTGTAAGCTTC
CGCAAACGAAGTGTGTTGAGTTGGGAGTGTGGGTGCGCAGAAAAGCGGCAATGTTGAAGA
GTGGTTTTTAGTAAAACCCTCATCCAACCAACTCCAAACCCCAAACCGGAAGAAACTCGC
GCTCGCGTACGACGATCACAGTCCGTGCCCGATCTCACACCGCATTTCAATGAGAGCGGA
AACGGTAGCTCCATAAAGCGGAAACAATGTCGTCGGATAGGATACATCGTGCTGCCAAGG
ACGGCCTGCTGGATGTGCTGCGCGAAGCGACCCGCTCGGAAGCGAACGCCAAGGATGTGG
ACGGCATGACGCCCGTACTGTGGGCCGCCTTCGAAGGACATTTCGATGCGCTCAAGCTAC
TAGTCGCCCGCGGCGGCGACCCGGACAAGGCGGACCAGTTCGGCAACACGGCACTGCACC
TGGCCGCGGCCAAGGGTCACATGCAGTGCGTCGACTTTCTCGTACAGTTCGGCGTCAATC
TGTACGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATCAACAACCGGG
ACAAGATTTTACGCTATCTGGATGCGGCCGCCGCCACCCTGGAAGCTACCGATAGGAAAA
AAGCACACGAGTACCGGGAGCAGGCGAAGAAGAAGAGCGAAAAACGGGCCCGCGAGTTTG
CCAGCCGGCAGCAGAAGCTCGACCGGGAGCAGGACACTACGATAAGGATACGCCCACACC
GACCATCGAACATGCTG

consensusID : consensus_3864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [ATAGNCCGGATTCCGCTCNGGTAAGCGAACTGCGTATAGGATGTTGGACAGGCATGACACCGGTACTTTGGTCCGCCTTCGAAGGACATTTCGATGCAGCTCAAGTCTACTAGTCGCGCCAGCGGTCGTTCNGACCCGGACAAGTCGGACCAGTTCGGCAACACGGCAACTGCACCTGGCCGCGGCCAAGGGTCACATGCAGTGCTTCGACTTTCTCGTACAGTTCGGCGTCAATCTGTACGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATCAACAACCGGGACAAGATTTTACGCTATCTGGATGCGGCCGCCGCNCACCCTGGAAGCTAGCCGATAGGAAAAAAGCACACGAGTACCGGGAGCAGGCGAAAAAAAAAAAAAAAAAACAGGCATGTTACGCCNTNCCTCGGG]

[-] EMBL AL695113             [ATAGNCCGGATTCCGCTCNGGTAAGCGAACTGCGTATAGGATGTTGGACAGGCATGACACCGGTACTTTGGTCCGCCTTCGAAGGACATTTCGATGCAGCTCAAGTCTACTAGTCGCGCCAGCGGTCGTTCNGACCCGGACAAGTCGGACCAGTTCGGCAACACGGCAACTGCACCTGGCCGCGGCCAAGGGTCACATGCAGTGCTTCGACTTTCTCGTACAGTTCGGCGTCAATCTGTACGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATCAACAACCGGGACAAGATTTTACGCTATCTGGATGCGGCCGCCGCNCACCCTGGAAGCTAGCCGATAGGAAAAAAGCACACGAGTACCGGGAGCAGGCGAAAAAAAAAAAAAAAAAACAGGCATGTTACGCCNTNCCTCGGG]




