cluster # 3884

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Anopheles gambiae
cluster # 3884 cluster # 3884 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3884#0 length = 691 sequences # 1

consensus_3884#1 length = 669 sequences # 1
consensus_3884#2 length = 219 sequences # 1

consensusID : consensus_3884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CCGGAGCGCAGTGGCAGAAGCAGCAGGCGATGCAATAGCAACAATAGCAACAAAACAGGCAAGCCCACAAAATCCATCCATCCATCCAAGTAGACAAAGCGGCGAGATAGCTTAAGTAGAGCATCAACCCGTGCGGGAAGCGCGAAATCCTCTTGATAAGAGAGCACCCGGCGGAAGCCGAGAAGAAGTCCGTTAGATAACCTGCGCTTGCAACGGCGGTAATTTTGCTGTACGGCCCCGTTGCCAGATGCAGATTTTATATAACCTTCACTGCTGCACATAGTGCAAGTGCAGTGCAGTGTGTGATTGCTGCAGTTGGTGGTGGTACACTTGCTTCTCCATGCTGTTGGGCTAGGTCGTTCGTGCTCGTGTGCACAATCAAAGATGGACAACGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGCTGCAGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGG]

[+] EMBL BM606808             [CCGGAGCGCAGTGGCAGAAGCAGCAGGCGATGCAATAGCAACAATAGCAACAAAACAGGCAAGCCCACAAAATCCATCCATCCATCCAAGTAGACAAAGCGGCGAGATAGCTTAAGTAGAGCATCAACCCGTGCGGGAAGCGCGAAATCCTCTTGATAAGAGAGCACCCGGCGGAAGCCGAGAAGAAGTCCGTTAGATAACCTGCGCTTGCAACGGCGGTAATTTTGCTGTACGGCCCCGTTGCCAGATGCAGATTTTATATAACCTTCACTGCTGCACATAGTGCAAGTGCAGTGCAGTGTGTGATTGCTGCAGTTGGTGGTGGTACACTTGCTTCTCCATGCTGTTGGGCTAGGTCGTTCGTGCTCGTGTGCACAATCAAAGATGGACAACGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGCTGCAGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGG]




>consensus_3884#0
CCGGAGCGCAGTGGCAGAAGCAGCAGGCGATGCAATAGCAACAATAGCAACAAAACAGGC
AAGCCCACAAAATCCATCCATCCATCCAAGTAGACAAAGCGGCGAGATAGCTTAAGTAGA
GCATCAACCCGTGCGGGAAGCGCGAAATCCTCTTGATAAGAGAGCACCCGGCGGAAGCCG
AGAAGAAGTCCGTTAGATAACCTGCGCTTGCAACGGCGGTAATTTTGCTGTACGGCCCCG
TTGCCAGATGCAGATTTTATATAACCTTCACTGCTGCACATAGTGCAAGTGCAGTGCAGT
GTGTGATTGCTGCAGTTGGTGGTGGTACACTTGCTTCTCCATGCTGTTGGGCTAGGTCGT
TCGTGCTCGTGTGCACAATCAAAGATGGACAACGAAAGCATCTCGCACGCATCGGGCGGA
CTTGGTAGCACGTTGATTGCTGCAGTTCCGAACTGGTTCGGATGGATGCATAATTTATCG
CTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCC
ATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAA
GATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAA
CTGTTTCATGGATACGAAGTAACCGGGCTGG

consensusID : consensus_3884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGCGGACGCGTGGGCGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGGAGCACCTGCCGGAAACGGGTGGCGGCGCACTGCTGATCTATTACCACGGTGCGCTGCCCATCGACATGTACTACCTGACGGCGGAAACGATGCTGAAGTGCAACCGGCTGATTCACACCGTTGGCGATCGGTTTCTGGACCGCATTCCCGGCTGGCGGCTCGTTTCGCGCGTGATGAACGTTACCTCCGGCTCGGTGCAATCATGCGTGGCAACGTTGCGTGCCGGTGAGCTGCTGTCGATTGCACCGGGCGGCGTGTACGAGGCCCAGTTCGGCGACAGTGTGTACGAGGTGCTGTGGAAGAATCGAACAGGATTCGCCCGAGTGGCGCTGGAAGCCAAAGTGCCCATCATACCCATGTT]

