cluster # 3907

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3907 cluster # 3907 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3907#0 length = 893 sequences # 1

consensus_3907#1 length = 686 sequences # 2

consensusID : consensus_3907#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 893
fasta sequence

                              [CCCAGGCTTATGAAGACGCGGATGCATCTATAAAGGGTGACGATGCTNTTACGAAGGAGGATGATACAGCTACCAAAAACGAATCGGTGGCCACGAAACAACAGGAAAAATCGGAAGCTGCTGCTGAGCCTAGCGCTATCATCGATCTGGATGCAAGCAGTACCGAGAGTTCCGACAACAAGAGTGCCGCCGAGGAAGACTGTGGATGCATCTGAACAACGGATAGCGAGCCCACTGTTCAAGAACGCAGATTTCACGAGATTTGNGACAAATGAGTCAATCGACCGAACTCGTTGGTGACCGACCCTGCCGAACGCGAAACAGCACGACAGTACGAACGCTAACGCTGACTAACACACGGCAAGCAAAGCACACGACAACGCTAAAGAATCCAGGNGAACGCTCTGCCACACGCAGCACTTGCACGCGACACGGCTCTGCTCCTCGCGACGCCGCACACACACCCGCTTAGCAACNACCAACGCCTCCTGCAACGGCGCGCGTCCTAAGCTGGACGGCCTCCCCAAAAGGTTCCACACCGGCACGCACACGCTGACCGAACAACCCCGGCGACAACCGGCAACTTCTACCAACGCCCCTNGGCACACAAGCCAGCCCGCACTTAACANACAAACGCATTGGCTTGGCAAACATACGCGCCGCATTGGACCCCCCGGGTCATGATGTCAACAACAATAACTATACGCGGNTTTCCTTTCCCTCCGAGCGGGCGTGAGCGAAAGNCAGACGGGACAGTTAGGAAAGCTGGGTNTCTTCCCGGGCCGTNAAACNTTCCCCATCGACCGGCCAAAACACACAACACACCCCCCATTTCACATTACATCCCCCCCGCCAACAACAGCCACCCGTTGGNCACTTCAAACANAACCANT]

[+] EMBL AL695737             [CCCAGGCTTATGAAGACGCGGATGCATCTATAAAGGGTGACGATGCTNTTACGAAGGAGGATGATACAGCTACCAAAAACGAATCGGTGGCCACGAAACAACAGGAAAAATCGGAAGCTGCTGCTGAGCCTAGCGCTATCATCGATCTGGATGCAAGCAGTACCGAGAGTTCCGACAACAAGAGTGCCGCCGAGGAAGACTGTGGATGCATCTGAACAACGGATAGCGAGCCCACTGTTCAAGAACGCAGATTTCACGAGATTTGNGACAAATGAGTCAATCGACCGAACTCGTTGGTGACCGACCCTGCCGAACGCGAAACAGCACGACAGTACGAACGCTAACGCTGACTAACACACGGCAAGCAAAGCACACGACAACGCTAAAGAATCCAGGNGAACGCTCTGCCACACGCAGCACTTGCACGCGACACGGCTCTGCTCCTCGCGACGCCGCACACACACCCGCTTAGCAACNACCAACGCCTCCTGCAACGGCGCGCGTCCTAAGCTGGACGGCCTCCCCAAAAGGTTCCACACCGGCACGCACACGCTGACCGAACAACCCCGGCGACAACCGGCAACTTCTACCAACGCCCCTNGGCACACAAGCCAGCCCGCACTTAACANACAAACGCATTGGCTTGGCAAACATACGCGCCGCATTGGACCCCCCGGGTCATGATGTCAACAACAATAACTATACGCGGNTTTCCTTTCCCTCCGAGCGGGCGTGAGCGAAAGNCAGACGGGACAGTTAGGAAAGCTGGGTNTCTTCCCGGGCCGTNAAACNTTCCCCATCGACCGGCCAAAACACACAACACACCCCCCATTTCACATTACATCCCCCCCGCCAACAACAGCCACCCGTTGGNCACTTCAAACANAACCANT]




