cluster # 3882

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Anopheles gambiae
cluster # 3882 cluster # 3882 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3882#0 length = 1076 sequences # 2

consensus_3882#1 length = 694 sequences # 1

consensusID : consensus_3882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1076
fasta sequence

                              [CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACATCTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGAGGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGTTTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGC--AAAAAAAACTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC]

[+] EMBL BM601567             [CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACATCTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGAGGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGTTTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGC  AAAAAAAACTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX615736             [                                                                                                                                                                                                                                                                                                                                                              TCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAAAGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAACTCATTCTGATGTGAGTG TTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC]




>consensus_3882#0
CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACAT
CTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGA
GGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGT
TTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAA
GGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGT
GGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGAC
GTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCT
AACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAACT
CATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGT
TTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCAC
GCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAAT
GAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGC
TAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCT
AAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCG
ACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA
ACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCA
AAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGAC
CTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC

consensusID : consensus_3882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA]

[+] EMBL BX621192             [AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA]




>consensus_3882#1
AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCAC
TACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCA
AAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGG
TTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGA
ATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGG
CGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCT
GTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGC
AATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTT
GGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACG
ATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTT
TTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAA
GTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3882#0      CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACAT 60
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      CTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGA 120
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      GGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGT 180
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      TTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAA 240
consensus_3882#1      ----------------------------------------AGACACGAGTGCTAAGACAA 20
                                                              ********************

consensus_3882#0      GGGTATGGGAGGGACATAGAAAAAAAAA-CACTTTGCCACTACGATTACACACCCGACCG 299
consensus_3882#1      GGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCG 80
                      **************************** *******************************

consensus_3882#0      TGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGA 359
consensus_3882#1      TGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGA 140
                      ********************** *************************************

consensus_3882#0      CGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACC 419
consensus_3882#1      CGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACC 200
                      *************************************************** **** ***

consensus_3882#0      TAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAA- 478
consensus_3882#1      TAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAA 260
                      *********************************************************** 

consensus_3882#0      --CTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAG 536
consensus_3882#1      AACTCATTCTGATGTGAGTGTTT-GGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAG 319
                        ********************* ************************************

consensus_3882#0      GTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGT 596
consensus_3882#1      GTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGT 379
                      ************************************************************

consensus_3882#0      TCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAG 656
consensus_3882#1      TCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAG 439
                      ************************************************************

consensus_3882#0      GAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGC 716
consensus_3882#1      GAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGC 499
                      ******************************* ****************************

consensus_3882#0      ATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCG--------- 767
consensus_3882#1      ATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAAC 559
                      *** ************* *** *****************************         

consensus_3882#0      -ATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAA 826
consensus_3882#1      GATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAA 619
                       ****************************** ****************************

consensus_3882#0      CGCTGATATGACCGACTCGGCC-GGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAG 885
consensus_3882#1      CGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAG 679
                      ********************** ************* ***********************

consensus_3882#0      ACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGC 945
consensus_3882#1      ACCGGGTGTACTGAA--------------------------------------------- 694
                      ***************                                             

consensus_3882#0      ATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACG 1005
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      CAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTAC 1065
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      GTTAAAAACAC 1076
consensus_3882#1      -----------