cluster # 3897

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Anopheles gambiae
cluster # 3897 cluster # 3897 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3897#0 length = 865 sequences # 2

consensus_3897#1 length = 483 sequences # 1

consensusID : consensus_3897#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 865
fasta sequence

                              [GATCGCCCCAGGCTTAGAGCAAAGAAGGAAGCGGGCCGCATCACGAACGTCTAGCTGCAGAAGAAAATATCCTCCATCTTCTACTACCTGTGCGTCGTGACGCTCCAGTACGTGGCGCCCATCCTGATGTGCTTGTTCTTCGCGCTCATGTACAAAACGCTCGGCGAGTACACGTGGAGCGGTGTGCTGAAGGAGTCGCTACCGCTGGACGAGTGCTCCGCCGACCTGGAGTACGAACGGGCGATGCTGGCAACGGTGGCCAGCGAGCCAGGAGCGGCTGTTGATGCGCTCGACTTCCAAGACATCACGCCGGAGGGCGAGGGGGAACAGCAGGTGCCGGTAGAGGACAACATACTCACCACCGCGCAGAGCTTCCAGCTGTCGCTGCAAAGTCTCAAGTCGGTCTTCACCAAAGACGTGTACCGTGGGCTGTTNAGGCTTTGCCACGTGGTGG-AGCTGCTTCATCTGGTTCGCGGCCAGCTCACTCGGTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCCAAACGCCCTCCACGGACAT-TGT-CCACCGAGCTCTGGTGCAG-ATGTCGCGATGTACATAATAGCAAGCAATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCCGNCGACTCCGTACGATGAAGAAGGGCCGGGCATTTTTCGTTGCAACACTCCAAGCGCAACGCAATCGTCAATCAGCTAACTAGCTTTTAACCTTTTTCTCCTTTTGTGCGCTAAATGTNCTGGCCTTCTGTGTACTGCGACTAATGCCCTTAACTGCGAATACCGGGTCGCNGTAAATTATCGGTGGTGGTCTATCGNAAATATGTATGNACGATATATAA]

[+] EMBL AL697623             [GATCGCCCCAGGCTTAGAGCAAAGAAGGAAGCGGGCCGCATCACGAACGTCTAGCTGCAGAAGAAAATATCCTCCATCTTCTACTACCTGTGCGTCGTGACGCTCCAGTACGTGGCGCCCATCCTGATGTGCTTGTTCTTCGCGCTCATGTACAAAACGCTCGGCGAGTACACGTGGAGCGGTGTGCTGAAGGAGTCGCTACCGCTGGACGAGTGCTCCGCCGACCTGGAGTACGAACGGGCGATGCTGGCAACGGTGGCCAGCGAGCCAGGAGCGGCTGTTGATGCGCTCGACTTCCAAGACATCACGCCGGAGGGCGAGGGGGAACAGCAGGTGCCGGTAGAGGACAACATACTCACCACCGCGCAGAGCTTCCAGCTGTCGCTGCAAAGTCTCAAGTCGGTCTTCACCAAAGACGTGTACCGTGGGCTGTTNAGGCTTTGCCACGTGGTGG AGCTGCTTCATCTGGTTCGCGGCCAGCTCACTCGGTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCCAAACGCCCTCCACGGACAT TGT CCACCGAGCTCTGGTGCAG ATGTCGCGATGTACATAATAGCAAGCAATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCC                                                                                                                                                                                                                             ]
[+] EMBL AL695622             [                                                                                             ccgaggtaGCTCCAGTACGTGGCGCCCAT CTTATGTGCTTGTTCTTCGCGCTCATGTACAAAACGCTCGGCGAGTACACGTGGAGCGGTGTGCTGAAGGAGTCGCTGCCGCTGGACGAGTGCTCCGCCGACCTGGAGTACGAACGGGCGATGCTAGCAACGGTGGCCAGCGAGCCAGGAGCGGCTGTTGATGCGCTCGACTTCCAAGACATCACGCCGGAGGGCGAGGGGGAACAGCAGGTGCCGGTAGAGGACAACATACTCACCA CGCGCAGAGCTTCCAGCTGTCGCTGCAAAGTCTCAAGTCGGTCTTCACCAAAGACGTGTACCGTGGGCTGTT TGGCTTTGCCACGTGGTGGCAGCTGCTTCATCTGGTTCGCGGCCAGCTCACTCGGTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCCAAACGCCCTCCACGG CATNNGTACCACCGAGCTCTGGTGCAGCATGTCGCGATGTACATAATAGCAAGCAATCATCTGTCGATCGTNTAGTCGTCGCTTCATTTCCGNCGACTCCGTACGATGAAGAAGGGCCGGGCATTTTTCGTTGCAACACTCCAAGCGCAACGCAATCGTCAATCAGCTAACTAGCTTTTAACCTTTTTCTCCTTTTGTGCGCTAAATGTNCTGGCCTTCTGTGTACTGCGACTAATGCCCTTAACTGCGAATACCGGGTCGCNGTAAATTATCGGTGGTGGTCTATCGNAAATATGTATGNACGATATATAA]