>consensus_3907#0
CCCAGGCTTATGAAGACGCGGATGCATCTATAAAGGGTGACGATGCTNTTACGAAGGAGG
ATGATACAGCTACCAAAAACGAATCGGTGGCCACGAAACAACAGGAAAAATCGGAAGCTG
CTGCTGAGCCTAGCGCTATCATCGATCTGGATGCAAGCAGTACCGAGAGTTCCGACAACA
AGAGTGCCGCCGAGGAAGACTGTGGATGCATCTGAACAACGGATAGCGAGCCCACTGTTC
AAGAACGCAGATTTCACGAGATTTGNGACAAATGAGTCAATCGACCGAACTCGTTGGTGA
CCGACCCTGCCGAACGCGAAACAGCACGACAGTACGAACGCTAACGCTGACTAACACACG
GCAAGCAAAGCACACGACAACGCTAAAGAATCCAGGNGAACGCTCTGCCACACGCAGCAC
TTGCACGCGACACGGCTCTGCTCCTCGCGACGCCGCACACACACCCGCTTAGCAACNACC
AACGCCTCCTGCAACGGCGCGCGTCCTAAGCTGGACGGCCTCCCCAAAAGGTTCCACACC
GGCACGCACACGCTGACCGAACAACCCCGGCGACAACCGGCAACTTCTACCAACGCCCCT
NGGCACACAAGCCAGCCCGCACTTAACANACAAACGCATTGGCTTGGCAAACATACGCGC
CGCATTGGACCCCCCGGGTCATGATGTCAACAACAATAACTATACGCGGNTTTCCTTTCC
CTCCGAGCGGGCGTGAGCGAAAGNCAGACGGGACAGTTAGGAAAGCTGGGTNTCTTCCCG
GGCCGTNAAACNTTCCCCATCGACCGGCCAAAACACACAACACACCCCCCATTTCACATT
ACATCCCCCCCGCCAACAACAGCCACCCGTTGGNCACTTCAAACANAACCANT

consensusID : consensus_3907#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 686
fasta sequence

                              [AGCCAAGCGCTGTAATCGATCTGGACGCTAGCAGTACCGAAAGTGATGGTAACAAAAGCGCCACGGAGGAAGACGCAGATGCATCTAAGAAGAGTGACGATGCGTCTACGAAGGAAGATGATACAGCTACCAAAAACGAATCGGTGACCACGAAACAACAGGAAAAATCGGAAGCTACTGCTGAGCCTAGCGCTATCATCGATCTGGATGCGAGCAGTACCGAGAGTTCCGACAACAAGAGTGCCACCGAGGAAGACGTGGATGCATCGAACAAGGATAGCGAGCCCACTGTTCAAGAAGAGATTTCAGAGATTTGCACAAATGAGTCAATCGACGAATCGTTGATGACAGACCCTGCCGAACCCGAAACAGCAGGAGTAGAAGTAAGTGATAACAAGGAAGAAAGCACAGACAACCCTAAGGTTCAGGAAGTTGCCGAAGAGATTGNGGAAGTTGTTGGGGAAAACGTAGACACAACGTCTGACGGGTCTAGTGAGCTCCAAAGTCAAGAGAAGGAGACACCGGACGATTCAGCTGAAGTCGTAGGGTGTGAACCTGCCGAGAAAATAGTCTCCGGTGAGGATGATGTCGTATCAGCGAAAACCTCTTCCGAACCTGTAAATAGTAATTCTGAACCAATGGACACGGAAGACGGGCAGCTTTCATGCAACGATGCCGAAGTGATG]

