cluster # 3914

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Anopheles gambiae
cluster # 3914 cluster # 3914 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3914#0 length = 494 sequences # 2

consensus_3914#1 length = 120 sequences # 1

consensusID : consensus_3914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 494
fasta sequence

                              [CCGCGAAACTTTAGTATGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTGAATTGTAATGAAGATAAAACTGAGAGGGGATCGGATAGCGCATGTCCTTCCTCGGTTAGAGGGAAACCTAAATCGGGTAGGACATGGAAATCTCAAAAGTTACGATTTGCTTCTATTAAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAGCATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAACGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATCGTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATGATTGAAAAACGGGACATCAGTAAATTAAATGTCGTCTAATGCATTACCCAAGACAATAAACAATTGGACCGTCATGT]

[+] EMBL BM600821             [CCGCGAAACTTTAGTATGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTGAATTGTAATGAAGATAAAACTGAGAGGGGATCGGATAGCGCATGTCCTTCCTCGGTTAGAGGGAAACCTAAATCGGGTAGGACATGGAAATCTCAAAAGTTACGATTTGCTTCTATTAAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAGCATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAACGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATCGTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATGATTGAAAAACGGGACATCAGTAAATTAAATGTCGTCTAATGCATTACCCAAGACAATAAACAATTGGACCGTCATGT]
[+] EMBL BM606163             [              ccgGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTGAATTGTAATGAAGATAAAACTGAGAATGGATCGGATAGCGCATGTCCTTCCTCGGTTAGAGGGAAACCTAAATCGGGTAGGACATGGAAATCTCAAAAGTTACGATTTGCTTCTATTAAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAGCATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAACGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATCGTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATGATTGAAAAACGGGACATCAGTAAATTAAATGTCGTC                                         ]




>consensus_3914#0
CCGCGAAACTTTAGTATGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTG
AATTGTAATGAAGATAAAACTGAGAGGGGATCGGATAGCGCATGTCCTTCCTCGGTTAGA
GGGAAACCTAAATCGGGTAGGACATGGAAATCTCAAAAGTTACGATTTGCTTCTATTAAG
AAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAGCAT
ATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAACGT
TTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATCGTA
CAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATGATT
GAAAAACGGGACATCAGTAAATTAAATGTCGTCTAATGCATTACCCAAGACAATAAACAA
TTGGACCGTCATGT

consensusID : consensus_3914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 120
fasta sequence

                              [GTCCTACCCGATTTAGGTTTCCCTCTAACCGAGGAAGGACATGCGCTATCCGATCCATTCTCAGTTTTATCTTCATTACAATTCAATGATGACCCAGTAGGCCAACAGTGCTCGAGGAAT]

[+] EMBL CNS08OKK             [GTCCTACCCGATTTAGGTTTCCCTCTAACCGAGGAAGGACATGCGCTATCCGATCCATTCTCAGTTTTATCTTCATTACAATTCAATGATGACCCAGTAGGCCAACAGTGCTCGAGGAAT]




>consensus_3914#1
GTCCTACCCGATTTAGGTTTCCCTCTAACCGAGGAAGGACATGCGCTATCCGATCCATTC
TCAGTTTTATCTTCATTACAATTCAATGATGACCCAGTAGGCCAACAGTGCTCGAGGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3914#0      CCGCGAAACTTTAGTATGGATAAAATTGCATTTGATCATACGGATGAAGGGTCATCATTG 60
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      AATTGTAATGAAGATAAAACTGAGAGGGGATCGGATAGCGCATGTCCTTCCTCGGTTAGA 120
consensus_3914#1      -------------------------------------------GTCCTACCCGATTTAGG 17
                                                                 ***** **    **** 

consensus_3914#0      GGGAAACCTAAATCGGGTAGGACATG-GAAATCTCAAAAGTTACGA--TTTGCTTCTATT 177
consensus_3914#1      TTTCCCTCTAACCGAGGAAGGACATGCGCTATCCGATCCATTCTCAGTTTTATCTTCATT 77
                             ****    ** ******** *  ***  *    **   *  ***   *  ***

consensus_3914#0      AAGAAAAGTGTACAATGTAAGAAGTCATCACAGCAACACGCATTTCGAGAAGAAATCAAG 237
consensus_3914#1      ACAATTCAATGATGACCCAGTAGGCCAACAGTGCTCGAGGAAT----------------- 120
                      *  *       *  *   *  * * ** **  **   * * **                 

consensus_3914#0      CATATCAAGGAACTATCACGATCTATAAAGGAAACAAGGCGACGTGAAAATGATATCAAA 297
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      CGTTTGAGACGCGAAGAAAACAAACGCAGAAGGATTGAAAATGAACGTAAGTCGGAAATC 357
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      GTACAAGTTATCAAAAATCCTGCAAAACTCAAAAGAATGAGAAAGAAACAGCTGCGAATG 417
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      ATTGAAAAACGGGACATCAGTAAATTAAATGTCGTCTAATGCATTACCCAAGACAATAAA 477
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      CAATTGGACCGTCATGT 494
consensus_3914#1      -----------------