[+] EMBL BM601520             [CCGCGGACGCGTGGGCGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGGAGCACCTGCCGGAAACGGGTGGCGGCGCACTGCTGATCTATTACCACGGTGCGCTGCCCATCGACATGTACTACCTGACGGCGGAAACGATGCTGAAGTGCAACCGGCTGATTCACACCGTTGGCGATCGGTTTCTGGACCGCATTCCCGGCTGGCGGCTCGTTTCGCGCGTGATGAACGTTACCTCCGGCTCGGTGCAATCATGCGTGGCAACGTTGCGTGCCGGTGAGCTGCTGTCGATTGCACCGGGCGGCGTGTACGAGGCCCAGTTCGGCGACAGTGTGTACGAGGTGCTGTGGAAGAATCGAACAGGATTCGCCCGAGTGGCGCTGGAAGCCAAAGTGCCCATCATACCCATGTT]




>consensus_3884#1
CCGCGGACGCGTGGGCGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGAT
TGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCT
GCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAA
TTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCG
ATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAAC
CGGGCTGGAGCACCTGCCGGAAACGGGTGGCGGCGCACTGCTGATCTATTACCACGGTGC
GCTGCCCATCGACATGTACTACCTGACGGCGGAAACGATGCTGAAGTGCAACCGGCTGAT
TCACACCGTTGGCGATCGGTTTCTGGACCGCATTCCCGGCTGGCGGCTCGTTTCGCGCGT
GATGAACGTTACCTCCGGCTCGGTGCAATCATGCGTGGCAACGTTGCGTGCCGGTGAGCT
GCTGTCGATTGCACCGGGCGGCGTGTACGAGGCCCAGTTCGGCGACAGTGTGTACGAGGT
GCTGTGGAAGAATCGAACAGGATTCGCCCGAGTGGCGCTGGAAGCCAAAGTGCCCATCAT
ACCCATGTT

consensusID : consensus_3884#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [AATGAAGAAGAGTCCTGGAAAGCGGCTCGAGGGCTAAGGGCTTACGTGTGGAAACTCCACAGGAAACGGCTTCAGGGATACGAAGTAACCGGGCTGGAGCACCCGCCGGAAACGGGAGGCGGCGCACTGCTGAACTAATACCACGGGGCGCGGCCCAGCGACATGAACTACCTGACGGCGGAAACGAAGCCGAAGGGCAACCGGCCGAATCACACCGGG]

[+] EMBL BX613767             [AATGAAGAAGAGTCCTGGAAAGCGGCTCGAGGGCTAAGGGCTTACGTGTGGAAACTCCACAGGAAACGGCTTCAGGGATACGAAGTAACCGGGCTGGAGCACCCGCCGGAAACGGGAGGCGGCGCACTGCTGAACTAATACCACGGGGCGCGGCCCAGCGACATGAACTACCTGACGGCGGAAACGAAGCCGAAGGGCAACCGGCCGAATCACACCGGG]




>consensus_3884#2
AATGAAGAAGAGTCCTGGAAAGCGGCTCGAGGGCTAAGGGCTTACGTGTGGAAACTCCAC
AGGAAACGGCTTCAGGGATACGAAGTAACCGGGCTGGAGCACCCGCCGGAAACGGGAGGC
GGCGCACTGCTGAACTAATACCACGGGGCGCGGCCCAGCGACATGAACTACCTGACGGCG
GAAACGAAGCCGAAGGGCAACCGGCCGAATCACACCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3884#1      CCGCGGACGCGTGGGCGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGAT 60
consensus_3884#2      ------------------------------------------------------------
consensus_3884#0      -CCGGAGCGCAGTGGCAGAAGCAGCAGGCGATGCAATAGCAACAATAGCAACAAAACAGG 59
                                                                                  