[+] EMBL BX602746             [AGCCAAGCGCTGTAATCGATCTGGACGCTAGCAGTACCGAAAGTGATGGTAACAAAAGCGCCACGGAGGAAGACGCAGATGCATCTAAGAAGAGTGACGATGCGTCTACGAAGGAAGATGATACAGCTACCAAAAACGAATCGGTGACCACGAAACAACAGGAAAAATCGGAAGCTACTGCTGAGCCTAGCGCTATCATCGATCTGGATGCGAGCAGTACCGAGAGTTCCGACAACAAGAGTGCCACCGAGGAAGACGTGGATGCATCGAACAAGGATAGCGAGCCCACTGTTCAAGAAGAGATTTCAGAGATTTGCACAAATGAGTCAATCGACGAATCGTTGATGACAGACCCTGC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX627623             [                                                                                                                                          AATCGGTGACCACGAAACAACAGGAAAAATCGGAAGCTACTGCTGAGCCTAGCGCTATCATCGATCTGGATGCGAGCAGTACCGAGAGTTCCGACAACAAGAGTGCCACCGAGGAAGACGTGGATGCATCGAACAAGGATAGCGAGCCCACTGTTCAAGAAGAGATTTCAGAGATTTGCACAAATGAGTCAATCGACGAATCGTTGATGACAGACCCTGCCGAACCCGAAACAGCAGGAGTAGAAGTAAGTGATAACAAGGAAGAAAGCACAGACAACCCTAAGGTTCAGGAAGTTGCCGAAGAGATTGNGGAAGTTGTTGGGGAAAACGTAGACACAACGTCTGACGGGTCTAGTGAGCTCCAAAGTCAAGAGAAGGAGACACCGGACGATTCAGCTGAAGTCGTAGGGTGTGAACCTGCCGAGAAAATAGTCTCCGGTGAGGATGATGTCGTATCAGCGAAAACCTCTTCCGAACCTGTAAATAGTAATTCTGAACCAATGGACACGGAAGACGGGCAGCTTTCATGCAACGATGCCGAAGTGATG]




>consensus_3907#1
AGCCAAGCGCTGTAATCGATCTGGACGCTAGCAGTACCGAAAGTGATGGTAACAAAAGCG
CCACGGAGGAAGACGCAGATGCATCTAAGAAGAGTGACGATGCGTCTACGAAGGAAGATG
ATACAGCTACCAAAAACGAATCGGTGACCACGAAACAACAGGAAAAATCGGAAGCTACTG
CTGAGCCTAGCGCTATCATCGATCTGGATGCGAGCAGTACCGAGAGTTCCGACAACAAGA
GTGCCACCGAGGAAGACGTGGATGCATCGAACAAGGATAGCGAGCCCACTGTTCAAGAAG
AGATTTCAGAGATTTGCACAAATGAGTCAATCGACGAATCGTTGATGACAGACCCTGCCG
AACCCGAAACAGCAGGAGTAGAAGTAAGTGATAACAAGGAAGAAAGCACAGACAACCCTA
AGGTTCAGGAAGTTGCCGAAGAGATTGNGGAAGTTGTTGGGGAAAACGTAGACACAACGT
CTGACGGGTCTAGTGAGCTCCAAAGTCAAGAGAAGGAGACACCGGACGATTCAGCTGAAG
TCGTAGGGTGTGAACCTGCCGAGAAAATAGTCTCCGGTGAGGATGATGTCGTATCAGCGA
AAACCTCTTCCGAACCTGTAAATAGTAATTCTGAACCAATGGACACGGAAGACGGGCAGC
TTTCATGCAACGATGCCGAAGTGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3907#0      ---------------------------------------------------------CCC 3
consensus_3907#1      AGCCAAGCGCTGTAATCGATCTGGACGCTAGCAGTACCGAAAGTGATGGTAACAAAAGCG 60
                                                                                * 

consensus_3907#0      AGGCTTATGAAGACGCGGATGCATCTATAAAGGGTGACGATGCTNTTACGAAGGAGGATG 63
consensus_3907#1      CCACGGAGGAAGACGCAGATGCATCTAAGAAGAGTGACGATGCGTCTACGAAGGAAGATG 120
                         *  * ******** **********  *** **********   ********* ****

consensus_3907#0      ATACAGCTACCAAAAACGAATCGGTGGCCACGAAACAACAGGAAAAATCGGAAGCTGCTG 123
consensus_3907#1      ATACAGCTACCAAAAACGAATCGGTGACCACGAAACAACAGGAAAAATCGGAAGCTACTG 180
                      ************************** ***************************** ***

consensus_3907#0      CTGAGCCTAGCGCTATCATCGATCTGGATGCAAGCAGTACCGAGAGTTCCGACAACAAGA 183
consensus_3907#1      CTGAGCCTAGCGCTATCATCGATCTGGATGCGAGCAGTACCGAGAGTTCCGACAACAAGA 240
                      ******************************* ****************************