>consensus_3897#0
GATCGCCCCAGGCTTAGAGCAAAGAAGGAAGCGGGCCGCATCACGAACGTCTAGCTGCAG
AAGAAAATATCCTCCATCTTCTACTACCTGTGCGTCGTGACGCTCCAGTACGTGGCGCCC
ATCCTGATGTGCTTGTTCTTCGCGCTCATGTACAAAACGCTCGGCGAGTACACGTGGAGC
GGTGTGCTGAAGGAGTCGCTACCGCTGGACGAGTGCTCCGCCGACCTGGAGTACGAACGG
GCGATGCTGGCAACGGTGGCCAGCGAGCCAGGAGCGGCTGTTGATGCGCTCGACTTCCAA
GACATCACGCCGGAGGGCGAGGGGGAACAGCAGGTGCCGGTAGAGGACAACATACTCACC
ACCGCGCAGAGCTTCCAGCTGTCGCTGCAAAGTCTCAAGTCGGTCTTCACCAAAGACGTG
TACCGTGGGCTGTTNAGGCTTTGCCACGTGGTGGAGCTGCTTCATCTGGTTCGCGGCCAG
CTCACTCGGTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCC
AAACGCCCTCCACGGACATTGTCCACCGAGCTCTGGTGCAGATGTCGCGATGTACATAAT
AGCAAGCAATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCCGNCGACTCCGTACGAT
GAAGAAGGGCCGGGCATTTTTCGTTGCAACACTCCAAGCGCAACGCAATCGTCAATCAGC
TAACTAGCTTTTAACCTTTTTCTCCTTTTGTGCGCTAAATGTNCTGGCCTTCTGTGTACT
GCGACTAATGCCCTTAACTGCGAATACCGGGTCGCNGTAAATTATCGGTGGTGGTCTATC
GNAAATATGTATGNACGATATATAA

consensusID : consensus_3897#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [GTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCCATACGCCCTCCACGGCCATTGTCCACCGAGCTCTGGTGCAGATGTCGCGATGTACATAATAGCAAGCAATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCCGCCGACTCCGTACGATGAAGAGGGCCGGCATTTTCGTTGCACCATCCAACGCAACGCAATCGTCAATCAGCTACTAGTTTTAACTTTTCTCCTTTGTGCGTAATGTTTGGCTTTGTGTTTGCGATTATGCCTTAATGCGATACCGGTCGCGTAATTTTGTTGTGGTTTTCGTTTATTTGTTTGTAGATTTATTATTTACGTTTTCGTGTTCGCTTCGGTCTAAGTGAATGAAACAAGAAAGTCATTAGAGTAGAGAACATTTCACAGAAACTGTCAATAAAAACCATTTTACTCTAAAAAAAAAATAAAAAAAAAGGCAGCATGTGC]

[-] EMBL BX466771             [GTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCCATACGCCCTCCACGGCCATTGTCCACCGAGCTCTGGTGCAGATGTCGCGATGTACATAATAGCAAGCAATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCCGCCGACTCCGTACGATGAAGAGGGCCGGCATTTTCGTTGCACCATCCAACGCAACGCAATCGTCAATCAGCTACTAGTTTTAACTTTTCTCCTTTGTGCGTAATGTTTGGCTTTGTGTTTGCGATTATGCCTTAATGCGATACCGGTCGCGTAATTTTGTTGTGGTTTTCGTTTATTTGTTTGTAGATTTATTATTTACGTTTTCGTGTTCGCTTCGGTCTAAGTGAATGAAACAAGAAAGTCATTAGAGTAGAGAACATTTCACAGAAACTGTCAATAAAAACCATTTTACTCTAAAAAAAAAATAAAAAAAAAGGCAGCATGTGC]




