cluster # 3867

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Anopheles gambiae
cluster # 3867 cluster # 3867 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3867#0 length = 559 sequences # 1

consensus_3867#1 length = 512 sequences # 1
consensus_3867#2 length = 249 sequences # 1

consensusID : consensus_3867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [CCCGAGGTTTCGCGAGCGTTGAATATGCTGTCACATTGGAAACTGACCCAAAAACCACTACTGTAAAGGTGTTTAAATTTGATCGAAAATCGTGTTGGTCTATTGGAAAATTCCTATTACTTATCGTTTGATGCACAAGACTTTATATTTTAGCAGTTTTTTTTTTGTAAAATAAATATAAAAAAAACCTCAAAACTTGTTTATCGCTACCTCTAATCACTGATTAGGGAGAACGAACATGCAAATCGAAGGTGTTAGTGAAGGGTAGAACGATCTGAGTGTGTTGTGTGTTGTGTGATTAGTTTATAATGGCCGATCGCGTAAAACCAGTGTGTGCAAACGAACGCGATACCCATAGCGAAGAACGAATAGGACTAACCGATACCGATCTTGCATACAACATGCCAAACGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAACTCTTGTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTNAG]

[+] EMBL AL695168             [CCCGAGGTTTCGCGAGCGTTGAATATGCTGTCACATTGGAAACTGACCCAAAAACCACTACTGTAAAGGTGTTTAAATTTGATCGAAAATCGTGTTGGTCTATTGGAAAATTCCTATTACTTATCGTTTGATGCACAAGACTTTATATTTTAGCAGTTTTTTTTTTGTAAAATAAATATAAAAAAAACCTCAAAACTTGTTTATCGCTACCTCTAATCACTGATTAGGGAGAACGAACATGCAAATCGAAGGTGTTAGTGAAGGGTAGAACGATCTGAGTGTGTTGTGTGTTGTGTGATTAGTTTATAATGGCCGATCGCGTAAAACCAGTGTGTGCAAACGAACGCGATACCCATAGCGAAGAACGAATAGGACTAACCGATACCGATCTTGCATACAACATGCCAAACGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAACTCTTGTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTNAG]




>consensus_3867#0
CCCGAGGTTTCGCGAGCGTTGAATATGCTGTCACATTGGAAACTGACCCAAAAACCACTA
CTGTAAAGGTGTTTAAATTTGATCGAAAATCGTGTTGGTCTATTGGAAAATTCCTATTAC
TTATCGTTTGATGCACAAGACTTTATATTTTAGCAGTTTTTTTTTTGTAAAATAAATATA
AAAAAAACCTCAAAACTTGTTTATCGCTACCTCTAATCACTGATTAGGGAGAACGAACAT
GCAAATCGAAGGTGTTAGTGAAGGGTAGAACGATCTGAGTGTGTTGTGTGTTGTGTGATT
AGTTTATAATGGCCGATCGCGTAAAACCAGTGTGTGCAAACGAACGCGATACCCATAGCG
AAGAACGAATAGGACTAACCGATACCGATCTTGCATACAACATGCCAAACGTTTATAAAA
CTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAACT
CTTGTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTT
TGGAAAAACTGTATTTNAG

consensusID : consensus_3867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [TCCCCCGAGGTTACAGGAACAGGGCAACTTGCTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTTAGTGTGTGGTATTTTAGCGCATTAGTGAGAAAGGAAGAAGATTCGAACAGTTTACACAACAGCGTACTGTGAAAAAAAGAAGAAGATTTAAATAGTAACATATATTAGAGATCATCGTAAAGGTGTAGTAGAAAATACCCAAGAACGAGGGGAGGAACGATCGAAGCGGGGCCCGTCCTTAAATTCCGTGCCGCTTTCGGTTTCGGTGCTGTACAATGAGACTGTCCTTGCCTTCCACACAGTGATGAGAAGAATTGTGGGAAAGATTGATTGCCAGCTTTTGCGAGTGTGTTTTATNTTTGATTTCCATTTTTCTCTCCCCTTCTTCCGTGTTCCGGCAATAAACGACCAATTAAACAAGCAATAGTAACAATGAAGATAAGAANACACNNCCAAACACACACACA]