consensus_3907#0      GTGCCGCCGAGGAAGACTGTGGATGCATCTGAACAACGGATAGCGAGCCCACTGTTCAAG 243
consensus_3907#1      GTGCCACCGAGGAAGAC-GTGGATGCATC-GAACAA-GGATAGCGAGCCCACTGTTCAAG 297
                      ***** *********** *********** ****** ***********************

consensus_3907#0      AACGCAGATTTCACGAGATTTGNGACAAATGAGTCAATCGACCGAACTCGTTGGTGACCG 303
consensus_3907#1      AAG--AGATTTCA-GAGATTTGC-ACAAATGAGTCAATCGACGAA--TCGTTGATGACAG 351
                      **   ******** ********  ******************  *  ****** **** *

consensus_3907#0      ACCCTGCCGAACGCGAAACAGCACGA-CAGTA-CGAACGCTAACGCTGACTAACACACGG 361
consensus_3907#1      ACCCTGCCGAACCCGAAACAGCAGGAGTAGAAGTAAGTGATAACAAGGAAGAAAGCACAG 411
                      ************ ********** **  ** *   *  * ****   **  **  *** *

consensus_3907#0      CAAGC---AAAGCACACGACAACGCTAAAGA-ATCCAGGNGAACGCTCTGCCACACGCAG 417
consensus_3907#1      ACAACCCTAAGGTTCAGGAAGTTGCCGAAGAGATTGNGGAAGTTGTTGGGGAAAACGTAG 471
                        * *   ** *  ** **    **  **** **   **     * *  *  * *** **

consensus_3907#0      CACTTGCACGCGACACGGCTCTGCTCCTCGCGACGCCGCACACACACCCGCTTAGCAACN 477
consensus_3907#1      -ACACA-ACGTCTGACGGGTCTA------GTGA-GCTCCAAAGTCAAGAGAA-GGAGACA 521
                       **    ***    **** ***       * ** **  ** *  **   *    *  ** 

consensus_3907#0      ACCAACGCCTCCTGCAACGGCGCGCGTCCTAAGCTGGACGGCCTCCCCAAAAGGTTCCAC 537
consensus_3907#1      CCGGACGATTCAGCTGAAGTCGTAGGGTGTGAACCTGCCGAGA-----AAATAGTCTCCG 576
                       *  ***  **     * * **   *   * * *  * **        ***  **  *  

consensus_3907#0      ACCGGCACGCACACGC-TGACCGAACAACCCCGGCGACAACCGGCAACTTCTA--CCAAC 594
consensus_3907#1      GTGAGGATGATGTCGTATCAGCGAAAACCTCTTCCG--AACCTGTAAATAGTAATTCTGA 634
                          * * *    **  * * **** * * *   **  **** * ** *  **   *   

consensus_3907#0      GCCCCTNGGCACACAAGCCAGCCCGCACTTAACANACAAACGCATTGGCTTGGCAAACAT 654
consensus_3907#1      ACCAATGGACACGGAAGACGG---GCAGCTTTCATGCAACGATGCCGAAGTGATG----- 686
                       **  * * ***  *** * *   ***  *  **  ***       *   **        

consensus_3907#0      ACGCGCCGCATTGGACCCCCCGGGTCATGATGTCAACAACAATAACTATACGCGGNTTTC 714
consensus_3907#1      ------------------------------------------------------------
                                                                                  

consensus_3907#0      CTTTCCCTCCGAGCGGGCGTGAGCGAAAGNCAGACGGGACAGTTAGGAAAGCTGGGTNTC 774
consensus_3907#1      ------------------------------------------------------------
                                                                                  

consensus_3907#0      TTCCCGGGCCGTNAAACNTTCCCCATCGACCGGCCAAAACACACAACACACCCCCCATTT 834
consensus_3907#1      ------------------------------------------------------------
                                                                                  

consensus_3907#0      CACATTACATCCCCCCCGCCAACAACAGCCACCCGTTGGNCACTTCAAACANAACCANT 893
consensus_3907#1      -----------------------------------------------------------