cluster # 3869

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Anopheles gambiae
cluster # 3869 cluster # 3869 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3869#0 length = 804 sequences # 2

consensus_3869#1 length = 389 sequences # 1

consensusID : consensus_3869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 804
fasta sequence

                              [CCCCGAGGTTAGCTAGTGACACTGCTCACATCATCATCATCATCAGTAGCGGCAGACGAGTCGATCGTAATGATGGAACATGGCAAACTGGTCGAAGGCATTTGCATCGACGAAACGGCCTTTACGCTGGACGATAGTGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGATGATAACGATGTTACGAAGGATCTCGATTTTAGCCGTACATCGCCCGCATTGTTTTCGATGACCTCA-CCAAGCGTGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGATCCG-CATGACCGGTCCGGTAAGCAGCTCAACGCCATTTTTTATGCCGGCGGTGGAAGGTTCGGGATTCGGGAGCTCGCTGAAGACGACAACGCACGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGAACGCCGTGGAGTGCCCGCTTGGCGGGAAGCCAGTCGAAGCAGGAGGGTGCCTTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATCGATTTTATCAAGGACTTCGAGGAGAAATACTCCAATGCAATCCATTAATGGTGTTCCTTATGGTTCGATAGAACTTGAAACAGAGTTTTTTCAATCATTTTAGGTTTATAAAACAGATGAATAACGCTGAAACTTGAGGCGGAGCTGAAAATGTTTCGGANCGGATTTTCTAAATAAACTACACCCGGTAGTTGAAGAG]

[+] EMBL AL695190             [CCCCGAGGTTAGCTAGTGACACTGCTCACATCATCATCATCATCAGTAGCGGCAGACGAGTCGATCGTAATGATGGAACATGGCAAACTGGTCGAAGGCATTTGCATCGACGAAACGGCCTTTACGCTGGACGATAGTGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGATGATAACGATGTTACGAAGGATCTCGATTTTAGCCGTACATCGCCCGCATTGTTTTCGATGACCTCA CCAAGCGTGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGATCCG CATGACCGGTCCGGTAAGCAGCTCAACGCCATTTTTTATGCCGGCGGTGGAAGGTTCGGGATTCGGGAGCTCGCTGAAGACGACAACGCACGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGA                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX623296             [                                                                                      ACTGGTCGAAGGCATTTGCATCGACGAAACGGCCTTTACGCTGGACGATAGCGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGATGATAACGATGTTACGAAGGATCTAGATTTTAGCCGTACATCGCCCTCCCTGTTTTCGATGACCTCACCCAAGCGAGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGATCCGCCATGACCGGTCCGGTTAGCAGCTCAACGCCATTTTTGATGCCAGCGGTGGAACGCTCGGGATTCGGGAGCTCGCTGAAGATGACAACGCA GTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACACCTGTGCCACAGAATCAACAGCAACTGGGTCAGCAGG GG  GGACAGCAAACGCCGTGGAGTGCCCGCTTGGCGGGAAGCCAGTCGAAGCAGGAGGGTGCCTTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATCGATTTTATCAAGGACTTCGAGGAGAAATACTCCAATGCAATCCATTAATGGTGTTCCTTATGGTTCGATAGAACTTGAAACAGAGTTTTTTCAATCATTTTAGGTTTATAAAACAGATGAATAACGCTGAAACTTGAGGCGGAGCTGAAAATGTTTCGGANCGGATTTTCTAAATAAACTACACCCGGTAGTTGAAGAG]




>consensus_3869#0
CCCCGAGGTTAGCTAGTGACACTGCTCACATCATCATCATCATCAGTAGCGGCAGACGAG
TCGATCGTAATGATGGAACATGGCAAACTGGTCGAAGGCATTTGCATCGACGAAACGGCC
TTTACGCTGGACGATAGTGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGAT
GATAACGATGTTACGAAGGATCTCGATTTTAGCCGTACATCGCCCGCATTGTTTTCGATG
ACCTCACCAAGCGTGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGAT
CCGCATGACCGGTCCGGTAAGCAGCTCAACGCCATTTTTTATGCCGGCGGTGGAAGGTTC
GGGATTCGGGAGCTCGCTGAAGACGACAACGCACGTCGGAGGTTTCGCCGGCCGCTTTGC
GGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGG
CAGGACAGCGAACGCCGTGGAGTGCCCGCTTGGCGGGAAGCCAGTCGAAGCAGGAGGGTG
CCTTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGC
TAATCGATTTTATCAAGGACTTCGAGGAGAAATACTCCAATGCAATCCATTAATGGTGTT
CCTTATGGTTCGATAGAACTTGAAACAGAGTTTTTTCAATCATTTTAGGTTTATAAAACA
GATGAATAACGCTGAAACTTGAGGCGGAGCTGAAAATGTTTCGGANCGGATTTTCTAAAT
AAACTACACCCGGTAGTTGAAGAG

consensusID : consensus_3869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [TCGGGATTCGGGAGCTCGCTGAAGACGACAACGCAGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGAACGCCGCGGAGTGGCCGCCCGGCGGGAAGCCAGTCGAAGCAGGCGGGTGCATTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATTGATTTTATCAAAGGCTTCGAGGAAAAGTACTCCACTGCAATCCATTAATGATGTTCCTTATGGTTCGATAGAACTTGAAACAGAGGTTTATAAAACTGATGAATAACGTTGAAACTTGAGGTGGAGCTGAAAATGTTTCGGAT]