>consensus_3897#1
GTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCCATACGCCC
TCCACGGCCATTGTCCACCGAGCTCTGGTGCAGATGTCGCGATGTACATAATAGCAAGCA
ATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCCGCCGACTCCGTACGATGAAGAGGG
CCGGCATTTTCGTTGCACCATCCAACGCAACGCAATCGTCAATCAGCTACTAGTTTTAAC
TTTTCTCCTTTGTGCGTAATGTTTGGCTTTGTGTTTGCGATTATGCCTTAATGCGATACC
GGTCGCGTAATTTTGTTGTGGTTTTCGTTTATTTGTTTGTAGATTTATTATTTACGTTTT
CGTGTTCGCTTCGGTCTAAGTGAATGAAACAAGAAAGTCATTAGAGTAGAGAACATTTCA
CAGAAACTGTCAATAAAAACCATTTTACTCTAAAAAAAAAATAAAAAAAAAGGCAGCATG
TGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3897#0      GATCGCCCCAGGCTTAGAGCAAAGAAGGAAGCGGGCCGCATCACGAACGTCTAGCTGCAG 60
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      AAGAAAATATCCTCCATCTTCTACTACCTGTGCGTCGTGACGCTCCAGTACGTGGCGCCC 120
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      ATCCTGATGTGCTTGTTCTTCGCGCTCATGTACAAAACGCTCGGCGAGTACACGTGGAGC 180
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      GGTGTGCTGAAGGAGTCGCTACCGCTGGACGAGTGCTCCGCCGACCTGGAGTACGAACGG 240
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      GCGATGCTGGCAACGGTGGCCAGCGAGCCAGGAGCGGCTGTTGATGCGCTCGACTTCCAA 300
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      GACATCACGCCGGAGGGCGAGGGGGAACAGCAGGTGCCGGTAGAGGACAACATACTCACC 360
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      ACCGCGCAGAGCTTCCAGCTGTCGCTGCAAAGTCTCAAGTCGGTCTTCACCAAAGACGTG 420
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      TACCGTGGGCTGTTNAGGCTTTGCCACGTGGTGGAGCTGCTTCATCTGGTTCGCGGCCAG 480
consensus_3897#1      ------------------------------------------------------------
                                                                                  

consensus_3897#0      CTCACTCGGTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCC 540
consensus_3897#1      --------GTATGGTGTATCAGTCGTACTTTACGAAATCGTGAGCTAGACCTTACCCTCC 52
                              ****************************************************

consensus_3897#0      AAACGCCCTCCACGGACATTGTCCACCGAGCTCTGGTGCAGATGTCGCGATGTACATAAT 600
consensus_3897#1      ATACGCCCTCCACGGCCATTGTCCACCGAGCTCTGGTGCAGATGTCGCGATGTACATAAT 112
                      * ************* ********************************************

consensus_3897#0      AGCAAGCAATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCCGNCGACTCCGTACGAT 660
consensus_3897#1      AGCAAGCAATCATCTGTCGATCGTTTAGTCGTCGCTTCATTTCCGCCGACTCCGTACGAT 172
                      ********************************************* **************

consensus_3897#0      GAAGAAGGGCCGGGCATTTTTCGTTGCAACACTCCAAGCGCAACGCAATCGTCAATCAGC 720
consensus_3897#1      GAAGAGGGCC--GGCATTTT-CGTTGCACCATCC--AACGCAACGCAATCGTCAATCAGC 227
                      ***** ** *  ******** ******* **  *  * **********************

consensus_3897#0      TAACTAGCTTTTAACCTTTTTCTCCTTTTGTGCGCTAAATGTNCTGGCCTTCTGTGTACT 780
consensus_3897#1      TA-CTAG-TTTTAACTTTTCT---CCTTTGTGCGT--AATGTT-TGGCTTTGTGT---TT 276
                      ** **** ******* *** *   * ********   *****  **** ** ***    *

consensus_3897#0      GCGACTAATGCCCTTAACTGCGAATACCGGGTCGCNGTAAATTATCGGTGGTGGTCTATC 840
consensus_3897#1      GCGATTA-TGCCTT--AATGCGA-TACCGG-TCGCG-TAATTTTGTTGTGGTTTTCGTTT 330
                      **** ** **** *  * ***** ****** ****  *** **    *****  **  * 

consensus_3897#0      GNAAATATGTATGNACGATATATAA----------------------------------- 865
consensus_3897#1      ATTTGTTTGTAGATTTATTATTTACGTTTTCGTGTTCGCTTCGGTCTAAGTGAATGAAAC 390
                           * ****       *** **                                    

consensus_3897#0      ------------------------------------------------------------
consensus_3897#1      AAGAAAGTCATTAGAGTAGAGAACATTTCACAGAAACTGTCAATAAAAACCATTTTACTC 450
                                                                                  

consensus_3897#0      ---------------------------------
consensus_3897#1      TAAAAAAAAAATAAAAAAAAAGGCAGCATGTGC 483