[+] EMBL AL932808             [TCCCCCGAGGTTACAGGAACAGGGCAACTTGCTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTTAGTGTGTGGTATTTTAGCGCATTAGTGAGAAAGGAAGAAGATTCGAACAGTTTACACAACAGCGTACTGTGAAAAAAAGAAGAAGATTTAAATAGTAACATATATTAGAGATCATCGTAAAGGTGTAGTAGAAAATACCCAAGAACGAGGGGAGGAACGATCGAAGCGGGGCCCGTCCTTAAATTCCGTGCCGCTTTCGGTTTCGGTGCTGTACAATGAGACTGTCCTTGCCTTCCACACAGTGATGAGAAGAATTGTGGGAAAGATTGATTGCCAGCTTTTGCGAGTGTGTTTTATNTTTGATTTCCATTTTTCTCTCCCCTTCTTCCGTGTTCCGGCAATAAACGACCAATTAAACAAGCAATAGTAACAATGAAGATAAGAANACACNNCCAAACACACACACA]




>consensus_3867#1
TCCCCCGAGGTTACAGGAACAGGGCAACTTGCTTGGTGGTAAAACACACGATCAATCCCA
AAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTTAGTGTGTGGTATTTT
AGCGCATTAGTGAGAAAGGAAGAAGATTCGAACAGTTTACACAACAGCGTACTGTGAAAA
AAAGAAGAAGATTTAAATAGTAACATATATTAGAGATCATCGTAAAGGTGTAGTAGAAAA
TACCCAAGAACGAGGGGAGGAACGATCGAAGCGGGGCCCGTCCTTAAATTCCGTGCCGCT
TTCGGTTTCGGTGCTGTACAATGAGACTGTCCTTGCCTTCCACACAGTGATGAGAAGAAT
TGTGGGAAAGATTGATTGCCAGCTTTTGCGAGTGTGTTTTATNTTTGATTTCCATTTTTC
TCTCCCCTTCTTCCGTGTTCCGGCAATAAACGACCAATTAAACAAGCAATAGTAACAATG
AAGATAAGAANACACNNCCAAACACACACACA

consensusID : consensus_3867#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [CGAAGGGGTCAGTGAAGGGTAGAACGATCTGAGTGTGTCAGTTGTGTTGTGTGATCAGTCCATAATGGAGATCGCGTAAAAAAGTGGGCGCAAACGAACGCGATAAAATAGCGAAGAAGAATAGGACTAACCGATACCGATCTTGATAGAAATGCCAAAGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAATCTTGTTGGTGGTAAAACACAC]

[+] EMBL BX612217             [CGAAGGGGTCAGTGAAGGGTAGAACGATCTGAGTGTGTCAGTTGTGTTGTGTGATCAGTCCATAATGGAGATCGCGTAAAAAAGTGGGCGCAAACGAACGCGATAAAATAGCGAAGAAGAATAGGACTAACCGATACCGATCTTGATAGAAATGCCAAAGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAATCTTGTTGGTGGTAAAACACAC]




>consensus_3867#2
CGAAGGGGTCAGTGAAGGGTAGAACGATCTGAGTGTGTCAGTTGTGTTGTGTGATCAGTC
CATAATGGAGATCGCGTAAAAAAGTGGGCGCAAACGAACGCGATAAAATAGCGAAGAAGA
ATAGGACTAACCGATACCGATCTTGATAGAAATGCCAAAGTTTATAAAACTTGTAGCGAT
AGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAATCTTGTTGGTGGT
AAAACACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3867#0      -CCCGAGGTTTCGCGAGCGTTGAATATGCTGTCACATTGGAAACTGACCCAAAAACCACT 59
consensus_3867#2      ------------------------------------------------------------
consensus_3867#1      TCCCCCGAGGTTACAGGAACAGGGCAACTTGCTTGGTGGTAAA---ACACACGATCAATC 57
                                                                                  