[-] EMBL CNS09MZJ             [TCGGGATTCGGGAGCTCGCTGAAGACGACAACGCAGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGAACGCCGCGGAGTGGCCGCCCGGCGGGAAGCCAGTCGAAGCAGGCGGGTGCATTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATTGATTTTATCAAAGGCTTCGAGGAAAAGTACTCCACTGCAATCCATTAATGATGTTCCTTATGGTTCGATAGAACTTGAAACAGAGGTTTATAAAACTGATGAATAACGTTGAAACTTGAGGTGGAGCTGAAAATGTTTCGGAT]




>consensus_3869#1
TCGGGATTCGGGAGCTCGCTGAAGACGACAACGCAGTCGGAGGTTTCGCCGGCCGCTTTG
CGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAG
GCAGGACAGCGAACGCCGCGGAGTGGCCGCCCGGCGGGAAGCCAGTCGAAGCAGGCGGGT
GCATTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAG
CTAATTGATTTTATCAAAGGCTTCGAGGAAAAGTACTCCACTGCAATCCATTAATGATGT
TCCTTATGGTTCGATAGAACTTGAAACAGAGGTTTATAAAACTGATGAATAACGTTGAAA
CTTGAGGTGGAGCTGAAAATGTTTCGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3869#0      CCCCGAGGTTAGCTAGTGACACTGCTCACATCATCATCATCATCAGTAGCGGCAGACGAG 60
consensus_3869#1      ------------------------------------------------------------
                                                                                  

consensus_3869#0      TCGATCGTAATGATGGAACATGGCAAACTGGTCGAAGGCATTTGCATCGACGAAACGGCC 120
consensus_3869#1      ------------------------------------------------------------
                                                                                  

consensus_3869#0      TTTACGCTGGACGATAGTGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGAT 180
consensus_3869#1      ------------------------------------------------------------
                                                                                  

consensus_3869#0      GATAACGATGTTACGAAGGATCTCGATTTTAGCCGTACATCGCCCGCATTGTTTTCGATG 240
consensus_3869#1      ------------------------------------------------------------
                                                                                  

consensus_3869#0      ACCTCACCAAGCGTGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGAT 300
consensus_3869#1      ------------------------------------------------------------
                                                                                  

consensus_3869#0      CCGCATGACCGGTCCGGTAAGCAGCTCAACGCCATTTTTTATGCCGGCGGTGGAAGGTTC 360
consensus_3869#1      ----------------------------------------------------------TC 2
                                                                                **

consensus_3869#0      GGGATTCGGGAGCTCGCTGAAGACGACAACGCACGTCGGAGGTTTCGCCGGCCGCTTTGC 420
consensus_3869#1      GGGATTCGGGAGCTCGCTGAAGACGACAACGCA-GTCGGAGGTTTCGCCGGCCGCTTTGC 61
                      ********************************* **************************

consensus_3869#0      GGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGG 480
consensus_3869#1      GGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGG 121
                      ************************************************************

consensus_3869#0      CAGGACAGCGAACGCCGTGGAGTGCCCGCTTGGCGGGAAGCCAGTCGAAGCAGGAGGGTG 540
consensus_3869#1      CAGGACAGCGAACGCCGCGGAGTGGCCGCCCGGCGGGAAGCCAGTCGAAGCAGGCGGGTG 181
                      ***************** ****** ****  *********************** *****

consensus_3869#0      CCTTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGC 600
consensus_3869#1      CATTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGC 241
                      * **********************************************************

consensus_3869#0      TAATCGATTTTATCAAGGACTTCGAGGAGAAATACTCCAATGCAATCCATTAATGGTGTT 660
consensus_3869#1      TAATTGATTTTATCAAAGGCTTCGAGGAAAAGTACTCCACTGCAATCCATTAATGATGTT 301
                      **** *********** * ********* ** ******* *************** ****

consensus_3869#0      CCTTATGGTTCGATAGAACTTGAAACAGAGTTTTTTCAATCATTTTAGGTTTATAAAACA 720
consensus_3869#1      CCTTATGGTTCGATAGAACTTGAAACAGAG------------------GTTTATAAAACT 343
                      ******************************                  *********** 

consensus_3869#0      GATGAATAACGCTGAAACTTGAGGCGGAGCTGAAAATGTTTCGGANCGGATTTTCTAAAT 780
consensus_3869#1      GATGAATAACGTTGAAACTTGAGGTGGAGCTGAAAATGTTTCGGAT-------------- 389
                      *********** ************ ********************               

consensus_3869#0      AAACTACACCCGGTAGTTGAAGAG 804
consensus_3869#1      ------------------------