consensus_3884#1      TGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCT 120
consensus_3884#2      ------------------------------------------------------------
consensus_3884#0      CAAGCCCACAAAATCCATCCATCCATCCAAGTAGACAAAGCGGCGAGATAGCTTAAGTAG 119
                                                                                  

consensus_3884#1      GCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAA 180
consensus_3884#2      ------------------------------------------------------------
consensus_3884#0      AGCATCA-ACCCGTGCGGGAAGCGCGAAATCCTCTTGATAAGAGAGCACCCGGCG-GAAG 177
                                                                                  

consensus_3884#1      TTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATG--AGTTCTGGAAAGCGGCT 238
consensus_3884#2      -------------------------------AATGAAGAAG--AGTCCTGGAAAGCGGCT 27
consensus_3884#0      CCGAGAAGAAGTCCGTTAGATAACCTGCGCTTGCAACGGCGGTAATTTTGCTGTACGGCC 237
                                                         * *  *  * *  **     **** 

consensus_3884#1      CGATGGCTAATGGCTTACGT-GTGGAATCTTCACAGT---AAACTGTTTCATGGATACGA 294
consensus_3884#2      CGAGGGCTAAGGGCTTACGT-GTGGAAACTCCACAGG---AAACGGCTTCAGGGATACGA 83
consensus_3884#0      CCGTTGCCAGATGCAGATTTTATATAACCTTCACTGCTGCACATAGTGCAAGTGCAGTGC 297
                      *    ** *   **  *  *  *  ** ** *** *    * *  *    *  *    * 

consensus_3884#1      AGTAACCGG--GCTGGAGCACCTGCCGGAA-ACGGGTGGCGGCGCACTGCTGATCTATTA 351
consensus_3884#2      AGTAACCGG--GCTGGAGCACCCGCCGGAA-ACGGGAGGCGGCGCACTGCTGAACTAATA 140
consensus_3884#0      AGTGTGTGATTGCTGCAGTTGGTGGTGGTACACTTGCTTCTCCATGCTGTTGGGCTAGGT 357
                      ***    *   **** **     *  ** * **  *   *  *   *** **  ***   

consensus_3884#1      CCACGGTGCGCTGCCCATCGACATGTACTACCTGACGGCGGAAACGATGCTGAAGTGCAA 411
consensus_3884#2      CCACGGGGCGCGGCCCAGCGACATGAACTACCTGACGGCGGAAACGAAGCCGAAGGGCAA 200
consensus_3884#0      CGTTCGTGCTCGTGTGCACAATCAAAGATGGACAACGAAAGCATCTCGCACGCATCG-GG 416
                      *    * ** *       * *       *     ***   * * *      * *  *   

consensus_3884#1      CCGGCTGATTCACACCGTTGGCGATCGGTTTCTGGACCGCATTC--CCGGCTGGCGGCTC 469
consensus_3884#2      CCGGCCGAATCACACCGGG----------------------------------------- 219
consensus_3884#0      CGGACTTGGTAGCACGTTGATTGCTGCAGTTCCGAACTGGTTCGGATGGATGCATAATTT 476
                      * * *    *  ***                                             

consensus_3884#1      GTTTCGCGCGTGATGAACGTTACCTCCGGCTCGGTGCAATCATGCGTGGCAACGTTGCGT 529
consensus_3884#2      ------------------------------------------------------------
consensus_3884#0      ATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTC 536
                                                                                  

consensus_3884#1      GCCGGTGAGCTGCTGTCGATTGCACCGGGCGGCGTGTACGAGGCCCAGTTCGGCGA-CAG 588
consensus_3884#2      ------------------------------------------------------------
consensus_3884#0      CTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAA 596
                                                                                  

consensus_3884#1      TGTGTACGAGGTGCTGTGGAAGAATCGAACAGGATTCGCCCGAGTGGCG---CTGGAAGC 645
consensus_3884#2      ------------------------------------------------------------
consensus_3884#0      CGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAG 656
                                                                                  

consensus_3884#1      CAAAGTGCCCATCATACCCATGTT----------- 669
consensus_3884#2      -----------------------------------
consensus_3884#0      TAAACTGTTTCATGGATACGAAGTAACCGGGCTGG 691