consensus_3867#0      ACTGTAAAGGTGTTTAAATTTGATCGAAAATCGTGTTGGTCTATTGGAAAATTCCTATTA 119
consensus_3867#2      ------------------------------------------------------------
consensus_3867#1      CCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTTAGTGTGTGGTAT 117
                                                                                  

consensus_3867#0      CTTATCGT-TTGATGCACAAGACTTTATATTTTAGCAGTTTTTTTTTTGTAAAATAAATA 178
consensus_3867#2      ------------------------------------------------------------
consensus_3867#1      TTTAGCGCATTAGTGAGAAAGGAAGAAGATTCGAACAGTTTACACAAC---AGCGTACTG 174
                                                                                  

consensus_3867#0      TAAAAAAAACCTCAAAACTTGTTTATCGCTACCTCTAATCACTGATTAGGGAGAACGAAC 238
consensus_3867#2      ------------------------------------------------------------
consensus_3867#1      TGAAAAAAAGAAGAAGATTTAAATAGTAACATATATTAGAGATCATCGTAAAGGTGTAGT 234
                                                                                  

consensus_3867#0      ATGCAAATCGAAGGTGTTAGTGAAGGGTAGAACGATCTGAGTGTGTTG--TGTGTTGTGT 296
consensus_3867#2      --------CGAAGGGGTCAGTGAAGGGTAGAACGATCTGAGTGTGTCAGTTGTGTTGTGT 52
consensus_3867#1      AGAAAATACCCAAGAACGAGGGGAGGAACGATCGAAGCGGGGCCCGTCCTTAAATTCCGT 294
                              *  * *    ** * ***   ** ***   * *         *   **  **

consensus_3867#0      GATTAGTTTATAATGGCCGAT-CGCGTAAAACCAGTGTGTGC-----AAACGAACGCGAT 350
consensus_3867#2      GATCAGTCCATAATGGA-GAT-CGCGTAAAAA-AGTGGGCGC-----AAACGAACGCGAT 104
consensus_3867#1      GCCGCTTTCGGTTTCGGTGCTGTACAATGAGACTGTCCTTGCCTTCCACACAGTGATGAG 354
                      *     *      * *  * *   *    *    **    **     * **      ** 

consensus_3867#0      ACCCATAGCGAAGAACGAATAGGACTAACCGATACCGATCT--TGCATACAACATGCCAA 408
consensus_3867#2      AAA-ATAGCGAAGAA-GAATAGGACTAACCGATACCGATCT--TG-ATAGAA-ATGCCAA 158
consensus_3867#1      AAGAATTGTGGGAAAGATTGATTGCCAGCTTTTGCGAGTGTGTTTTATNTTTGATTTCCA 414
                      *   ** * *   **     *   * * *   * *   * *  *  **     **  * *

consensus_3867#0      ACGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGA 468
consensus_3867#2      A-GTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGA 217
consensus_3867#1      TTTTTCTCTCCCCTTCTTCCGTGTTCCGGCAATAAACGACCAATTAAACAAGCAATAGTA 474
                         **       *** *  **      ** * **   *   *     * ****   ** *

consensus_3867#0      ACAGGGGCAACTCTTGTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTG 528
consensus_3867#2      ACAGGGGCAA-TCTTGTTGGTGGTAAAACACAC--------------------------- 249
consensus_3867#1      ACAATGAAGATAAGAANACACNNCCAAACACACACACA---------------------- 512
                      ***  *   *               ********                           

consensus_3867#0      TTGATCGTATTTTGGAAAAACTGTATTTNAG 559
consensus_3867#2      -------------------------------
consensus_3867#1      -------------------------------