>consensus_3864#1
ATAGNCCGGATTCCGCTCNGGTAAGCGAACTGCGTATAGGATGTTGGACAGGCATGACAC
CGGTACTTTGGTCCGCCTTCGAAGGACATTTCGATGCAGCTCAAGTCTACTAGTCGCGCC
AGCGGTCGTTCNGACCCGGACAAGTCGGACCAGTTCGGCAACACGGCAACTGCACCTGGC
CGCGGCCAAGGGTCACATGCAGTGCTTCGACTTTCTCGTACAGTTCGGCGTCAATCTGTA
CGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATCAACAACCGGGACAA
GATTTTACGCTATCTGGATGCGGCCGCCGCNCACCCTGGAAGCTAGCCGATAGGAAAAAA
GCACACGAGTACCGGGAGCAGGCGAAAAAAAAAAAAAAAAAACAGGCATGTTACGCCNTN
CCTCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3864#0      GAACGGCCCCAACGATGGATATACTGCCGAGCGGGAGCATTTTCCGGGAGCTGCAGATCA 60
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      TCCACGAAACTGGATGCTTCTCGTCCGAGTCGTCCTTCGAGGATCAATGGCAACAGTTAT 120
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      CATCGTGGTGCTCCACATAGTGGTAGCGTTGGTACGGAAAAAGACTCAATCAGCTCATTC 180
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      AATCTCTTAACGAGAGTGCAGTGAAAACGTGTGTGCTTAGAGGAAATACAAAAAAGAAAA 240
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      GGGTGGAAAACTCCGCCACTTGTGGTGTGTATGTGTGTGAGTGTGTGTGGTGTAAGCTTC 300
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      CGCAAACGAAGTGTGTTGAGTTGGGAGTGTGGGTGCGCAGAAAAGCGGCAATGTTGAAGA 360
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      GTGGTTTTTAGTAAAACCCTCATCCAACCAACTCCAAACCCCAAACCGGAAGAAACTCGC 420
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      GCTCGCGTACGACGATCACAGTCCGTGCCCGATCTCACACCGCATTTCAATGAGAGCGGA 480
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      AACGGTAGCTCCATAAAGCGGAAACAATGTCGTCGGATAGGATACATCGTGCTGCCAAGG 540
consensus_3864#1      ------------------------------------------------------------
                                                                                  

consensus_3864#0      ACGGCCTGCTGGATGTGCTGCGCGAAGCGACCCGCTCGGAAGCGAACGCCAAGGATGT-G 599
consensus_3864#1      --------------ATAGNCCGGATTCCGCTCNGGTAAGCGAACTGCGTATAGGATGTTG 46
                                     *    **     **  * * *  *       **   ******* *

consensus_3864#0      GAC-GGCATGACGCCCGTACTGTGGGCCGCCTTCGAAGGACATTTCGATGC-GCTCAAG- 656
consensus_3864#1      GACAGGCATGACACCGGTACTTTGGTCCGCCTTCGAAGGACATTTCGATGCAGCTCAAGT 106
                      *** ******** ** ***** *** ************************* ******* 

consensus_3864#0      CTACTAGTCGCCC--GCGGCGG---CGACCCGGACAAGGCGGACCAGTTCGGCAACACGG 711
consensus_3864#1      CTACTAGTCGCGCCAGCGGTCGTTCNGACCCGGACAAGTCGGACCAGTTCGGCAACACGG 166
                      *********** *  ****  *    ************ *********************

consensus_3864#0      CA-CTGCACCTGGCCGCGGCCAAGGGTCACATGCAGTGCGTCGACTTTCTCGTACAGTTC 770
consensus_3864#1      CAACTGCACCTGGCCGCGGCCAAGGGTCACATGCAGTGCTTCGACTTTCTCGTACAGTTC 226
                      ** ************************************ ********************

consensus_3864#0      GGCGTCAATCTGTACGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATC 830
consensus_3864#1      GGCGTCAATCTGTACGCGCTCGATATCGATCACCACAGTGCGCAGGATCTGGCCGCTATC 286
                      ************************************************************

consensus_3864#0      AACAACCGGGACAAGATTTTACGCTATCTGGATGCGGCCGCCGCC-ACCCTGGAAGCTA- 888
consensus_3864#1      AACAACCGGGACAAGATTTTACGCTATCTGGATGCGGCCGCCGCNCACCCTGGAAGCTAG 346
                      ********************************************  ************* 

consensus_3864#0      CCGATAGGAAAAAAGCACACGAGTACCGGGAGCAGGCGAAGAAGAAGAGCGAAAAACGGG 948
consensus_3864#1      CCGATAGGAAAAAAGCACACGAGTACCGGGAGCAGGCGAAAAAAAAAAAAAAAAAACAGG 406
                      **************************************** ** ** *   ****** **

consensus_3864#0      CCCGCGAGTTTGCCAGCCGGCAGCAGAAGCTCGACCGGGAGCAGGACACTACGATAAGGA 1008
consensus_3864#1      CATGTTACGCCNTNCCTCGGG--------------------------------------- 427
                      *  *  *          ***                                        

consensus_3864#0      TACGCCCACACCGACCATCGAACATGCTG 1037
consensus_3864#1      -----------------------------